View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16060_low_8 (Length: 367)

Name: NF16060_low_8
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16060_low_8
NF16060_low_8
[»] chr2 (5 HSPs)
chr2 (15-202)||(8675147-8675334)
chr2 (207-356)||(8674010-8674159)
chr2 (23-202)||(8720190-8720369)
chr2 (36-202)||(8592337-8592503)
chr2 (265-356)||(8674158-8674246)
[»] chr8 (3 HSPs)
chr8 (17-202)||(23437165-23437350)
chr8 (207-356)||(23438727-23438881)
chr8 (207-356)||(23438502-23438656)
[»] chr6 (2 HSPs)
chr6 (216-356)||(10783002-10783142)
chr6 (318-356)||(10782628-10782666)
[»] chr4 (1 HSPs)
chr4 (54-180)||(55411516-55411642)
[»] chr1 (2 HSPs)
chr1 (310-356)||(50508304-50508350)
chr1 (286-356)||(50509175-50509248)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 8675334 - 8675147
Alignment:
Q  15 actaattccaaaatttagaccaatatttatctctctttgtaaacctttgcaggtaacaattgacagtcgctggttctttgaaggttataaagagggaaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  8675334 actaattccaaaatttagaccaatatttatctctctttgtaaacctttgcaggtaacaattgacactcgccggttctttgaaggttataaagagggaaga 8675235  T
Q  115 agatatataaatttctggccagagatgctcaagctaaaatactggccaccttatgatgagtttgaaaatgtccttccgcgccattgtg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8675234 agatatataaatttctggccagagatgctcaagctaaaatactggccaccttatgatgagtttgaaaatgtcctgccgcgccattgtg 8675147  T

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Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 207 - 356
Target Start/End: Complemental strand, 8674159 - 8674010
Alignment:
Q  207 caatttaatatcaaatattgaatgtaatcaattctgttagcgcaagatatataaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaacac 306  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8674159 caatttaatatcaaatattgaatgtaatcaattccgttagcacaagatatataaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaacac 8674060  T
Q  307 atcaattaaaatatttttagaatgaaaacaaaatagatttacctcttctt 356  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8674059 atcaattaaaatatttttagaacgaaaacaaaatagatttacctcttctt 8674010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 8720369 - 8720190
Alignment:
Q  23 caaaatttagaccaatatttatctctctttgtaaacctttgcaggtaacaattgacagtcgctggttctttgaaggttataaagagggaagaagatatat 122  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||    
T  8720369 caaaatttaggccaatatttatctctctatgtaaacctttgcaggtaacaattgacactcgccagttctttgaaggttatcaagagggaagaagatatat 8720270  T
Q  123 aaatttctggccagagatgctcaagctaaaatactggccaccttatgatgagtttgaaaatgtccttccgcgccattgtg 202  Q
    |||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||| | || ||||||||||    
T  8720269 aaatttctggccggagatgctcaagctaaaagattggcccccttatgatgagtttgaaaatgtcttgccacgccattgtg 8720190  T

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Target: chr2; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 36 - 202
Target Start/End: Complemental strand, 8592503 - 8592337
Alignment:
Q  36 aatatttatctctctttgtaaacctttgcaggtaacaattgacagtcgctggttctttgaaggttataaagagggaagaagatatataaatttctggcca 135  Q
    ||||||||||||||| | ||||||||||||||||  |||| ||| |||   ||||||  |||||||||||||||| ||||||||| ||||||| ||||||    
T  8592503 aatatttatctctctatataaacctttgcaggtagaaattaacactcgtcagttcttcaaaggttataaagaggggagaagatatgtaaatttatggcca 8592404  T
Q  136 gagatgctcaagctaaaatactggccaccttatgatgagtttgaaaatgtccttccgcgccattgtg 202  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||| || | |||||||||||||    
T  8592403 gagatgctcaagctaaaagactggccaccttctgatgagtttgaaaatctcttgccgcgccattgtg 8592337  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 8674158 - 8674246
Alignment:
Q  265 tgtgtatctactattgaatgcttaaaaatattttcaaaacaca--tcaattaaaatatttttagaatgaaaacaaaatagatttacctcttctt 356  Q
    ||||||||||||||||||||||||    |||||||||||||||  ||||| ||| ||||| |||||||||||||||||||||||||||||||||    
T  8674158 tgtgtatctactattgaatgctta----tattttcaaaacacacatcaat-aaactatttctagaatgaaaacaaaatagatttacctcttctt 8674246  T

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Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 23437165 - 23437350
Alignment:
Q  17 taattccaaaatttagaccaatatttatctctctttgtaaacctttgcaggtaacaattgacagtcgctggttctttgaaggttataaagagggaagaag 116  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||||   |||||||||||||||||||||||||||||    
T  23437165 taattctaaaatttagaccaatatttatctctctatataaacctttgcaggtaaaaattgacactcgccaattctttgaaggttataaagagggaagaag 23437264  T
Q  117 atatataaatttctggccagagatgctcaagctaaaatactggccaccttatgatgagtttgaaaatgtccttccgcgccattgtg 202  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | |||||||||||||    
T  23437265 atatataaatttctggccagagatgctcaggctaaaagactggccaccttatgatgagtttgaaaatgtcttgccgcgccattgtg 23437350  T

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Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 207 - 356
Target Start/End: Original strand, 23438727 - 23438881
Alignment:
Q  207 caatttaatatcaaatattg-----aatgtaatcaattctgttagcgcaagatatataaaaaatgtgtatctactattgaatgcttaaaaatattttcaa 301  Q
    |||||| |||||||||||||     |||||||||||||| ||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  23438727 caatttgatatcaaatattgcttctaatgtaatcaattccgttagtgcaagatatacaaaaaatgtatatctactaatgaatgcttaaaaatattttcaa 23438826  T
Q  302 aacacatcaattaaaatatttttagaatgaaaacaaaatagatttacctcttctt 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23438827 aacacatcaattaaaatatttttagaatgaaaacaaaatagatttacctcttctt 23438881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 207 - 356
Target Start/End: Complemental strand, 23438656 - 23438502
Alignment:
Q  207 caatttaatatcaaatattg-----aatgtaatcaattctgttagcgcaagatatataaaaaatgtgtatctactattgaatgcttaaaaatattttcaa 301  Q
    |||||| |||||||||||||     |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  23438656 caatttgatatcaaatattgcttctaatgtaatcaattccgttagcgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaatattttcca 23438557  T
Q  302 aacacatcaattaaaatatttttagaatgaaaacaaaatagatttacctcttctt 356  Q
    || ||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  23438556 aagacatcaattaaaatatttttataatgaaagcaaaatagatttacctcttctt 23438502  T

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Target: chr6 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 216 - 356
Target Start/End: Original strand, 10783002 - 10783142
Alignment:
Q  216 atcaaatattgaatgtaatcaattctgttagcgcaagatatataaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaacacatcaattaa 315  Q
    |||||||| ||||| |||| ||||| ||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10783002 atcaaataatgaatttaataaattccgttagtgcaagatatacaaaaaatgggtatctactattgaatgcttaaaaatattttcaaaacacatcaattaa 10783101  T
Q  316 aatatttttagaatgaaaacaaaatagatttacctcttctt 356  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  10783102 aatatttttagaatgaaaacaacatagatttacctcttctt 10783142  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 356
Target Start/End: Original strand, 10782628 - 10782666
Alignment:
Q  318 tatttttagaatgaaaacaaaatagatttacctcttctt 356  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  10782628 tatttttagaataaaaacaaaatagatttacctcttctt 10782666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 54 - 180
Target Start/End: Complemental strand, 55411642 - 55411516
Alignment:
Q  54 taaacctttgcaggtaacaattgacagtcgctggttctttgaaggttataaagagggaagaagatatataaatttctggccagagatgctcaagctaaaa 153  Q
    |||||||||||||||  ||||| | | |||   ||||||| ||||||||| ||||||||||| ||||  |||| |||||||||||||||| |||||||||    
T  55411642 taaacctttgcaggttgcaattaatactcgtatgttctttaaaggttatatagagggaagaacatatggaaatctctggccagagatgctgaagctaaaa 55411543  T
Q  154 tactggccaccttatgatgagtttgaa 180  Q
     ||||||| |||| |||| | ||||||    
T  55411542 gactggcccccttctgataaatttgaa 55411516  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 50508350 - 50508304
Alignment:
Q  310 aattaaaatatttttagaatgaaaacaaaatagatttacctcttctt 356  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  50508350 aattaaaatatttttagaatgaaaacaaaatagatttacctcatctt 50508304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 50509248 - 50509175
Alignment:
Q  286 ttaaaaatattttcaaaacac---atcaattaaaatatttttagaatgaaaacaaaatagatttacctcttctt 356  Q
    ||||||| |||||||||| ||   || |||| || |||||||||||| ||||||||||||||||||||||||||    
T  50509248 ttaaaaacattttcaaaatactatatgaattgaattatttttagaataaaaacaaaatagatttacctcttctt 50509175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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