View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16063_high_5 (Length: 414)
Name: NF16063_high_5
Description: NF16063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16063_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 32449185 - 32448963
Alignment:
| Q |
12 |
aagaacaggaataatacaaggaataatcgtgtaactgattgtgactgtttttgttgaaagctgacgcataccattgtcctcttcctatcaaactcaaggc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32449185 |
aagaacaggaataatacaaggaataatcgtgtaactgattgtgattgtttttgttgaaagctgacgcataccattgtcctcttactatcaaactcaaggc |
32449086 |
T |
|
| Q |
112 |
tttcaatagccacgaaccaataataagtaacataagataaataaattatggactatgcttttatacatcaaatcatgcattgatgtcttaaataaagaag |
211 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32449085 |
at-caatagccacgaaccaataataagtaacataagataaataaattatggactatgcttttatacatcaaatcatgcattgatgtcttaaataaagaag |
32448987 |
T |
|
| Q |
212 |
actattttatccgtctcaaaatca |
235 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
32448986 |
actattttatccgtctcaaaatca |
32448963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 303 - 398
Target Start/End: Complemental strand, 32448143 - 32448048
Alignment:
| Q |
303 |
aagggcaaactattaggactcccattttataaaatatcttaatagaattcactatcttgattgtttcattatgctctaatgtgtattcatacaatg |
398 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||| |||||| | ||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
32448143 |
aagggcaaactattaggactcccattttttaaaatatcttcataaaattcattctcttgattgtttcattatgctctaatgtgtactaatacaatg |
32448048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 8179730 - 8179787
Alignment:
| Q |
341 |
ttaatagaattcactatcttgattgtttcattatgctctaatgtgtattcatacaatg |
398 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
8179730 |
ttaatagaattcattctcttgattgttttattatgctctaatgtgtatttatacaatg |
8179787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 8180316 - 8180357
Alignment:
| Q |
357 |
tcttgattgtttcattatgctctaatgtgtattcatacaatg |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8180316 |
tcttgattgtttcattatgctctaatgtgtatttatacaatg |
8180357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 52053698 - 52053755
Alignment:
| Q |
341 |
ttaatagaattcactatcttgattgtttcattatgctctaatgtgtattcatacaatg |
398 |
Q |
| |
|
||||||||||||| | || ||| |||||||||||||||| ||||||||| |||||||| |
|
|
| T |
52053698 |
ttaatagaattcattctcatgaatgtttcattatgctctgatgtgtatttatacaatg |
52053755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 398
Target Start/End: Complemental strand, 4125662 - 4125606
Alignment:
| Q |
342 |
taatagaattcactatcttgattgtttcattatgctctaatgtgtattcatacaatg |
398 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||| || ||||||||||| |||||||| |
|
|
| T |
4125662 |
taatagaattcattgtcttgagtgtttcattatactttaatgtgtatttatacaatg |
4125606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 44936006 - 44936058
Alignment:
| Q |
342 |
taatagaattcactatcttgattgtttcattatgctctaatgtgtattcatac |
394 |
Q |
| |
|
|||||||||||| | || ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
44936006 |
taatagaattcattctcatgagtgtttcattatgctctaatgtgtatttatac |
44936058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 5961206 - 5961262
Alignment:
| Q |
342 |
taatagaattcactatcttgattgtttcattatgctctaatgtgtattcatacaatg |
398 |
Q |
| |
|
|||||||||||| | || ||| |||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
5961206 |
taatagaattcattctcgtgagtgtttcattatgttctaatgtgtatttatataatg |
5961262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 23680683 - 23680635
Alignment:
| Q |
341 |
ttaatagaattcactatcttgattgtttcattatgctctaatgtgtatt |
389 |
Q |
| |
|
||||||||||||| | | ||| |||||||||||||||||||||||||| |
|
|
| T |
23680683 |
ttaatagaattcattcttgtgagtgtttcattatgctctaatgtgtatt |
23680635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University