View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16060_low_11 (Length: 324)

Name: NF16060_low_11
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16060_low_11
NF16060_low_11
[»] chr4 (8 HSPs)
chr4 (16-310)||(10979258-10979551)
chr4 (21-241)||(56079649-56079866)
chr4 (129-229)||(12247725-12247823)
chr4 (31-137)||(39667769-39667875)
chr4 (29-81)||(6095266-6095318)
chr4 (49-137)||(39667672-39667760)
chr4 (31-82)||(12493299-12493350)
chr4 (31-84)||(16616440-16616493)
[»] chr2 (2 HSPs)
chr2 (48-249)||(13691277-13691476)
chr2 (49-82)||(20474742-20474775)
[»] chr8 (10 HSPs)
chr8 (29-249)||(32372291-32372509)
chr8 (29-248)||(32359760-32359977)
chr8 (57-249)||(32343182-32343372)
chr8 (57-249)||(32355669-32355859)
chr8 (157-254)||(27931451-27931549)
chr8 (29-226)||(10691445-10691641)
chr8 (35-249)||(12110006-12110219)
chr8 (131-227)||(14424286-14424381)
chr8 (31-80)||(24849778-24849827)
chr8 (31-82)||(23863924-23863975)
[»] chr1 (4 HSPs)
chr1 (31-137)||(14911161-14911267)
chr1 (159-249)||(12301230-12301319)
chr1 (173-247)||(18541492-18541566)
chr1 (190-227)||(24218472-24218509)
[»] chr7 (10 HSPs)
chr7 (29-229)||(9418540-9418739)
chr7 (157-249)||(20332110-20332202)
chr7 (65-247)||(3935632-3935812)
chr7 (129-226)||(15706094-15706190)
chr7 (176-254)||(36054301-36054379)
chr7 (31-82)||(26193970-26194021)
chr7 (31-84)||(24814592-24814645)
chr7 (31-82)||(15708837-15708888)
chr7 (129-182)||(19387568-19387620)
chr7 (159-227)||(10882398-10882465)
[»] chr3 (5 HSPs)
chr3 (31-227)||(3286468-3286663)
chr3 (29-246)||(19583122-19583337)
chr3 (98-227)||(3258981-3259109)
chr3 (131-200)||(54287795-54287863)
chr3 (31-82)||(214722-214773)
[»] chr6 (12 HSPs)
chr6 (141-247)||(6442455-6442560)
chr6 (129-226)||(30631581-30631676)
chr6 (28-228)||(31136032-31136237)
chr6 (156-227)||(20071848-20071918)
chr6 (154-255)||(20075660-20075761)
chr6 (141-254)||(30740050-30740162)
chr6 (160-227)||(13484580-13484646)
chr6 (132-200)||(10291182-10291249)
chr6 (29-111)||(3355999-3356081)
chr6 (56-114)||(26947529-26947587)
chr6 (22-80)||(34209629-34209687)
chr6 (193-230)||(18388017-18388054)
[»] scaffold0328 (1 HSPs)
scaffold0328 (157-249)||(3171-3263)
[»] scaffold0157 (1 HSPs)
scaffold0157 (31-82)||(27127-27178)
[»] chr5 (1 HSPs)
chr5 (113-227)||(41136756-41136869)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 10979551 - 10979258
Alignment:
Q  16 accagcaatagtaaacttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatata 115  Q
    |||||||||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  10979551 accagcaatagtaagctcctagaaacacacgcttcttggaccacaagtcacgtgaataaaatcttcagtcaagtcttcaaggatttcacgcaaaaatata 10979452  T
Q  116 atctttcaaaaaagcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgt 215  Q
    || ||  || ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |    
T  10979451 attttctaagaaagcgaaacaaagtacttcaccttaaa-ctaagatgtcgtacttacatgtctaggacatctgatacaacatgttgctagaacttcttat 10979353  T
Q  216 tttaacaaaatgcagataacacaatacaaaaaccaacaatttttgttatagtcgtagttttaggtaataattagtattcatgcattttaaaaagt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979352 tttaacaaaatgcagataacacaatacaaaaaccaacaatttttgttatagtcgtagttttaggtaataattagtattcatgcattttaaaaagt 10979258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 56079649 - 56079866
Alignment:
Q  21 caatagtaaacttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctt 120  Q
    |||| ||||||||||||||||||| || |||||| |||||||||||||||||| |||||| | |||| |||||||| ||||||| |||||||||||||||    
T  56079649 caatcgtaaacttctagaaacacacgcctcttggaccacaagtcacgtgaatacaatctttaatcaaatcttcaagtatttcacgcaaaaatataatctt 56079748  T
Q  121 tcaaaaaagcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaa 220  Q
    |||| ||| | ||||||||||||| | || | |   | ||||||||||||||||||  || |||||   |||| |||||| |||||||||||||||| ||    
T  56079749 tcaagaaatcaaaacaaagtacttca-ctgata--catgatgtcgtacttacatgttcagaacatcgagtacatcatcttgctagaacttcttgtttcaa 56079845  T
Q  221 caaaatgcagataacacaata 241  Q
    |||||||||| ||||||||||    
T  56079846 caaaatgcagctaacacaata 56079866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 12247823 - 12247725
Alignment:
Q  129 gcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgc 228  Q
    |||||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||| || ||||||||| | |||||| ||||||||||||||||||||    
T  12247823 gcgaaataaaatacttcaccttaa-gctaagatgtcgtacttacatgtctaggacatttg-tacaacatcatgctagaaattcttgttttaacaaaatgc 12247726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 39667875 - 39667769
Alignment:
Q  31 cttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaagc 130  Q
    |||||||||||||| |  |||||| ||||||||| | ||||||||||||||| |||| ||||| |  ||||||| ||||||||||||||| ||| |  ||    
T  39667875 cttctagaaacacacgtctcttggaccacaagtcccatgaataaaatcttcaatcaaatcttccaagatttcacgcaaaaatataatcttccaagattgc 39667776  T
Q  131 gaaacaa 137  Q
    |||||||    
T  39667775 gaaacaa 39667769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 6095318 - 6095266
Alignment:
Q  29 aacttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttc 81  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  6095318 aacttctagaaacacatgcctcttggacaacaagtcacgtgaataaaatcttc 6095266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 39667760 - 39667672
Alignment:
Q  49 tcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaagcgaaacaa 137  Q
    |||||| ||||||||||| |||||||||| |||| |||| |||||||  ||||| | ||||||||||||||| ||| |  |||||||||    
T  39667760 tcttggaccacaagtcacatgaataaaattttcaatcaaatcttcaaagatttcgcgcaaaaatataatcttccaagattgcgaaacaa 39667672  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 12493299 - 12493350
Alignment:
Q  31 cttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttca 82  Q
    |||||||||||||| |  |||||| |||||||||||||||||||||||||||    
T  12493299 cttctagaaacacacgtctcttggaccacaagtcacgtgaataaaatcttca 12493350  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 16616440 - 16616493
Alignment:
Q  31 cttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagt 84  Q
    ||||||||||||||||  | |||| ||||| |||||||||||||||| ||||||    
T  16616440 cttctagaaacacatgtcttttggaccacacgtcacgtgaataaaatattcagt 16616493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 48 - 249
Target Start/End: Complemental strand, 13691476 - 13691277
Alignment:
Q  48 ttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaagcgaaacaaagtacttaac 147  Q
    |||||||  ||||||  ||||||||||| |||||| |||| |||||| | |||||||||| |||||||||||| ||| || |||||| ||||||||| ||    
T  13691476 ttcttggagcacaagctacgtgaataaa-tcttcactcaaatcttcatggatttcacacagaaatataatcttccaagaatgcgaaataaagtacttcac 13691378  T
Q  148 cttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaatacaaaaa 247  Q
     ||||| |||||||||||||||| |||| |||||||||||| |||||||||||  ||||||||||||||||||||||||| ||  ||||||||| |||||    
T  13691377 tttaaa-ctaagatgtcgtactttcatgactaggacatctggtacaacatcttgttagaacttcttgttttaacaaaatgaagccaacacaatataaaaa 13691279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 20474775 - 20474742
Alignment:
Q  49 tcttgggccacaagtcacgtgaataaaatcttca 82  Q
    |||||| |||||||||||||||||||||||||||    
T  20474775 tcttggaccacaagtcacgtgaataaaatcttca 20474742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 32372291 - 32372509
Alignment:
Q  29 aacttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaa 128  Q
    ||||||||||||||||    ||||||  |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |||    
T  32372291 aacttctagaaacacacatctcttggagcacaagtcacgtgaataaaatcttcaatcaaatcttcaagaatttcacacaaaaatataatcttccaagaaa 32372390  T
Q  129 gcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgc 228  Q
    || ||||||||||||| ||||  |    | ||||||||||| ||||||  | |||||||  | |||||||||  |||||||||||||||||||||||| |    
T  32372391 gcaaaacaaagtacttcacct--agtacatgatgtcgtactcacatgttcatgacatcttctccaacatcttgttagaacttcttgttttaacaaaatac 32372488  T
Q  229 agataacacaatacaaaaacc 249  Q
    |   ||||||||| |||||||    
T  32372489 aaccaacacaatataaaaacc 32372509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 32359760 - 32359977
Alignment:
Q  29 aacttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaa 128  Q
    ||||||||||||||||    ||||||  |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |||    
T  32359760 aacttctagaaacacacatctcttggagcacaagtcacgtgaataaaatcttcaatcaaatcttcaagaatttcacacaaaaatataatcttccaagaaa 32359859  T
Q  129 gcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgc 228  Q
    || ||||||||||||| ||||   |   | ||||||||||| ||||||  | |||||||  | |||||||||  |||||||||||||||| ||||||| |    
T  32359860 gcaaaacaaagtacttcacctggta--catgatgtcgtactcacatgttcatgacatcttgtccaacatcttgttagaacttcttgttttcacaaaatac 32359957  T
Q  229 agataacacaatacaaaaac 248  Q
    |   ||||||||| ||||||    
T  32359958 aaccaacacaatataaaaac 32359977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 57 - 249
Target Start/End: Original strand, 32343182 - 32343372
Alignment:
Q  57 cacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaagcgaaacaaagtacttaaccttaaagct 156  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||   |       
T  32343182 cacaagtcacgtgaataaaatcttcaatcaaatcttcaagaatttcacacaaaaatataatcttccaagaaagcaaaacaaagtacttcacctggta--c 32343279  T
Q  157 aagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaatacaaaaacc 249  Q
    | ||||||||||| ||||||  | |||||||  | |||||||||  |||||||||||||||| ||||||| ||   ||||||||| |||||||    
T  32343280 atgatgtcgtactcacatgttcatgacatcttgtccaacatcttgttagaacttcttgttttcacaaaatacaaccaacacaatataaaaacc 32343372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 57 - 249
Target Start/End: Original strand, 32355669 - 32355859
Alignment:
Q  57 cacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaagcgaaacaaagtacttaaccttaaagct 156  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||   |       
T  32355669 cacaagtcacgtgaataaaatcttcaatcaaatcttcaagaatttcacacaaaaatataatcttccaagaaagcaaaacaaagtacttcacctggta--c 32355766  T
Q  157 aagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaatacaaaaacc 249  Q
    | ||||||||||| ||||||  | |||||||  | |||||||||  |||||||||||||||| ||||||| ||   ||||||||| |||||||    
T  32355767 atgatgtcgtactcacatgttcatgacatcttgtccaacatcttgttagaacttcttgttttcacaaaatacaaccaacacaatataaaaacc 32355859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 27931549 - 27931451
Alignment:
Q  157 aagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaata-caaaaaccaacaa 254  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||||| ||||| |||||||    
T  27931549 aagatgtcgtacttacatgtctaggacatctgatccaacatcttgctagaacttcttgttttaacaaaatgcagccaacacaatatcaaaacccaacaa 27931451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 226
Target Start/End: Complemental strand, 10691641 - 10691445
Alignment:
Q  29 aacttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaa 128  Q
    |||||||||||||||| |||||||||  ||||||  |||||||| | ||||||| |||| ||||||   || |||| || |||   |||||| ||| |      
T  10691641 aacttctagaaacacacgcttcttggagcacaagctacgtgaatcatatcttcaatcaaatcttcagtgatctcacgcataaaccaaatcttccaagatt 10691542  T
Q  129 gcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaat 226  Q
    ||||||||||  |||| ||||||| | | |||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  10691541 gcgaaacaaaacacttcaccttaa-gtttagatgtcgtactaacatgtctaggacatctgattcaacaacttactagaacatcttgttttaacaaaat 10691445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 12110006 - 12110219
Alignment:
Q  35 tagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaagcgaaa 134  Q
    |||||||||  ||||||| |  ||||||  |||||||||||| |||||  ||| ||||||| ||| |||| | |||| | |||||| ||| || || |||    
T  12110006 tagaaacacgcgcttcttagagcacaagctacgtgaataaaaacttcaaacaaatcttcaaaaatctcacgcgaaaacacaatcttccaagaatgcaaaa 12110105  T
Q  135 caaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataa 234  Q
     ||||||||  ||||||  ||||| |||||||||||||||||||| || || || |||||| |||| ||||||| | |||||||||||||||||||  ||    
T  12110106 taaagtactacaccttat-gctaacatgtcgtacttacatgtctaagatatttggtacaacgtcttgctagaacatattgttttaacaaaatgcagccaa 12110204  T
Q  235 cacaatacaaaaacc 249  Q
    |||||||| ||||||    
T  12110205 cacaataccaaaacc 12110219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 14424286 - 14424381
Alignment:
Q  131 gaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatg 227  Q
    |||||||| ||||| ||||||| |||||||||||||||| |||||| ||||||||||| | ||||||||| ||| ||| ||||||||||||||||||    
T  14424286 gaaacaaaatacttcaccttaa-gctaagatgtcgtactaacatgtttaggacatctggtccaacatcttgctataacatcttgttttaacaaaatg 14424381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 24849827 - 24849778
Alignment:
Q  31 cttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatctt 80  Q
    ||||| ||||||||||  |||||| |||||||||||||||||||||||||    
T  24849827 cttctggaaacacatgtctcttggaccacaagtcacgtgaataaaatctt 24849778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 23863975 - 23863924
Alignment:
Q  31 cttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttca 82  Q
    ||||| |||||||| |  |||||| |||||||||||||||||||||||||||    
T  23863975 cttctggaaacacaagtctcttggaccacaagtcacgtgaataaaatcttca 23863924  T

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Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 14911267 - 14911161
Alignment:
Q  31 cttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaagc 130  Q
    ||||| |||||||| || |||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||| || ||    
T  14911267 cttctggaaacacacgcctcttggaccacaagtcacgtgaataaaatcttcaatcaaatcttcaagaatttcacacacaaatataatcttccaagaatgc 14911168  T
Q  131 gaaacaa 137  Q
    |||||||    
T  14911167 gaaacaa 14911161  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 12301319 - 12301230
Alignment:
Q  159 gatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaatacaaaaacc 249  Q
    ||||||||||| ||||||| || ||||||| | ||||||||| ||||||| | ||||||||||||||||| |  |||||| || |||||||    
T  12301319 gatgtcgtactcacatgtcaag-acatctggtccaacatcttgctagaacatattgttttaacaaaatgcggtcaacacattataaaaacc 12301230  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 18541566 - 18541492
Alignment:
Q  173 atgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaatacaaaaa 247  Q
    |||||||||| ||||| | |||||||||  || ||||| |||||||||||||||| ||  ||||||||| |||||    
T  18541566 atgtctaggaaatctggtccaacatcttggtataactttttgttttaacaaaatgtagccaacacaatataaaaa 18541492  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 24218509 - 24218472
Alignment:
Q  190 tacaacatcttactagaacttcttgttttaacaaaatg 227  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  24218509 tacaacatcttactagaacatattgttttaacaaaatg 24218472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 9418739 - 9418540
Alignment:
Q  29 aacttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaa 128  Q
    |||||| |||||||||  | | |||| |||||||| || ||||| ||||||||| |||  |||||||| |||| |  ||||||||||||||| ||| ||     
T  9418739 aacttccagaaacacacacattttggaccacaagttacatgaatgaaatcttcaatcagatcttcaaggatttaatgcaaaaatataatcttccaagaat 9418640  T
Q  129 gcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgc 228  Q
     | ||| |||||| || ||||||| | |||||||||||| |||||||| |||||||||| ||||||||| ||  |||||| |||||||||||||||||||    
T  9418639 acaaaataaagtaattcaccttaa-gataagatgtcgtatttacatgtttaggacatctaatacaacatattgttagaacctcttgttttaacaaaatgc 9418541  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 20332202 - 20332110
Alignment:
Q  157 aagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaatacaaaaacc 249  Q
    ||||||| |||||||||||||||  ||||||| | ||||||||| |||||||||||||||||||||||||||||  ||||||||| |||||||    
T  20332202 aagatgttgtacttacatgtctaatacatctggtccaacatcttgctagaacttcttgttttaacaaaatgcagccaacacaatataaaaacc 20332110  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 247
Target Start/End: Original strand, 3935632 - 3935812
Alignment:
Q  65 acgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaagcgaaacaaagtacttaaccttaaagctaagatgtc 164  Q
    ||||||||||| |||||| |||| |||||||| ||||||| |||||||| ||||||  || || |||||| |||||| || ||||||| | |||||| |     
T  3935632 acgtgaataaa-tcttcactcaaatcttcaaggatttcacgcaaaaataaaatcttcgaagaatgcgaaataaagtattttaccttaa-gttaagatatt 3935729  T
Q  165 gtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaatacaaaaa 247  Q
    ||||||| ||||| || | ||| | ||||| ||||| ||| |||||||||||||||||||||||||  ||| ||||| |||||    
T  3935730 gtacttatatgtcgagaaaatccggtacaatatcttcctaaaacttcttgttttaacaaaatgcagtcaacgcaataaaaaaa 3935812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 15706094 - 15706190
Alignment:
Q  129 gcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaat 226  Q
    |||||||| | ||||| ||||||| ||||||||||| |||| ||||||||||||||| || | ||||||||| ||||||| |||| ||||||||||||    
T  15706094 gcgaaacataatacttcaccttaa-gctaagatgtcttactaacatgtctaggacatatggtccaacatcttcctagaacatcttattttaacaaaat 15706190  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 36054301 - 36054379
Alignment:
Q  176 tctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaatacaaaaaccaacaa 254  Q
    ||||||||||||| | ||||||||| |||||||  |||||||||||||||||| |  ||||||||| |||| |||||||    
T  36054301 tctaggacatctggttcaacatcttgctagaacaacttgttttaacaaaatgcggccaacacaatataaaacccaacaa 36054379  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 26194021 - 26193970
Alignment:
Q  31 cttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttca 82  Q
    ||||| |||||||| |||||||||  ||||||||||||||||||||||||||    
T  26194021 cttcttgaaacacaagcttcttggagcacaagtcacgtgaataaaatcttca 26193970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 24814592 - 24814645
Alignment:
Q  31 cttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagt 84  Q
    ||||| |||||||| |  |||||| |||||||||||||||||||||||||||||    
T  24814592 cttctggaaacacaagtctcttggaccacaagtcacgtgaataaaatcttcagt 24814645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 15708837 - 15708888
Alignment:
Q  31 cttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttca 82  Q
    ||||| |||||||| |  |||||| |||||||||||||||||||||||||||    
T  15708837 cttctggaaacacaagtctcttggaccacaagtcacgtgaataaaatcttca 15708888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 19387568 - 19387620
Alignment:
Q  129 gcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctagga 182  Q
    |||||||| | ||||| ||||||| |||||||||||||||| ||||||||||||    
T  19387568 gcgaaacataatacttcaccttaa-gctaagatgtcgtactaacatgtctagga 19387620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 10882398 - 10882465
Alignment:
Q  159 gatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatg 227  Q
    ||||||||||| ||||||||||| |||||| ||||| ||||| | ||||  | ||||||||||||||||    
T  10882398 gatgtcgtact-acatgtctaggtcatctggtacaaaatcttgccagaaaatattgttttaacaaaatg 10882465  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 227
Target Start/End: Complemental strand, 3286663 - 3286468
Alignment:
Q  31 cttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaagc 130  Q
    |||||| ||||| |||||||||||  ||||||  | ||||||||||||||||  ||| ||||  |  |||||| ||||||||| ||||||  || ||||     
T  3286663 cttctacaaacatatgcttcttggagcacaagcaatgtgaataaaatcttcaaacaaatcttatattatttcagacaaaaataaaatcttctaagaaaga 3286564  T
Q  131 gaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatg 227  Q
    ||||||||  |||| ||||||| | || |||||||||| |||||| ||||||||| || |||||||||||  |||||||||||||||||||||||||    
T  3286563 gaaacaaataactttaccttaa-gttatgatgtcgtacatacatggctaggacatatggtacaacatcttgttagaacttcttgttttaacaaaatg 3286468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 246
Target Start/End: Complemental strand, 19583337 - 19583122
Alignment:
Q  29 aacttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatataatctttcaaaaaa 128  Q
    |||||||||||||||| |  | ||||  |||||||||||||||| | ||||||| |||| || |||   || ||||  |||| |  |||||| ||| |||    
T  19583337 aacttctagaaacacacgtcttttggagcacaagtcacgtgaatcatatcttcaatcaaatcctcagagatctcacgtaaaagtcaaatcttccaagaaa 19583238  T
Q  129 gcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgc 228  Q
    |||||||||||||||| ||||   |  |  ||||||||| ||||||||||||||||| |||| ||||||||| |||||| || ||||||||||| |||||    
T  19583237 gcgaaacaaagtacttcacctggtacat--gatgtcgtatttacatgtctaggacatatgatccaacatcttgctagaatttattgttttaacataatgc 19583140  T
Q  229 agataacacaatacaaaa 246  Q
    ||  ||||||||| ||||    
T  19583139 agtcaacacaatataaaa 19583122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 3259109 - 3258981
Alignment:
Q  98 atttcacacaaaaatataatctttcaaaaaagcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacat 197  Q
    ||||||| |||||||| |||||   || |||| ||||||||| |||| ||||||| ||||||||||||||| |||||| | | |  ||||| ||||||||    
T  3259109 atttcacgcaaaaataaaatctgctaagaaagagaaacaaagaacttcaccttaa-gctaagatgtcgtacatacatggccaaggaatctggtacaacat 3259011  T
Q  198 cttactagaacttcttgttttaacaaaatg 227  Q
    ||| ||||||||||||||||||||||||||    
T  3259010 cttgctagaacttcttgttttaacaaaatg 3258981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 54287795 - 54287863
Alignment:
Q  131 gaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatctt 200  Q
    ||||||||  |||| ||||||| |||||||||||||||||||||||||| ||||||| ||| | ||||||    
T  54287795 gaaacaaaacacttcaccttaa-gctaagatgtcgtacttacatgtctaagacatctaatatagcatctt 54287863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 214773 - 214722
Alignment:
Q  31 cttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttca 82  Q
    ||||| |||||||| |  |||||| |||||||||||||||||||||||||||    
T  214773 cttctggaaacacaagtctcttggaccacaagtcacgtgaataaaatcttca 214722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 141 - 247
Target Start/End: Original strand, 6442455 - 6442560
Alignment:
Q  141 acttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaat 240  Q
    |||| |||||||| |||||||||||||||||||||||| |||||||||  |||||||||| ||||||| |||| ||||||||||||||||  ||||||||    
T  6442455 acttcaccttaaa-ctaagatgtcgtacttacatgtcttggacatctggcacaacatcttgctagaacatcttattttaacaaaatgcagccaacacaat 6442553  T
Q  241 acaaaaa 247  Q
    | |||||    
T  6442554 ataaaaa 6442560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 30631581 - 30631676
Alignment:
Q  129 gcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaat 226  Q
    |||||| ||||||||| | | |||| ||||||||||||||||||||||| ||||||||||||||||||| || ||| || ||||||||||||||||||    
T  30631581 gcgaaataaagtacttcatcataaa-ctaagatgtcgtacttacatgtcgaggacatctgatacaacattttgcta-aaattcttgttttaacaaaat 30631676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 31136237 - 31136032
Alignment:
Q  28 aaacttctagaaacacatgcttcttgggccacaagtca---cgtgaataaaatcttcagtcaagtc----ttcaagaatttcacacaaaaatataatctt 120  Q
    ||||||||||||||| | || ||||||  |||||||||   ||| ||||||||||| |||||| |     |||||| ||||||| |||||||||||||||    
T  31136237 aaacttctagaaacatacgcctcttggatcacaagtcatgacgtaaataaaatcttgagtcaaataaatattcaaggatttcacgcaaaaatataatctt 31136138  T
Q  121 tcaaaaaagcgaaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaa 220  Q
     ||  ||||| | ||||||||||| || |   |  |  ||||||||||| |||||||||||| ||||| | ||||||||| ||||||| |||||||||||    
T  31136137 ccacgaaagcaacacaaagtacttcacatggtacat--gatgtcgtactaacatgtctaggaaatctggtccaacatcttgctagaacatcttgttttaa 31136040  T
Q  221 caaaatgc 228  Q
    ||||||||    
T  31136039 caaaatgc 31136032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 20071918 - 20071848
Alignment:
Q  156 taagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatg 227  Q
    |||||||||||||||||||||||||| |||||| | ||||||||| |||||||||||| ||| |||||||||    
T  20071918 taagatgtcgtacttacatgtctaggtcatctggtccaacatcttgctagaacttctt-tttcaacaaaatg 20071848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 20075761 - 20075660
Alignment:
Q  154 gctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaatacaaaaa-ccaac 252  Q
    ||||| |||| ||||||||||||||||||| | || |  |||||||| ||||||||||||| |||||||||||||||  ||||||||| ||||| |||||    
T  20075761 gctaaaatgttgtacttacatgtctaggacttatggtcaaacatctttctagaacttcttg-tttaacaaaatgcagccaacacaatataaaaatccaac 20075663  T
Q  253 aat 255  Q
    |||    
T  20075662 aat 20075660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 30740162 - 30740050
Alignment:
Q  141 acttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaat 240  Q
    |||| |||||||| |||||||||| |||||||||| ||| |||| ||| |||||||| || |||||||  ||| |||||||||||| ||  |||||||||    
T  30740162 acttcaccttaaa-ctaagatgtcatacttacatgactaagacacctggtacaacattttgctagaacaacttattttaacaaaatacatttaacacaat 30740064  T
Q  241 acaaaaaccaacaa 254  Q
    | |||| |||||||    
T  30740063 ataaaacccaacaa 30740050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 13484580 - 13484646
Alignment:
Q  160 atgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatg 227  Q
    |||||||||| |||||||||||||||||| |||||||||||| ||||||    |||||||||||||||    
T  13484580 atgtcgtact-acatgtctaggacatctggtacaacatcttattagaacaaaatgttttaacaaaatg 13484646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 10291182 - 10291249
Alignment:
Q  132 aaacaaagtacttaaccttaaagctaagatgtcgtacttacatgtctaggacatctgatacaacatctt 200  Q
    ||||||| ||||| ||||||| |||||||||||||||| |||||||||||| || || | |||||||||    
T  10291182 aaacaaaatacttcaccttaa-gctaagatgtcgtactaacatgtctaggatatttggtccaacatctt 10291249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 3356081 - 3355999
Alignment:
Q  29 aacttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaa 111  Q
    ||||||||||||| || |  | |||| |||||| | ||||||||||||| |||| |||| |||||||| |||||||| |||||    
T  3356081 aacttctagaaacccacgacttttggaccacaaattacgtgaataaaattttcaatcaaatcttcaaggatttcacaaaaaaa 3355999  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 26947587 - 26947529
Alignment:
Q  56 ccacaagtcacgtgaataaaatcttcagtcaagtcttcaagaatttcacacaaaaatat 114  Q
    ||||||||| | ||||||||||||||| |||| |||||||| |||||||  ||||||||    
T  26947587 ccacaagtctcatgaataaaatcttcaatcaattcttcaaggatttcacgtaaaaatat 26947529  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 34209629 - 34209687
Alignment:
Q  22 aatagtaaacttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatctt 80  Q
    ||||| || |||||||||||||| || |||||| |||||||| | ||||||||||||||    
T  34209629 aatagaaagcttctagaaacacacgcctcttggaccacaagttatgtgaataaaatctt 34209687  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 18388017 - 18388054
Alignment:
Q  193 aacatcttactagaacttcttgttttaacaaaatgcag 230  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  18388017 aacatcttgctagaacttcttgttttaacaaactgcag 18388054  T

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Target: scaffold0328 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 3263 - 3171
Alignment:
Q  157 aagatgtcgtacttacatgtctaggacatctgatacaacatcttactagaacttcttgttttaacaaaatgcagataacacaatacaaaaacc 249  Q
    ||||||||||||||||||||||| || || || | ||||||||| |||||| ||||||||||||||||||||||  ||||||||| |||||||    
T  3263 aagatgtcgtacttacatgtctaagaaatttggtccaacatcttgctagaaattcttgttttaacaaaatgcagccaacacaatataaaaacc 3171  T

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Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 27178 - 27127
Alignment:
Q  31 cttctagaaacacatgcttcttgggccacaagtcacgtgaataaaatcttca 82  Q
    |||||||||||||| |  |||||| |||||||||||||||||||||||||||    
T  27178 cttctagaaacacacgtctcttggaccacaagtcacgtgaataaaatcttca 27127  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 41136756 - 41136869
Alignment:
Q  113 ataatctttcaaaaaagcgaaacaaagtacttaaccttaaagctaagat-gtcgtacttacatgtctaggacatctgatacaacatcttactagaacttc 211  Q
    ||||| |||||| || |||||| ||||||||| || |||||  ||| || ||||||||||||||| ||||| ||||  |||||||   | |||||||||     
T  41136756 ataatatttcaataatgcgaaataaagtacttcactttaaa--taaaattgtcgtacttacatgtttaggatatctagtacaacacactgctagaacttt 41136853  T
Q  212 ttgttttaacaaaatg 227  Q
    || |||||||||||||    
T  41136854 ttattttaacaaaatg 41136869  T

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