View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16061_low_4 (Length: 247)
Name: NF16061_low_4
Description: NF16061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16061_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 50957999 - 50958237
Alignment:
| Q |
1 |
agaggcggtatgcaaacagtaacaaaccaaaataagaaggaccaagggatatttacaaagtgtgatcaatttgggaaggctgcaagagggggtcgtcgcc |
100 |
Q |
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| T |
50957999 |
agaggcggtatgcaaacagtaacaaaccaaaataagaaggaccaagggatatttacaaagtgtgatcaatttgggaaggctgcaagagggggtcatcgcc |
50958098 |
T |
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| Q |
101 |
gtaaccgtagaaggaatggaagggggagggaaaatttccagcaacagtatttttaatttaatctacataaacatgctatgatcaatagtttatgcaaatt |
200 |
Q |
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| T |
50958099 |
gtaaccgtagaaggaatggaagggggagggaaaatttccagcaacagtatttttaatataatctacataaacatgctatgatcactagtttatgcaaatt |
50958198 |
T |
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| Q |
201 |
taagcttgttgttttgttcttattcatactagatccttt |
239 |
Q |
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| T |
50958199 |
taagcttgttgttttgttcttattcatactagatccttt |
50958237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 15856458 - 15856509
Alignment:
| Q |
186 |
tagtttatgcaaatttaagcttgttgttttgttcttattcatactagatcct |
237 |
Q |
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| T |
15856458 |
tagtttatgcaactttaagcttgtcgttttgttcttattcataaaagatcct |
15856509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 15856346 - 15856404
Alignment:
| Q |
104 |
accgtagaaggaatggaagggggagggaaaatttccagcaacagtatttttaatttaat |
162 |
Q |
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| T |
15856346 |
accgtagaaggaatgtaagggggaggggaaaactccagcaacagtctttttaatataat |
15856404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 8155334 - 8155381
Alignment:
| Q |
44 |
aagggatatttacaaagtgtgatcaatttgggaaggctgcaagagggg |
91 |
Q |
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| T |
8155334 |
aagggatatttacaaagagtgatcgatttgtgaaggctgcaagagggg |
8155381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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