View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16062_low_3 (Length: 403)
Name: NF16062_low_3
Description: NF16062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16062_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 34925497 - 34925122
Alignment:
| Q |
18 |
aaagccgctgaacttcgaaatcagagagctgaaattcgtaagcagaaagctgaagctattgaaattcataagcgcgaagcacaagttgctgaaggtaaca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
34925497 |
aaagccgctgaacttcgaaatcagagagctgaaattcgtaagcagaaagctgaagctattgaaattcgtaagcgcgaagctgaagttgctgaaggtaaca |
34925398 |
T |
|
| Q |
118 |
tcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggacatccaaaatttatatgttagacttcttataaagaatatttataggagta |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925397 |
tcaaaagtaagcggcagaagaagcaagtgttggaggcttaagatgaaggacatccaaaatttatatgttagacttcttataaagaatatttataggagta |
34925298 |
T |
|
| Q |
218 |
ggcgcttacataaatcattctaaatgctgtaactaaaattaaactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataacc |
317 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925297 |
ggtgcttacataaatcattctaaatgctgtaactaaaattaaactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataacc |
34925198 |
T |
|
| Q |
318 |
aagctctcaaatcttggtctatgtgtgtcttgttattctgtactatttcctatataacttctgcaatttgcctatg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34925197 |
aagctctcaaatcttggtctatgtgtgtcttgttattctgtactatttcctatataacttctgcaatttgtctatg |
34925122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 34935398 - 34935027
Alignment:
| Q |
19 |
aagccgctgaacttcgaaatcagagagctgaaattcgtaagcagaaagctgaagctattgaaattcataagcgcgaagcacaagttgctgaaggtaacat |
118 |
Q |
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|||||| |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
34935398 |
aagccgttgaacttcgaaagcagagagctgaagctcgtaagcagaaagctgaagctgttgaaattcgtaagcgtgaagctgaagttgctgaaggtaacat |
34935299 |
T |
|
| Q |
119 |
caaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggacatccaaaatttatatgttagacttcttataaagaatatttataggagtag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
34935298 |
caaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggacatccaaaatctatatgttagacttcttatatagaatatttataggagtag |
34935199 |
T |
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| Q |
219 |
gcgcttacataaatcattctaaatgctgtaactaaaattaaactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataacca |
318 |
Q |
| |
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| ||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||| | |||||| ||| ||||||||||||||||| || || || |
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| T |
34935198 |
gtgcttaaataaatcattctcaatgctgtgactaaaattaaacta---ttagttttatcctaaagttgcgagcattagacacttgggagggagagaatca |
34935102 |
T |
|
| Q |
319 |
agctctcaaatcttggtctatgtgtgtcttgttattctgtactatttcctatataacttctgcaatttgcctatg |
393 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||||| |
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| T |
34935101 |
agctctcgaatcttggtctatgtgtgtcttgttattctgtactatctcctatatgactactgcaatttgtctatg |
34935027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 34929859 - 34929487
Alignment:
| Q |
18 |
aaagccgctgaacttcgaaatcagagagctgaaattcgtaagcagaaagctgaagctattgaaattcataagcgcgaagcacaagttgctgaaggtaaca |
117 |
Q |
| |
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||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||| ||||||||| |||||| ||||| |||||||||||||||||| |
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| T |
34929859 |
aaagctgctgaacttcgaaagcagagagctgaagctcgtaagcagaaagccgaagctgttgaaattcgtaagcgtgaagctgaagttgctgaaggtaaca |
34929760 |
T |
|
| Q |
118 |
tcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggacatccaaaatttatatgttagacttcttataaagaatatttataggagta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |
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| T |
34929759 |
tcaaaagtaagcggcagaagaagtaagtgctggaggcttaagatgaaggacatccaaaatctatatgtttgacttcttatatagaatatttataggagta |
34929660 |
T |
|
| Q |
218 |
ggcgcttacataaatcattctaaatgctgtaactaaaattaaactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataacc |
317 |
Q |
| |
|
|| ||||| |||||||||||| ||| |||| ||||||||||||||| ||||||||||| | |||||| ||| ||||||||||||||||| || || | |
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| T |
34929659 |
ggtgcttaaataaatcattctcaattctgtgactaaaattaaacta---ttagttttatcctaaagttgcgagcattagacacttgggagggagagaatc |
34929563 |
T |
|
| Q |
318 |
aagctctcaaatcttggtctatgtgtgtcttgttattctgtactatttcctatataacttctgcaatttgcctatg |
393 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |
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| T |
34929562 |
aagctctcgaatcttggtctatgtgtgtcttgttattctgtactatttcctatatgactactgcaatttgtctatg |
34929487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 34928743 - 34928592
Alignment:
| Q |
18 |
aaagccgctgaacttcgaaatcagagagctgaaattcgtaagcagaaagctgaagctattgaaattcataagcgcgaagcacaagttgctgaaggtaaca |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||| ||||| ||||||| | || |
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| T |
34928743 |
aaagccgctgaacttcgaaagcagagagctgaagttcgtaagcagaaagctgaagctgttgaaattcgtaagcacgaagctgaagtttctgaaggcatca |
34928644 |
T |
|
| Q |
118 |
tcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggaca |
169 |
Q |
| |
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||| ||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
34928643 |
tcagaagtaagcggcagaagaagcacgtgttggaggcttaagatgaaggaca |
34928592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 376
Target Start/End: Original strand, 32683559 - 32683670
Alignment:
| Q |
259 |
aactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgt |
358 |
Q |
| |
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||||||||| |||||||| | ||||||||||| |||||||||||||| | || |||||||| ||||||||| |||||| |||||| |||||| ||| |
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| T |
32683559 |
aactatgttctgttttatccttaagttgtgagttttagacacttgggaag-tg----ccaagctcgcaaatcttg-tctatgcgtgtctggttattatgt |
32683652 |
T |
|
| Q |
359 |
actatttcctatataact |
376 |
Q |
| |
|
||| ||||||||||||| |
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| T |
32683653 |
actgattcctatataact |
32683670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 376
Target Start/End: Original strand, 32685269 - 32685380
Alignment:
| Q |
259 |
aactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgt |
358 |
Q |
| |
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||||||||| |||||||| | ||||||||||| |||||||||||||| | || |||||||| ||||||||| |||||| |||||| |||||| ||| |
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| T |
32685269 |
aactatgttctgttttatccttaagttgtgagttttagacacttgggaag-tg----ccaagctcgcaaatcttg-tctatgcgtgtctggttattatgt |
32685362 |
T |
|
| Q |
359 |
actatttcctatataact |
376 |
Q |
| |
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||| ||||||||||||| |
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|
| T |
32685363 |
actgattcctatataact |
32685380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 28699345 - 28699374
Alignment:
| Q |
344 |
gtcttgttattctgtactatttcctatata |
373 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
28699345 |
gtcttgttattctgtactatttcctatata |
28699374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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