View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16062_low_5 (Length: 320)
Name: NF16062_low_5
Description: NF16062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16062_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 7297929 - 7298224
Alignment:
| Q |
18 |
accaggaaccccaaaaaagtagcaagaactcattttagttttgatttcatcttgcagtttctctttaaagttgtcaagtgacttaaatatgttgttgaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7297929 |
accaggaaccccaaaaaagtagcaagaactcattttagttttgatttcatcttgcagtttctctttaaagttgtcaagtgacttaaatatgttgttgaag |
7298028 |
T |
|
| Q |
118 |
tcatttccagaaacatcattaaaaaatatcttgtactcgggagatgaatggttcaattgttggcaaagcttctccacaaccatgataatatctgatacca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7298029 |
tcatttccagaaacatcattaaaaaatatcttgtactcgggagatgaatggttcaattgttggcaaagcttctccacaaccatgataatatctgatacca |
7298128 |
T |
|
| Q |
218 |
caaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtgttttggagtagaggcttgttatggcttcatctc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7298129 |
caaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtgttttggagtagaggcttgttatggcttcatctc |
7298224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 7293455 - 7293750
Alignment:
| Q |
18 |
accaggaaccccaaaaaagtagcaagaactcattttagttttgatttcatcttgcagtttctctttaaagttgtcaagtgacttaaatatgttgttgaag |
117 |
Q |
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||||||||| ||||| |||||||||| ||||||| ||||||||||||||| | ||||| | ||||||| | |||||||||||||| |||||||||||| |
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| T |
7293455 |
accaggaacaccaaagaagtagcaagggctcatttcagttttgatttcatcaagtagtttatgtttaaagctatcaagtgacttaaaaatgttgttgaag |
7293554 |
T |
|
| Q |
118 |
tcatttccagaaacatcattaaaaaatatcttgtactcgggagatgaatggttcaattgttggcaaagcttctccacaaccatgataatatctgatacca |
217 |
Q |
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||||| || |||| ||| |||||||| |||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| || ||||| |||| |
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| T |
7293555 |
tcattccctgaaagatcgttaaaaaagatcttgtattcgggagatgcatatttcaattgttggcaaagcttctccacaaccatgatgatttctgacacca |
7293654 |
T |
|
| Q |
218 |
caaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtgttttggagtagaggcttgttatggcttcatctc |
313 |
Q |
| |
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|| ||||||||||| ||||| |||||||||| | ||||||||||||||||||| || |||||| ||||||||||||| ||||||||||| |||| |
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| T |
7293655 |
cagacaaagtgttttgtccacaagaacaacccagatctgcaattgcaaggcttctgggaagtgtgctggagtagaggctagttatggcttcctctc |
7293750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 89 - 313
Target Start/End: Original strand, 32627841 - 32628065
Alignment:
| Q |
89 |
tgtcaagtgacttaaatatgttgttgaagtcatttccagaaacatcattaaaaaatatcttgtactcgggagatgaatggttcaattgttggcaaagctt |
188 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||||||| | | ||| || ||| ||||| | || ||||||||| ||| || | || | | |||||||| |
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|
| T |
32627841 |
tgtcaagggacgtaaatatggtgttgaagtcatttcccggtagatcgttcaaatatatcatatattcgggagatttatgattaagttttcgacaaagctt |
32627940 |
T |
|
| Q |
189 |
ctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtgttttggag |
288 |
Q |
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|||||||| ||||||||||| | | ||| ||||||||||||| ||||||||| |||||||| |||||||||| | ||||||| | ||||| ||| | |
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| T |
32627941 |
ttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaattgtcaagcttttggagagtgtgttgttg |
32628040 |
T |
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| Q |
289 |
tagaggcttgttatggcttcatctc |
313 |
Q |
| |
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|| | ||| |||||||||||||||| |
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| T |
32628041 |
tacatgctggttatggcttcatctc |
32628065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 32709837 - 32709953
Alignment:
| Q |
147 |
cttgtactcgggagatgaatggttcaattgttggcaaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaa |
246 |
Q |
| |
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|||||| ||||||||| ||| ||||| | | | |||||||| ||||| ||| |||||| ||||||||||| |||||||||||||| |||||||| ||| |
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| T |
32709837 |
cttgtattcgggagattcatgattcaactctcgacaaagcttttccacgaccttgataaattctgataccaccaacaaagtgtttggcccagaagagcaa |
32709936 |
T |
|
| Q |
247 |
cctaaatctgcaattgc |
263 |
Q |
| |
|
|| || ||||||||||| |
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| T |
32709937 |
cccaagtctgcaattgc |
32709953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 32704161 - 32704243
Alignment:
| Q |
181 |
caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgc |
263 |
Q |
| |
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|||| ||| ||||||||| ||||| ||||||| | | | |||||||||||||||||| |||| ||||| |||||||||||||| |
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| T |
32704161 |
caaatcttttccacaaccttgatagtatctgagatcgccaacaaagtgtttggtccataagagcaacccaaatctgcaattgc |
32704243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 20115878 - 20115800
Alignment:
| Q |
181 |
caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaa |
259 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||| | ||| ||||| ||||||||||| ||||| |||||||| ||||||| |
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| T |
20115878 |
caaagcttttccacaaccttgataatttctgagatcaccaacaaggtgtttggtcctgaagagcaacctaagtctgcaa |
20115800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 259
Target Start/End: Original strand, 21943673 - 21943859
Alignment:
| Q |
73 |
agtttctctttaaagttgtcaagtgacttaaatatgttgttgaagtcatttccagaaacatcattaaaaaatatcttgtactcgggagatgaatggttca |
172 |
Q |
| |
|
||||| ||||| ||| | ||||| ||| |||||| ||||||||| || ||||| | | ||| || ||||||| ||| || ||||||||| ||| |||| |
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| T |
21943673 |
agtttttctttgaaggtctcaagggacctaaatacgttgttgaaatcgtttccgggtagatcgttcaaaaataccttatattcgggagattcatgattca |
21943772 |
T |
|
| Q |
173 |
attgttggcaaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaa |
259 |
Q |
| |
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| | ||| |||||||| |||||||| | ||||| || || | ||| |||||||| ||| |||||||||||||||| || ||||||| |
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| T |
21943773 |
actcttgacaaagcttttccacaacatttataatctccgagatcaccaacaaagtatttagtccagaagaacaacccaagtctgcaa |
21943859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 5811416 - 5811660
Alignment:
| Q |
19 |
ccaggaaccccaaaaaagtagcaagaactcattttagttttgatttcatcttgcagtttctctttaaagttgtcaagtgacttaaatatgttgttgaagt |
118 |
Q |
| |
|
|||||||| ||| | |||||||||| || ||||| ||||| ||||||| | ||||| ||||| ||| ||||||| ||| |||||| || |||||| | |
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| T |
5811416 |
ccaggaacaccagagaagtagcaaggacccatttcagtttccatttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaat |
5811515 |
T |
|
| Q |
119 |
catttccagaaacatcattaaaaaatatcttgtactcgggagatgaatggttcaattgttggcaaagcttctccacaaccatgataatatctgataccac |
218 |
Q |
| |
|
||||||| | | ||| || ||||| | || || ||||||||| ||| || | || | | |||||||| || |||||| ||||||| || || | ||| |
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|
| T |
5811516 |
catttcccggtagatcgttcaaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcac |
5811615 |
T |
|
| Q |
219 |
aaacaaagtgtttggtccagaagaacaacctaaatctgcaattgc |
263 |
Q |
| |
|
|| ||||||||||||||| |||| ||||| || ||||||||||| |
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|
| T |
5811616 |
caagaaagtgtttggtccaaaagagcaacccaagtctgcaattgc |
5811660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 27736765 - 27736841
Alignment:
| Q |
49 |
attttagttttgatttcatcttgcagtttctctttaaagttgtcaagtgacttaaatatgttgttgaagtcatttcc |
125 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||| ||| ||||||| ||||| |||| |||||||||||||||||| |
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|
| T |
27736765 |
attttagtttccatttcatcacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcc |
27736841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 8029021 - 8028972
Alignment:
| Q |
211 |
gataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaat |
260 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||||||| ||||||||||| |
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| T |
8029021 |
gatatcaccaacaaagtgtttggcccagaagaacaacccaaatctgcaat |
8028972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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