View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16060_low_15 (Length: 242)
Name: NF16060_low_15
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 50725636 - 50725843
Alignment:
| Q |
14 |
agatgaaaagaaaatataaaccttgattccaagagtatgggttgaattttagtccttcaccattttggttgactaaaagaggtcctatctcaacaacagc |
113 |
Q |
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| T |
50725636 |
agatgaaaagaaaatataaaccttgattccaagagtatgggttgaattttagtccttcaccattttggttgactaaaagaggtcctatctcaacaacagc |
50725735 |
T |
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| Q |
114 |
accatatccaattgaggagcatccaggtcctaattcaaagacaacgttacaaaatgaaatgtagcatcagaaaataaatatgactatagttagatctcta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50725736 |
accatatccaattgaggagcatccaggtcctaattcaaagacaacattacaaaatgaaatgtagcatcagaaaataaatatgactatagttagatctcta |
50725835 |
T |
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| Q |
214 |
caaccata |
221 |
Q |
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|||||||| |
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| T |
50725836 |
caaccata |
50725843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 50733787 - 50733973
Alignment:
| Q |
14 |
agatgaaaagaaaatataaaccttgattccaagagtatgggttgaattttagtccttcaccattttggttgactaaaagaggtcctatctcaacaacagc |
113 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50733787 |
agatgaaaagaaaatataaaccttgactccaagagtatgggttaaattttagtccttcaccatttttgttgactaaaagaggtcctatctcaacaacagc |
50733886 |
T |
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| Q |
114 |
accatatccaattgaggagcatccaggtcctaattcaaagacaacgttac-aaaatgaaatgtagcatcagaaaataaatatgacta |
199 |
Q |
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|||| ||||||||||||||||||||||||| | |||||| ||| | || ||||||||| ||||||||| ||||||||||||||| |
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| T |
50733887 |
accacctccaattgaggagcatccaggtcctgactcaaaggcaaaatgacaaaaatgaaaagtagcatcactaaataaatatgacta |
50733973 |
T |
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