View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16060_low_2 (Length: 436)
Name: NF16060_low_2
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 48696829 - 48696553
Alignment:
| Q |
12 |
catcatcatagggatcaccatagaagtagtcaggaactaccacataataacctgctgccgcaaccttgtcggcaagattccttcacaaacagatcaacaa |
111 |
Q |
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| T |
48696829 |
catcatcatagggatcaccatagaagtagtcaggaactaccacataataacctgctgccgcaaccttgtcggcaagattccttcacaaacagatcaacaa |
48696730 |
T |
|
| Q |
112 |
aatgtaaaccaggggaacacatgcatttagcaaaacaaagagattgctgacataaaccaaatcagaagaatgacgtataatttaccagagagaaatgtta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48696729 |
aatgtaaaccaggggaacacatgcatttagcaaaacaaagagattgctgacatagaccaaatcagaaaaatgacgtataatttaccagagagaaatgtta |
48696630 |
T |
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| Q |
212 |
tgttgacttnnnnnnncgatgtccaacaccgtatttgtagaaaattcggacacgatgcttttttattagttcgcttt |
288 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48696629 |
tgttgacttaaaaaaacgatgtccaacaccgtatttgtagaaaattcggacacgatgcttttttattagttcgcttt |
48696553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 47167931 - 47167819
Alignment:
| Q |
16 |
atcatagggatcaccatagaagtagtcaggaactaccacataataacctgctgccgcaaccttgtcggcaagattccttcacaaacagatcaacaaaatg |
115 |
Q |
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| T |
47167931 |
atcatagggatcgccattgaagaaatcaggaacaaccacataatacccagttgctgcaaccttgtctgcaaacatccttcacaaacagatcaacaaaatg |
47167832 |
T |
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| Q |
116 |
taaaccaggggaa |
128 |
Q |
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| T |
47167831 |
taaaccaagggaa |
47167819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 48714703 - 48714595
Alignment:
| Q |
16 |
atcatagggatcaccatagaagtagtcaggaactaccacataataacctgctgccgcaaccttgtcggcaagattccttcac-aaacagatcaacaaaat |
114 |
Q |
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|||||||||||| || | |||| |||| ||||| ||||||||||| || | ||| |||||||||||||||| |||||||| ||||| ||||| |||| |
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| T |
48714703 |
atcatagggatctccgttgaagaagtcgggaaccaccacataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacgaaat |
48714604 |
T |
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| Q |
115 |
gtaaaccag |
123 |
Q |
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||||||||| |
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| T |
48714603 |
gtaaaccag |
48714595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 284 - 420
Target Start/End: Original strand, 41080232 - 41080368
Alignment:
| Q |
284 |
gcttttgtcaatgggtcagctagttcatgtctggagcttatgtgattgcgaacaaatttgaggaaactagaacaaacatatttttggataaaatgacaat |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080232 |
gcttttgtcaatgggtcagctagttcatgtctggagcttatgtgattgcgaacaaatttgaggaaactagaacaaacatatttttggataaaatgacaat |
41080331 |
T |
|
| Q |
384 |
caatgtcgatatgtttggaacattcttggcaagtggg |
420 |
Q |
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| T |
41080332 |
caatgtcgatatgtttggaacattcttggcaagtggg |
41080368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 284 - 420
Target Start/End: Original strand, 41091582 - 41091723
Alignment:
| Q |
284 |
gcttttgtcaatgggtcagctagttcatgtctggagct--tatg---tgattgcgaacaaatttgaggaaactagaacaaacatatttttggataaaatg |
378 |
Q |
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|||||| |||||||||||||||||| |||| ||||| | |||| |||||| |||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
41091582 |
gcttttttcaatgggtcagctagttgatgtttggagttgttatgatatgattgtgaacaagtttgaggaaactagaacaaacatattcccggataaaatc |
41091681 |
T |
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| Q |
379 |
acaatcaatgtcgatatgtttggaacattcttggcaagtggg |
420 |
Q |
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| T |
41091682 |
acaatcgaagtcgatatgtttgtaacgttcttggcaaatggg |
41091723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 41101684 - 41101822
Alignment:
| Q |
284 |
gcttttgtcaatgggtcagctagttcatgtctggagct--tatg---tgattgcgaacaaatttgaggaaactagaacaaacatatttttggataaaatg |
378 |
Q |
| |
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|||||| ||||||||| |||||||| |||| ||||||| |||| |||||| |||||| ||||||||||| |||||||||||||| ||||||||| |
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| T |
41101684 |
gcttttttcaatgggtaagctagttgatgtttggagctgatatgatatgattgtgaacaagtttgaggaaacaagaacaaacatattccaggataaaatc |
41101783 |
T |
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| Q |
379 |
acaatcaatgtcgatatgtttggaacattcttggcaagt |
417 |
Q |
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||||| | || |||||||||||||| |||||||||||| |
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| T |
41101784 |
acaattgaagttgatatgtttggaacgttcttggcaagt |
41101822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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