View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16062_low_1 (Length: 540)
Name: NF16062_low_1
Description: NF16062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16062_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 253 - 465
Target Start/End: Original strand, 54085019 - 54085233
Alignment:
| Q |
253 |
atggttgatgccatgcatcatgtgtgttttagtaataaaaatcagttgtgtttcaattcaacctttgttttagtcttttcctgttatgattccaaatttc |
352 |
Q |
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| T |
54085019 |
atggttgatgccatgcatcatgtgtgttttagtaataaaaatcagttgtgtttcaattcaacctttgttttagtcttttcctgttatgattccaaatttc |
54085118 |
T |
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| Q |
353 |
caatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctgaattcagatatat--aaaagag |
450 |
Q |
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| T |
54085119 |
caatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctgaattcagatatataaaaaagag |
54085218 |
T |
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| Q |
451 |
tattacttaattaag |
465 |
Q |
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||||||||||||||| |
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| T |
54085219 |
tattacttaattaag |
54085233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 72 - 267
Target Start/End: Original strand, 54084802 - 54084997
Alignment:
| Q |
72 |
ggtggtggaggctatgggcagggctctggttatggtgaaggtggtggtgattaattaaggaaaagcatgaattgattgacaaatatatagataatacggt |
171 |
Q |
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| T |
54084802 |
ggtggtggaggctatgggcagggctctggttatggtgaaggtggtggtgattaattaaggaaaagcatgaattgattgacaaatatatagataatacggt |
54084901 |
T |
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| Q |
172 |
tgatttaaataaaagaaaatcttagactgtttggtgcaataaattagtagctggtgtgtacctaaataatgaacatgttagatggttgatgccatg |
267 |
Q |
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| T |
54084902 |
tgatttaaataaaagaaaatcttagactgtttggtgcaataaattagtagctggtgtgtacctaaataatgaacatgttagatggttgatgccatg |
54084997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 235 - 444
Target Start/End: Original strand, 54081596 - 54081802
Alignment:
| Q |
235 |
aaataatgaacatgttagatggttgatgccatgcatcatgtgtgttttagt-aataaaaatcagttgtgtttcaatt-caaccttt-gttttagtctttt |
331 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||||| |||||||| ||||||||||| | |
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| T |
54081596 |
aaataatgaacacgttagatggttgattccatgcatcatgtgtgttttagtgaagaaaaattagttgtgtttcaatttcaaccttttgttttagtcttct |
54081695 |
T |
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| Q |
332 |
cctgttatgattccaaatttccaatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctga |
431 |
Q |
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| T |
54081696 |
--tgttatga----aaatttccaatatctacttgtaatttggcatagctttaactttttgagttgtagatgatggcactgttgtattgtaccatggttga |
54081789 |
T |
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| Q |
432 |
attcagatatata |
444 |
Q |
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| T |
54081790 |
attcagatatata |
54081802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 54081317 - 54081379
Alignment:
| Q |
17 |
agcaggctcatatgcaggctctcgggctggttcgggatccggtggtagaagtcgcggtggtgg |
79 |
Q |
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| T |
54081317 |
agcaggctcatatgcaggctctcgggctggttcgggatcaggtggtagaagtcgcggtggtgg |
54081379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 54084721 - 54084782
Alignment:
| Q |
18 |
gcaggctcatatgcaggctctcgggctggttcgggatccggtggtagaagtcgcggtggtgg |
79 |
Q |
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| T |
54084721 |
gcaggctcatatgcaggctctcgggctggttcgggatcaggtggtagaagtcgcagtggtgg |
54084782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 54081480 - 54081572
Alignment:
| Q |
99 |
ggttatggtgaaggtggtggtgattaattaaggaaaagcatgaattgattgacaaatatatagataatacggttgatttaaataaaagaaaat |
191 |
Q |
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| T |
54081480 |
ggttatggtgaaggtgggggtgattaattcaggaaatgcatgaattgactaatatataaataactaatatggttgacacaaataaaagaaaat |
54081572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 54081423 - 54081460
Alignment:
| Q |
72 |
ggtggtggaggctatgggcagggctctggttatggtga |
109 |
Q |
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| T |
54081423 |
ggtggtggaggctctgggcagggctctggttatggtga |
54081460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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