View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16060_low_10 (Length: 349)
Name: NF16060_low_10
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 31 - 349
Target Start/End: Original strand, 48696182 - 48696499
Alignment:
| Q |
31 |
aatttgcatttaagaagtttgttgagccaacttgacctctgtaagggtaaatcatcaggatcaaatgacaattatttactgtacttgaagtcaataggga |
130 |
Q |
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| T |
48696182 |
aatttgcatttcagaattttgttgagccaacttgacctctgtaagggtaaatcatcaggatcaaatgacaattatttactgtacttgaagtcaataggga |
48696281 |
T |
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| Q |
131 |
tgtgaaagtgtaaaaatagtcatgttatttgaacataaaaaatttgacatgatatccaacaccatataaaaatggactagggttgtgtgcagtcattaga |
230 |
Q |
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| T |
48696282 |
tgtgaaagtgtaaaaatagtcatgttatttgaacataaaaaatttgacatgatatccaaca-catataaaaatggactagggttgtgtgcagtcattaga |
48696380 |
T |
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| Q |
231 |
ctgtgattgcactgctgtcagccacatctggggtcgtcttatcttaaaatccaaaccatccgatcttaatggaacgactcaaatgtgctgactacatgga |
330 |
Q |
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| T |
48696381 |
ctgtgattgcactgctgtcagccacatctggggtcgtcttatcttaaaatccaaaccatccgatcttaatggaacgactcaaatgtgctgactacatgga |
48696480 |
T |
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| Q |
331 |
gtctgactgcgctaaatcc |
349 |
Q |
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| T |
48696481 |
gtctgactgcactaaatcc |
48696499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 52962267 - 52962318
Alignment:
| Q |
152 |
atgttatttgaacataaaaaatttgacatgatatccaacaccatataaaaat |
203 |
Q |
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| T |
52962267 |
atgttatttgaacatctaaaaattgacatcatatccaacatcatataaaaat |
52962318 |
T |
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