View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16060_low_3 (Length: 429)
Name: NF16060_low_3
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 38213635 - 38214036
Alignment:
| Q |
18 |
gaacagggtatatatagtgttctcaatataccgaaaactgataaggaagtgatacaaactacaaagaatttgatttatttgatcacgtgttatctaagat |
117 |
Q |
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| T |
38213635 |
gaacagggtatatatagtgttctcaatataccgaaaactgataaggaagtggtacaaactacaaagaatgtgatttatttgatcacatgttatctaagat |
38213734 |
T |
|
| Q |
118 |
agacaccaaaata-tatagaggaatatataaaataaaagaatcataacaaattaa-----gatggctattatatgttcttcatcattgatctctcatcag |
211 |
Q |
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| T |
38213735 |
agacaccaaaaaaatatagaggaatatataaaatcaaagaatcataacaaattaaaataagatggctattatatgttcttcatcattgatctctcatcag |
38213834 |
T |
|
| Q |
212 |
aaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatc |
311 |
Q |
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| T |
38213835 |
aaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatc |
38213934 |
T |
|
| Q |
312 |
ttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38213935 |
ttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggta |
38214034 |
T |
|
| Q |
412 |
gt |
413 |
Q |
| |
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|| |
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| T |
38214035 |
gt |
38214036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 77 - 413
Target Start/End: Original strand, 38217913 - 38218255
Alignment:
| Q |
77 |
tacaaagaatttgatttatttgatcacgtgttatctaagatagacaccaaaata-tatagaggaatatataaaataaaagaatcataacaaattaa---- |
171 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |
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| T |
38217913 |
tacaaagaatttgatttatttgatcatgtgctatctaaaatagacaccaaaaaaatatagaggaatatataaaatcaaagaatcataacaaattaaaata |
38218012 |
T |
|
| Q |
172 |
-gatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgca |
270 |
Q |
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| T |
38218013 |
agatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgca |
38218112 |
T |
|
| Q |
271 |
gtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtg |
370 |
Q |
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| T |
38218113 |
gtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtg |
38218212 |
T |
|
| Q |
371 |
gaagagacagaagataactcagtagctttgaaattgcggtagt |
413 |
Q |
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| T |
38218213 |
gaagagacagaagataactcagtagctttgaaattgcggtagt |
38218255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 214 - 413
Target Start/End: Complemental strand, 42991666 - 42991469
Alignment:
| Q |
214 |
ccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatctt |
313 |
Q |
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||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||| |
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| T |
42991666 |
ccttgaacgcctacactcagcaggaataccttgtggaaatcgcttaagatcgttgcagtaattatatatcatgaaatacttctgaacccatctcaatctt |
42991567 |
T |
|
| Q |
314 |
cttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagt |
413 |
Q |
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| T |
42991566 |
cttctaccataagcatcaagctcgttgctctgcaatgcagaatcagagaaggaagtggaagagacag--gataattcagtagctttgaaattgcggtagt |
42991469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 225 - 360
Target Start/End: Complemental strand, 35018348 - 35018213
Alignment:
| Q |
225 |
tacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccata |
324 |
Q |
| |
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|||||||| |||||| ||||| |||||||||||||||||| || || || ||||| ||||| || || || ||||||||||||||||||||||||||||| |
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| T |
35018348 |
tacactcaacaggaacaccttgtgggaatcgcttaagatcattacaatagttataaatcatgaaatacttttgaacccatctcaatcttcttctaccata |
35018249 |
T |
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| Q |
325 |
agcatcaagctcattgctttgcaatgcagaatcaga |
360 |
Q |
| |
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||||||||||||||| ||||| || ||| |||||| |
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| T |
35018248 |
agcatcaagctcatttatttgccattcagcatcaga |
35018213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 42993697 - 42993602
Alignment:
| Q |
77 |
tacaaagaatttgatttatttgatcacgtgttatctaagatagacacc-aaaatatatagaggaatatataaaataaaagaatcataacaaattaa |
171 |
Q |
| |
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||||||||||||||||||||| |||| |||||| ||| | ||||||| |||| ||| ||||||| ||| |||| |||||||||||| ||||||| |
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| T |
42993697 |
tacaaagaatttgatttatttcatcatctgttatataaaacagacaccaaaaaaatacagaggaagatagtaaatcaaagaatcataataaattaa |
42993602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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