View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16061_high_1 (Length: 551)

Name: NF16061_high_1
Description: NF16061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16061_high_1
NF16061_high_1
[»] chr8 (14 HSPs)
chr8 (23-539)||(14727555-14728067)
chr8 (201-346)||(15329839-15329984)
chr8 (201-346)||(15510208-15510353)
chr8 (201-346)||(28865933-28866078)
chr8 (216-382)||(28693133-28693300)
chr8 (198-381)||(30648837-30649020)
chr8 (194-376)||(26089184-26089369)
chr8 (155-310)||(29552811-29552966)
chr8 (240-376)||(27714299-27714435)
chr8 (237-317)||(26090238-26090318)
chr8 (474-535)||(26089059-26089120)
chr8 (465-539)||(28865756-28865830)
chr8 (474-539)||(30648692-30648757)
chr8 (288-346)||(31039553-31039611)
[»] chr1 (2 HSPs)
chr1 (116-395)||(26086281-26086563)
chr1 (464-538)||(26086619-26086693)
[»] chr7 (4 HSPs)
chr7 (220-362)||(6610854-6610999)
chr7 (200-375)||(17292587-17292762)
chr7 (464-533)||(6611070-6611139)
chr7 (464-533)||(17292838-17292907)
[»] chr3 (2 HSPs)
chr3 (234-381)||(4819862-4820009)
chr3 (464-539)||(4819717-4819792)


Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 23 - 539
Target Start/End: Complemental strand, 14728067 - 14727555
Alignment:
23 gacatctgtaggggatatctgaaacatagaaaccaggtaacaaggcaaaaacgaactcatcagaatgtacacagtcagactggattgcgtacaacttgag 122  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||   | || ||||||||||| |||||||    
14728067 gacatctgtaggggatatctgaagcatacaaatcaggtaacaaggcaaaaacgaactcatcagagtgtacacaaatataccggattgcgtactacttgag 14727968  T
123 gccataataactattgttataactgatgtgccaaaggaaaccatattccaaattgaaaacacgaagaaaagatatcctgacaagacagatcttccaacat 222  Q
    |||||||||| |||||||||| |||||| |  |||||||| || ||| |||||||||||   | ||||||||||||||||||||||||||||||||||||    
14727967 gccataataattattgttatagctgatgagagaaaggaaaacagattgcaaattgaaaattgggagaaaagatatcctgacaagacagatcttccaacat 14727868  T
223 tttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaagctgattg 322  Q
    ||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
14727867 tttttggggtggaaatagtagaattggaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaaactgattg 14727768  T
323 gtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgtcatgtcacttctagtgcgagttatctcagttaccaattta 422  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
14727767 gtacatggcagttgcaataagagtggcgactatcaaccaaatgttgcgttgctcttctgtcatgtcacttctagtgcgagttatctcagataccaattta 14727668  T
423 ttactcatagttttggttgtggccattaacctcaaactatgtatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaat 522  Q
    ||||||||||||||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14727667 ttactcatagttttggttgtggccattaacctcaacc----tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaat 14727572  T
523 aatatactcttcatctc 539  Q
    |||||||||||||||||    
14727571 aatatactcttcatctc 14727555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 201 - 346
Target Start/End: Complemental strand, 15329984 - 15329839
Alignment:
201 gacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccac 300  Q
    ||||||| |||| | |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
15329984 gacaagatagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccac 15329885  T
301 cagggggactcaaagctgattggtacatggcagttgcaacaagagt 346  Q
    |||||||||||| || ||||| |||||||| |||||||| ||||||    
15329884 cagggggactcagagttgattcgtacatggtagttgcaataagagt 15329839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 201 - 346
Target Start/End: Complemental strand, 15510353 - 15510208
Alignment:
201 gacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccac 300  Q
    ||||||| |||| | |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
15510353 gacaagatagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccac 15510254  T
301 cagggggactcaaagctgattggtacatggcagttgcaacaagagt 346  Q
    |||||||||||| || ||||| |||||||| |||||||| ||||||    
15510253 cagggggactcagagttgattcgtacatggtagttgcaataagagt 15510208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 201 - 346
Target Start/End: Complemental strand, 28866078 - 28865933
Alignment:
201 gacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccac 300  Q
    |||||||||||| | |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
28866078 gacaagacagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagaactaatctgataaaatccac 28865979  T
301 cagggggactcaaagctgattggtacatggcagttgcaacaagagt 346  Q
    |||||||||||| || ||||| | |||||| |||||||| ||||||    
28865978 cagggggactcagagttgattcgaacatggtagttgcaataagagt 28865933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 216 - 382
Target Start/End: Original strand, 28693133 - 28693300
Alignment:
216 ccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcact-aatctgataaactccaccagggggactcaaa 314  Q
    ||||||||| ||||||| ||||||||||| | |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||  ||| |    
28693133 ccaacatttgctggggtagaaatagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaaatctgataaattccaccagggggtgtcaga 28693232  T
315 gctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgt 382  Q
    |||||||   |||||| |||||||| |||||| |||| ||| ||||||||| ||||||| || |||||    
28693233 gctgattcaaacatggtagttgcaataagagtcgcgactattaaccaaatgttgcgttgatcctctgt 28693300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 198 - 381
Target Start/End: Complemental strand, 30649020 - 30648837
Alignment:
198 cctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactc 297  Q
    ||||||||||| ||| | ||| ||||| ||||||  ||||| ||| |||  |||||||||||||||   ||| ||||||||||||||| |||||||| ||    
30649020 cctgacaagactgatttcccagcatttcctggggcagaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattc 30648921  T
298 caccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctg 381  Q
    ||||||||||||||||  ||||||| || |||||||| ||||||||||| || | |||||||||| || | |||||||| ||||    
30648920 caccagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctg 30648837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 26089369 - 26089184
Alignment:
194 atatcctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattg---tcaccagcactaatctga 290  Q
    |||||||||||| |||||| | ||| ||||| |||| || |||||||||||||  |||||||||||||||| |  ||||   |||| |||||||| ||||    
26089369 atatcctgacaaaacagatttcccagcatttcctggagtagaaatagtagaattggaggaagtgatgttcacaccattgccatcactagcactaacctga 26089270  T
291 taaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctc 376  Q
    |||| ||||| ||||||||||||  ||||||| || || ||||||||||||||||| || | |||||||||| || | ||||||||    
26089269 taaattccactagggggactcaatcctgattgataaatcgcagttgcaacaagagtcgcaactatcaaccaactgttacgttgctc 26089184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 29552966 - 29552811
Alignment:
155 aaaggaaaccatattccaaattgaaaacacgaagaaaagatatcctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaa 254  Q
    ||||||||| |||||||||| |||||||   ||||||  |  | |||||| ||| ||| ||||| ||||| || |||| |||||||||||||  ||||||    
29552966 aaaggaaactatattccaaaatgaaaaccgaaagaaatcaacttctgacatgaccgattttccagcatttcctagggtagaaatagtagaattggaggaa 29552867  T
255 gtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggact 310  Q
    |||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||    
29552866 gtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggact 29552811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 240 - 376
Target Start/End: Complemental strand, 27714435 - 27714299
Alignment:
240 gtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaagctgattggtacatggcagttgcaa 339  Q
    |||||||  |||||||| ||||| | ||||||||||| |||| ||| ||||||||||||||||  |||| |||| |||||||| |||||||| |||||||    
27714435 gtagaattagaggaagtaatgttgacattattgtcactagcattaacctgataaactccaccaacgggagtcaatgctgattgatacatggctgttgcaa 27714336  T
340 caagagtggcgattatcaaccaaatgctgcgttgctc 376  Q
    ||||||| || | ||||| |||| || ||||||||||    
27714335 caagagtcgcaactatcatccaagtgttgcgttgctc 27714299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 26090318 - 26090238
Alignment:
237 atagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaagct 317  Q
    ||||||||||   |||||||||||||| |||||||||||||| | ||||||||||||||||||||| ||||| ||||||||    
26090318 atagtagaattgaaggaagtgatgttccaattattgtcaccaaccctaatctgataaactccaccatggggagtcaaagct 26090238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 474 - 535
Target Start/End: Complemental strand, 26089120 - 26089059
Alignment:
474 tgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttca 535  Q
    |||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||    
26089120 tgtgggagcatcagtgatttctatgctaggttttgctccaaaacttaataatatactcttca 26089059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 465 - 539
Target Start/End: Complemental strand, 28865830 - 28865756
Alignment:
465 atgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctc 539  Q
    ||||||||||||||||||||| | |||||||| |||  |||||| |||| |||| |||||||||||||| |||||    
28865830 atgtgcacgtgtgggagcatctgtgacttctaagcttggttttgatccagcactgaataatatactcttaatctc 28865756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 539
Target Start/End: Complemental strand, 30648757 - 30648692
Alignment:
474 tgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctc 539  Q
    |||||||  ||||| |||||||  |||| |||||| |||||||||||||||||||||||| |||||    
30648757 tgtgggataatcagtgacttctgagctaggttttgttccaacacttaataatatactcttgatctc 30648692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 31039553 - 31039611
Alignment:
288 tgataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagt 346  Q
    ||||||||||||||||||||||| |  |||||||| ||| | |||||||||| ||||||    
31039553 tgataaactccaccagggggactaagtgctgattgatacgtcgcagttgcaataagagt 31039611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 116 - 395
Target Start/End: Original strand, 26086281 - 26086563
Alignment:
116 acttgaggccataataactattgttataactgatgtgccaaaggaaaccatattccaaattgaaaacacgaagaaaagatatcctgacaagacagatctt 215  Q
    |||||||| |||||||| ||||||| ||| ||||||   |||||||| ||||||  ||| ||||||||   |||||| |  | |||||||||||||| |     
26086281 acttgaggtcataataattattgttgtaattgatgtataaaaggaaagcatatttgaaactgaaaacagacagaaaatagcttctgacaagacagatttc 26086380  T
216 ccaacattttctggggtg---gaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactca 312  Q
    ||||||||| || ||||    |||||||||||||  |||||||||||||||||| |||||||||| |||||| || |||||||||||||||||||| |||    
26086381 ccaacatttccttgggtactagaaatagtagaattggaggaagtgatgttcaaactattgtcaccggcactactcggataaactccaccagggggagtca 26086480  T
313 aagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgtcatgtcacttcta 395  Q
     ||||||||  ||||||| ||| |||| |||||  |||| ||| ||||||||| |||||||||| ||||||||||||||||||    
26086481 gagctgattcatacatggtagtcgcaataagagctgcgactattaaccaaatgttgcgttgctcctctgtcatgtcacttcta 26086563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 464 - 538
Target Start/End: Original strand, 26086619 - 26086693
Alignment:
464 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatct 538  Q
    |||||||| |||||||||||||||||||||| ||||||  |||||||||  | ||||||||||||||||| ||||    
26086619 tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatct 26086693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 220 - 362
Target Start/End: Original strand, 6610854 - 6610999
Alignment:
220 cattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtca---ccagcactaatctgataaactccaccagggggactcaaagc 316  Q
    |||||||||| || ||||||||||||| ||||||||||||||||| |  |||||||   ||| |||||| |||||||| ||||||||| ||||||||  |    
6610854 cattttctggagtagaaatagtagaatttgaggaagtgatgttcacaccattgtcatcaccaacactaacctgataaattccaccaggaggactcaatcc 6610953  T
317 tgattggtacatggcagttgcaacaagagtggcgattatcaaccaa 362  Q
    |||||| || |||||||||||||| ||||| || ||||||||||||    
6610954 tgattgatagatggcagttgcaacgagagtcgcaattatcaaccaa 6610999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 200 - 375
Target Start/End: Original strand, 17292587 - 17292762
Alignment:
200 tgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactcca 299  Q
    ||||||||| ||| | |||||||||| |||||| ||||| |||||||   |||||||| |||||| ||||||||||| || ||||| ||||||||| |||    
17292587 tgacaagaccgatttcccaacattttttggggtagaaattgtagaattgaaggaagtgttgttcacattattgtcactagtactaacctgataaacacca 17292686  T
300 ccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgct 375  Q
    |||  |||| | |  | |||||| ||  |||| |||||||||||||| || |||||||||||| || |||||||||    
17292687 ccaacgggagttagcgttgattgataggtggctgttgcaacaagagtcgcaattatcaaccaagtgttgcgttgct 17292762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 533
Target Start/End: Original strand, 6611070 - 6611139
Alignment:
464 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactctt 533  Q
    |||||||| ||||||||  || || |||||||| |||| ||||||||||||| || ||||| ||||||||    
6611070 tatgtgcaagtgtgggattatgagtgacttctaagctaggttttgctccaactctgaataacatactctt 6611139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 533
Target Start/End: Original strand, 17292838 - 17292907
Alignment:
464 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactctt 533  Q
    |||||||| |||||||||||||   |||||||| |||| |||||| |||| |||| ||||| ||||||||    
17292838 tatgtgcaagtgtgggagcatccatgacttctaagctaggttttgatccagcactaaataagatactctt 17292907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 234 - 381
Target Start/End: Complemental strand, 4820009 - 4819862
Alignment:
234 gaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaagctgattggtacatggcag 333  Q
    |||||||||||||  | ||| |||||||||||| || |||||| |||| ||| ||||||||||||||| || |||  ||  ||||||||  |  ||||||    
4820009 gaaatagtagaattggtggacgtgatgttcaaactactgtcactagcattaacctgataaactccacctggtggagacattgctgattgaaaggtggcag 4819910  T
334 ttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctg 381  Q
    ||||||||||||| || | |||||||||| || |||||||||| ||||    
4819909 ttgcaacaagagtcgcaactatcaaccaagtgttgcgttgctcctctg 4819862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 539
Target Start/End: Complemental strand, 4819792 - 4819717
Alignment:
464 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctc 539  Q
    |||||||| ||||||| ||||  | |||||| | || | ||||||||||||||||| ||||||||||||| |||||    
4819792 tatgtgcaagtgtgggtgcattggtgacttccaagccaggttttgctccaacacttgataatatactcttgatctc 4819717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University