View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16061_low_2 (Length: 352)
Name: NF16061_low_2
Description: NF16061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16061_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 34519612 - 34519882
Alignment:
| Q |
21 |
tctctcattctctcgttttacaaggatacatcggctaatatactactactatcacaaagtagttacgaagttagttataaccaaaacatcgacttacttg |
120 |
Q |
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| T |
34519612 |
tctctcattctctcgttttacaaggatacatcggctaatatactactactatcacaaagtagttacgaagttagttataaccaaaacaccgacttacttg |
34519711 |
T |
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| Q |
121 |
tccagaaagctgaacaggcctaactaattaacttacataagatctactagaactaaacctcggttaatcagtttggaggttcattaatttcagagac--- |
217 |
Q |
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| T |
34519712 |
tccagaaagctgaacaggcctaactaattaacttacataagatctactagaactaaacctcggttaatcagtttggaggttcattaatttcagagactaa |
34519811 |
T |
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| Q |
218 |
--taaattgtatgttctcaacaacttttagggattaaaaccaatgattcgttaatttcagagactagctaa |
286 |
Q |
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| T |
34519812 |
attaaattgtatgttctcaacaacttttagggattaaaaccaatgattcgttaatttcagagactagctaa |
34519882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 34531112 - 34531363
Alignment:
| Q |
29 |
tctctcgttttacaaggatacatcggctaatatactactactatcacaaagtagttacgaagttagttataaccaaaacatcgacttacttgtccagaaa |
128 |
Q |
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| T |
34531112 |
tctctagttttacaaggatacatcggctaatatactactcctatcacagagtagttatgaagttggttataactgaaacaccgactaacttgtccaaaaa |
34531211 |
T |
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| Q |
129 |
gctgaacaggcctaactaattaactt-acataagatctactagaactaaa------------------cctcggttaatcagtttggaggttcattaatt |
209 |
Q |
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| T |
34531212 |
gctaaacaggtctaactaattaacttaacagaagatctactagaactaaactaacacaaattgaaaaccctcggttaatcagtttggaggttcgttaaat |
34531311 |
T |
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| Q |
210 |
tcagagactaaattgtatgttctcaacaacttttagggattaaaaccaatgatt |
263 |
Q |
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| T |
34531312 |
ccaaagaacaaattgta--ttctcaacaacttttagggattaaaaccagtgatt |
34531363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 50746343 - 50746282
Alignment:
| Q |
40 |
acaaggatacatcggctaatatactactactatcacaaagtagttacgaagttagttataac |
101 |
Q |
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| T |
50746343 |
acaaggatacatcagtttatatactacccatattacaaagtagttacaaagttagttataac |
50746282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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