View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16062_low_2 (Length: 434)
Name: NF16062_low_2
Description: NF16062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16062_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 6821798 - 6822214
Alignment:
| Q |
1 |
tctatgggttggagaaggattggtgcaagtacagaacgatcagaacacacccgaagagactgcagaaagttacctagaagagttgagagaccgtagcatg |
100 |
Q |
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| T |
6821798 |
tctatgggttggagaaggattggtgcaagtacagaacgatcagaacacacccgaagagactgcagaaagttacctagaagagttgagagaccgtagcatg |
6821897 |
T |
|
| Q |
101 |
attcaagttgtagcactaaagcccaatggcaaaattaagacatgttgtcttccaagtatgctcagagaaattatcttgcaaaacaacagcagaacaaacc |
200 |
Q |
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| T |
6821898 |
attcaagttgtagcactaaagcccaatggcaaaattaagacatgttgtcttccaagtatgctcaaagaaattatcttgcaaaacaatagcagaacaaacc |
6821997 |
T |
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| Q |
201 |
acagtcggtattttggtatgcatttagatcagcggtttgcctataattttgatgatgatggtcttgatgcaaactccgcacaagcattcagaaagaaagg |
300 |
Q |
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| T |
6821998 |
acagtcggtattttggtatgcatttagatcagcggtttgcctataattttgatgatgatggtcttgatgcaaactccgcacaagcattcagaaagaaagg |
6822097 |
T |
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| Q |
301 |
aatccccttgtctgttcttttctttgataagggagagggaagtaaaccaggagaacgtgtcgggaatatcctttcaacaggcattgcaagtgagcagttc |
400 |
Q |
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| T |
6822098 |
aatccccttgtctgttcttttctttgataagggagagggaagtaaaccaggagaacgtgtcgggaatatcctttcaacaggcattgcaagtgagcagttc |
6822197 |
T |
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| Q |
401 |
ctaaagaccagagttct |
417 |
Q |
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| T |
6822198 |
ctaaagaccagagttct |
6822214 |
T |
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Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 47 - 417
Target Start/End: Original strand, 7334144 - 7334514
Alignment:
| Q |
47 |
acacccgaagagactgcagaaagttacctagaagagttgagagaccgtagcatgattcaagttgtagcactaaagcccaatggcaaaattaagacatgtt |
146 |
Q |
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||||| ||||| |||||||| ||||| ||||||||||||| |||| | | |||||||||||| || ||||||||| ||||| || ||||||||||| |
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| T |
7334144 |
acacctgaagacactgcagagagttatctagaagagttgatagacagcaacatgattcaagtagtggcactaaagggaaatggaaagattaagacatgcc |
7334243 |
T |
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| Q |
147 |
gtcttccaagtatgctcagagaaattatcttgcaaaacaacagcagaacaaaccacagtcggtattttggtatgcatttagatcagcggtttgcctataa |
246 |
Q |
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| || || ||||||||||||||||| ||||||||||| |||| |||||||| ||| |||||||| | |||| |||||||| | ||| || ||||| | |
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| T |
7334244 |
gcctgccgagtatgctcagagaaatcatcttgcaaaataacaacagaacaagccaaagtcggtactggggtacacatttagagcggcgaatttcctatca |
7334343 |
T |
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| Q |
247 |
ttttgatgatgatggtcttgatgcaaactccgcacaagcattcagaaagaaaggaatccccttgtctgttcttttctttgataagggagagggaagtaaa |
346 |
Q |
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|||| | ||| |||| ||| ||| |||||| || ||||| ||||| |||||||||| ||| ||||||||||||||||||| ||| |||||||| ||||| |
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| T |
7334344 |
tttttacgatcatggccttaatgaaaactcggcccaagctttcagcaagaaaggaactcccctgtctgttcttttctttgacaagcgagagggatgtaaa |
7334443 |
T |
|
| Q |
347 |
ccaggagaacgtgtcgggaatatcctttcaacaggcattgcaagtgagcagttcctaaagaccagagttct |
417 |
Q |
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| T |
7334444 |
ccaggagaacatgtaggtaagatcctttcaacgagcattgcagatcagcagttcctagagaccagagttct |
7334514 |
T |
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