View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16062_low_10 (Length: 232)
Name: NF16062_low_10
Description: NF16062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16062_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 9085581 - 9085784
Alignment:
| Q |
18 |
aagaataatcataatcatcaatattttgttagctaattactactaataaggaggaatcaag-tatattttgcaaagtatgccactttaaaatgttgacta |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || |
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| T |
9085581 |
aagaataatcataatcatcaatattttgttagctaattactactaataaggaggaatcaaggtatattttgcaaagcatgccactttaaaatgttgaata |
9085680 |
T |
|
| Q |
117 |
gcacataataattttttcgcacaccttttccctctcgaacaaattgtcaagattgaagctttccgatctagaaataagctcaaaagcattcattgacaca |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9085681 |
gcacataataattttttcacacaccttttccctctcaaacaaattgtcaagattgaagctttccgatctagaaataagctcaaaagcattcattgacacc |
9085780 |
T |
|
| Q |
217 |
ggtt |
220 |
Q |
| |
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|||| |
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| T |
9085781 |
ggtt |
9085784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 9076809 - 9077008
Alignment:
| Q |
18 |
aagaataatcataatcatcaatattttgttagctaattactactaataaggaggaatcaagtatattttgcaaagtatgccactttaaaatgttgactag |
117 |
Q |
| |
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||||||||||||| |||| ||||||||||| |||||||||||||| ||||| ||| |||||||||| ||| | || | ||||||||||||||| ||| |
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| T |
9076809 |
aagaataatcatagccatcgatattttgttatctaattactactaaaaagga---atcgagtatattttccaacgcatactactttaaaatgttgaatag |
9076905 |
T |
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| Q |
118 |
cacataataattttttcgcacaccttttccctctcgaacaaattgtcaagattgaagctttccgatctagaaataagctcaaaagcattcattgacacag |
217 |
Q |
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|||||| |||||||||| |||||||||||| |||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
9076906 |
cacatactaattttttcacacaccttttccttctcaaacaaattgccaagattgaagctgtccgatctagaaataagctcaaaagcattcattgacaccg |
9077005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 6416785 - 6416988
Alignment:
| Q |
18 |
aagaataatcataatcatcaatattttgttagctaattactactaataaggaggaatcaag-tatattttgcaaagtatgccactttaaaatgttgacta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || |
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|
| T |
6416785 |
aagaataatcataatcatcaatattttgttagctaattactactaataaggaggaatcaaggtatattttgcaaagcatgccactttaaaatgttgaata |
6416884 |
T |
|
| Q |
117 |
gcacataataattttttcgcacaccttttccctctcgaacaaattgtcaagattgaagctttccgatctagaaataagctcaaaagcattcattgacaca |
216 |
Q |
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|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6416885 |
gcacataataattttttcacacaccttttccctctcaaacaaattgtcaagattgaagctttccgatctagaaataagctcaaaagcattcattgacacc |
6416984 |
T |
|
| Q |
217 |
ggtt |
220 |
Q |
| |
|
|||| |
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|
| T |
6416985 |
ggtt |
6416988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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