View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16063_low_1 (Length: 671)

Name: NF16063_low_1
Description: NF16063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16063_low_1
NF16063_low_1
[»] chr7 (1 HSPs)
chr7 (13-658)||(47124996-47125636)


Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 13 - 658
Target Start/End: Original strand, 47124996 - 47125636
Alignment:
Q  13 caaaggtgtgagcctaaaaaagtgaactcttgttcaatgtggtcttccttaatgannnnnnnnnnnnnnnnnnnnnnnagcacatttgctttaaagatct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                       ||||||||||||||||||||||    
T  47124996 caaaggtgtgagcctaaaaaagtgaactcttgttcaatgtggtcttccttaatgatttattttttctttacttcttttagcacatttgctttaaagatct 47125095  T
Q  113 ttaaagatcaatgccataatttttacctatattcattgtcatgggattttcttgtttctcaacccctcgtagggaaagttttcaagtgtaatatattcct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47125096 ttaaagatcaatgccataatttttacctatattcattgtcatgggattttctcgtttctcaacccctcgtagggaaagttttcaagtgtaatatattcct 47125195  T
Q  213 tagctaccgctaaaatatgtaagacatgcatgagaggttcaaacaacacagtgatcttcaattgaaaatgaagttgttaagttgtaaaaggtttgtttta 312  Q
    |||||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47125196 tagctaccgctaaaatatgtaagacatgtatgagaggttcaaa-------gtgatcttcaattgaaaatgaagttgttaagttgtaaaaggtttgtttta 47125288  T
Q  313 gtgtaaactgcatttcacaaaatcaaaatccttc--aaaaagaagttatttgctattagattatgtgtctcgtgttttaggtgagactttctagtcttaa 410  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47125289 gtgtaaactgcatttcacaaaatcaaaatcctttcaaaaaagaagttatttgctattagattatgtgtctcgtgttttaggtgagactttctagtcttaa 47125388  T
Q  411 tgatacatgacactacacttggtgctcctcgtctaaatttatttggttaaaaccctccaacggtcagaatcctttacggatagtgttttccaaatagtca 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47125389 tgatacatgacactacacttggtgctcctcgtctaaatttatttggttaaaaccctccaacggtcagaatcctttacggatagtgttttccaaatagtca 47125488  T
Q  511 atcctctctagtaaataatcaatattatgagcataagcccaaagagaaaggccaatttaaaagattttcctattaggttagagacctatttagctaatac 610  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47125489 atcctctctagtaaataatcaatgttatgagcataagcccaaagagaaaggccaatttaaaagattttcctattaggttagagacctatttagctaatac 47125588  T
Q  611 ttctcaatgtgagactcctaagtctaacatcaggtctcaagatcttgc 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47125589 ttctcaatgtgagactcctaagtctaacatcaggtctcaagatcttgc 47125636  T

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