View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16060_low_7 (Length: 375)
Name: NF16060_low_7
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 47243333 - 47242990
Alignment:
| Q |
19 |
cacatgtcatcgttcccaaaagacagagggttgttttgggtgaatttccagatctcaatcttcctgattttgattaccaacctactcagaaactccaatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47243333 |
cacatgtcatcgttcccaaaagacagagggttgttttgggtgaatttccagatctcaatcttcctgattttgattaccaacctactcagaaactccaatg |
47243234 |
T |
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| Q |
119 |
tcccgaaaatcccaatctcaacaaatcaatctcaaccctacctttccttaattccaatttggataagccttatgtatcagacatattcgattatcttcaa |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47243233 |
tcccaaaaatcccaatctcaacaaatcaatctcaaccctacctttccttaattccaatttggataagccttatgtatcagacatattcgattatcttcaa |
47243134 |
T |
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| Q |
219 |
accatggagaaaaagagaagaccaatggttggttatatggagaatgttcaaagaggcattacatcaaacatgaggggcacattggttgattggttggttg |
318 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47243133 |
accatggagaaaaagagaagaccaatgtttggttatatggagaatgttcaaagaggcattacatcaaacatgaggggcacattggttgattggttggttg |
47243034 |
T |
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| Q |
319 |
aggttgcagatgaatacacgcttcttccagaaacccttcatctc |
362 |
Q |
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| T |
47243033 |
aggttgcagatgaatacacgcttcttccagaaacccttcatctc |
47242990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 226 - 361
Target Start/End: Complemental strand, 47249955 - 47249820
Alignment:
| Q |
226 |
agaaaaagagaagaccaatggttggttatatggagaatgttcaaagaggcattacatcaaacatgaggggcacattggttgattggttggttgaggttgc |
325 |
Q |
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| T |
47249955 |
agaaaaagagaagaccaatggttggttatcttgagaatgttcagagaggcatttcatcaaacatgagggggacattggttgattggttagttgaggttgc |
47249856 |
T |
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| Q |
326 |
agatgaatacacgcttcttccagaaacccttcatct |
361 |
Q |
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| T |
47249855 |
agatgaatacaagcttcttcccgagacacttcatct |
47249820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 47250323 - 47250223
Alignment:
| Q |
19 |
cacatgtcatcgttcccaaaagacagagggttgttttgggtgaatttccagatctcaatcttcctgattttgattaccaacctactcagaaactccaatg |
118 |
Q |
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|||| ||||| ||||||||||||||||| |||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47250323 |
cacaagtcatggttcccaaaagacagagagttgttttaggtgaattttccgatctcaatcttcctgattttgattatcaacctactcagaaactccaatg |
47250224 |
T |
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| Q |
119 |
t |
119 |
Q |
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| |
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| T |
47250223 |
t |
47250223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 361
Target Start/End: Complemental strand, 47254383 - 47254248
Alignment:
| Q |
226 |
agaaaaagagaagaccaatggttggttatatggagaatgttcaaagaggcattacatcaaacatgaggggcacattggttgattggttggttgaggttgc |
325 |
Q |
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|||||||||||||||||||| |||||||||| ||||| ||||||||||| |||| | || ||||| || | | ||||||||||||||||||||||||| |
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| T |
47254383 |
agaaaaagagaagaccaatgattggttatattgagaaagttcaaagaggtgttactgctaatatgagagggatactggttgattggttggttgaggttgc |
47254284 |
T |
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| Q |
326 |
agatgaatacacgcttcttccagaaacccttcatct |
361 |
Q |
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|| ||||||| |||||| || ||||||||||||| |
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| T |
47254283 |
tgaagaatacaagcttctccctcaaacccttcatct |
47254248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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