View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16061_high_5 (Length: 237)
Name: NF16061_high_5
Description: NF16061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16061_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 50958015 - 50957795
Alignment:
| Q |
1 |
gtttgcataccgcctctgttatgcctcgatttgttcttcattggtttgaggactgttgctagacattgttggattctgcaagctctatagtctttggcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50958015 |
gtttgcataccgcctctgttatgcctcgatttgttcttcattggtttgaggactgttgctagacattgttggattctgcaagctctgtagtctttggcca |
50957916 |
T |
|
| Q |
101 |
gcttggccacttctgcatcagatagtcttttaacactcatgttttctaagtgtaattttaaggaccttggtacgttaccccaatttgaactacctccatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50957915 |
gcttggccacttctgcatcagatagtcttttaacactcatgttttctaagtgtaattttaaggaccttggtacgttaccccaatttgaactacctccatt |
50957816 |
T |
|
| Q |
201 |
tatcagatttagtgtattgat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
50957815 |
tatcagatttagtgtattgat |
50957795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 50948756 - 50948625
Alignment:
| Q |
30 |
tttgttcttcattggtttgaggactgttgctagacattgttggattctgcaagctctatagtctttggccagcttggccacttctgcatcagatagtctt |
129 |
Q |
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||||| ||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||||| ||| ||||||| |||||| |
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| T |
50948756 |
tttgtacttcattggcttgaggactgttgccagacattgttggattttgcaagctctatagtcttctgccagattggccacctcttcatcagagagtctt |
50948657 |
T |
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| Q |
130 |
ttaacactcatgttttctaagtgtaattttaa |
161 |
Q |
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||||||||||||||||||| || ||||||||| |
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| T |
50948656 |
ttaacactcatgttttctatgtataattttaa |
50948625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 15856250 - 15856109
Alignment:
| Q |
19 |
ttatgcctcgatttgttcttcattggtttgaggactgttgctagacattgttggattctgcaagctctatagtctttggccagcttggccacttctgcat |
118 |
Q |
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||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||| || ||||| |||||||| ||||||||| ||||||||| ||| |
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| T |
15856250 |
ttatgcctcattttgttcttcactggcttgaggactgttgctacacattgttggattatggaagctttatagtctctggccagctgtgccacttctacat |
15856151 |
T |
|
| Q |
119 |
cagatagtcttttaacactcatgttttctaagtgtaatttta |
160 |
Q |
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||| |||||||||||||||||||||||||| |||||||||| |
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| T |
15856150 |
cagtgagtcttttaacactcatgttttctaactgtaatttta |
15856109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 33632063 - 33631847
Alignment:
| Q |
1 |
gtttgcataccgcctctgttatgcctcgatttgttcttcattggtttgaggactgttgctagacattgttggattctgcaagctctatagtctttggcca |
100 |
Q |
| |
|
||||||| ||| ||||| ||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |||| |
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| T |
33632063 |
gtttgcacaccccctctactatgcctcgttttgtacttcattggcttgaggactgttgccagacattgttggattttgcaagctctatagtcttctgcca |
33631964 |
T |
|
| Q |
101 |
gcttggccacttctgcatcagatagtcttttaacactcatgttttctaagtgtaattttaaggaccttggtacgttaccccaatttgaactacctccatt |
200 |
Q |
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| |||||||||||| ||||||| |||||||||||||| |||||||||| | ||||||||| | | | | |||||||| ||||| || ||||| || |
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| T |
33631963 |
gattggccacttcttcatcagagagtcttttaacactaatgttttctacatagaattttaagtaagctcttgcattaccccattttgagctccctccttt |
33631864 |
T |
|
| Q |
201 |
tatcagatttagtgtat |
217 |
Q |
| |
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||||||||||| ||||| |
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|
| T |
33631863 |
tatcagatttactgtat |
33631847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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