View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16060_low_9 (Length: 364)
Name: NF16060_low_9
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_low_9 |
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| [»] scaffold0929 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 56 - 353
Target Start/End: Original strand, 6383805 - 6384102
Alignment:
| Q |
56 |
atcatatgatgtttttcagtatgtaatcaagtctttttcttgtcgtttagggagtttctagtagttttatagtgagttactcatggtttgagaaagtgta |
155 |
Q |
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| T |
6383805 |
atcatatgatgtttttcagtatgtaatcaagtctttttcttgtcgtttaaggagtttctagtagttttatagtgagttactcatggtttgagaaagtgta |
6383904 |
T |
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| Q |
156 |
acattttgttttgagttgttgtaattctcattcttccctaactaggaaactctagaagcatattgagcctttttgggtgtataaatgattgaagtaagtc |
255 |
Q |
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| T |
6383905 |
acattttgttttgagttgttgtaattctcattcttccctaactaggaaactctagaagcatattgagcctttttgggtgtataaatgattgaagtaagtc |
6384004 |
T |
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| Q |
256 |
aaccaagtcatcttatggaagttatggaagttaaaagaccaagtacaacgaagcatataaagaccaaataacttggagaaattttgtctcaagttcat |
353 |
Q |
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| T |
6384005 |
aaccaagtcatcttatggaagttatggaagttaaaagaccaagtacaacgaagcatataaagaccaaataacttggagaaattttgtcccaagttcat |
6384102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 6383694 - 6383735
Alignment:
| Q |
16 |
aacaccttgtcgaaaaggtatgttatttccttggttgaaaat |
57 |
Q |
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| T |
6383694 |
aacaccttgtcgaaaaggtatgttatttccttggttgaaaat |
6383735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 343
Target Start/End: Original strand, 6370266 - 6370374
Alignment:
| Q |
234 |
gtataaatgattgaagtaagtcaaccaagtcatcttatggaagttatggaagttaaaagaccaagtacaacgaagcatataaagaccaaataacttggag |
333 |
Q |
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| T |
6370266 |
gtataaatcatgaaagtaagtcaaccaagacatctcttgaaagttatgggagctagaagatcaa-tacaatgaaacatatgaagactaaataatttgggg |
6370364 |
T |
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| Q |
334 |
aaattttgtc |
343 |
Q |
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| T |
6370365 |
gaattttgtc |
6370374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 343
Target Start/End: Original strand, 6378731 - 6378839
Alignment:
| Q |
234 |
gtataaatgattgaagtaagtcaaccaagtcatcttatggaagttatggaagttaaaagaccaagtacaacgaagcatataaagaccaaataacttggag |
333 |
Q |
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| T |
6378731 |
gtataaatcatgaaagtaagtcaaccaagacatctcttgaaagttatgggagctagaagatcaa-tacaatgaaacatatgaagactaaataatttgggg |
6378829 |
T |
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| Q |
334 |
aaattttgtc |
343 |
Q |
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| T |
6378830 |
gaattttgtc |
6378839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 1157 - 1196
Alignment:
| Q |
158 |
attttgttttgagttgttgtaattctcattcttccctaac |
197 |
Q |
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| T |
1157 |
attttgttttgagttattgtaattctctttcttccctaac |
1196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 1228 - 1324
Alignment:
| Q |
234 |
gtataaatgattgaagtaagtcaaccaagtcatcttatggaagttatggaagttaaaagaccaagtacaacgaagcatataaagaccaaataacttgg |
331 |
Q |
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| T |
1228 |
gtataaatcatgaaagtaagtcaaccaagatatctcttgaaagttatggaagccagaagatcaa-tacaatgaaacatatgaagaccaaataacttgg |
1324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 33148704 - 33148757
Alignment:
| Q |
255 |
caaccaagtcatcttatggaagttatggaagttaaaagaccaagtacaacgaag |
308 |
Q |
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|||||||||||||| ||| ||||||||||||||| | || ||||||||| |||| |
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| T |
33148704 |
caaccaagtcatctcatgcaagttatggaagttagatgatcaagtacaatgaag |
33148757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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