View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16063_low_10 (Length: 281)

Name: NF16063_low_10
Description: NF16063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16063_low_10
NF16063_low_10
[»] chr5 (8 HSPs)
chr5 (182-265)||(13256125-13256208)
chr5 (71-151)||(13256239-13256319)
chr5 (39-71)||(21784345-21784377)
chr5 (39-74)||(16957401-16957436)
chr5 (39-74)||(25622547-25622582)
chr5 (39-74)||(38879670-38879705)
chr5 (39-71)||(13774955-13774987)
chr5 (34-74)||(43574693-43574733)
[»] chr8 (7 HSPs)
chr8 (39-75)||(18164773-18164809)
chr8 (39-74)||(20284082-20284117)
chr8 (39-74)||(21070710-21070745)
chr8 (39-74)||(27468105-27468140)
chr8 (39-74)||(39461007-39461042)
chr8 (39-73)||(12625978-12626012)
chr8 (40-74)||(28817640-28817674)
[»] chr3 (4 HSPs)
chr3 (39-75)||(47624207-47624243)
chr3 (39-74)||(13628803-13628838)
chr3 (39-74)||(40272825-40272860)
chr3 (39-74)||(54484800-54484835)
[»] chr2 (8 HSPs)
chr2 (39-75)||(124927-124963)
chr2 (39-75)||(22371198-22371234)
chr2 (39-74)||(9671266-9671301)
chr2 (39-74)||(10543787-10543822)
chr2 (39-74)||(10546250-10546285)
chr2 (39-74)||(14444815-14444850)
chr2 (39-74)||(14530407-14530442)
chr2 (40-74)||(34766342-34766376)
[»] scaffold0311 (1 HSPs)
scaffold0311 (39-74)||(10897-10932)
[»] scaffold0057 (1 HSPs)
scaffold0057 (39-74)||(46918-46953)
[»] chr7 (2 HSPs)
chr7 (39-74)||(42495875-42495910)
chr7 (39-74)||(45018936-45018971)
[»] chr6 (1 HSPs)
chr6 (39-74)||(29355868-29355903)
[»] chr4 (12 HSPs)
chr4 (39-74)||(20639671-20639706)
chr4 (39-74)||(30690189-30690224)
chr4 (39-74)||(35532079-35532114)
chr4 (39-74)||(38755921-38755956)
chr4 (39-74)||(40553950-40553985)
chr4 (39-74)||(44363143-44363178)
chr4 (39-74)||(54730339-54730374)
chr4 (40-74)||(33836501-33836535)
chr4 (39-71)||(11394942-11394974)
chr4 (39-71)||(11404669-11404701)
chr4 (42-74)||(14983921-14983953)
chr4 (38-74)||(20908648-20908684)
[»] chr1 (4 HSPs)
chr1 (39-74)||(4349748-4349783)
chr1 (39-74)||(19701681-19701716)
chr1 (39-74)||(27474390-27474425)
chr1 (42-74)||(46247969-46248001)


Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 13256208 - 13256125
Alignment:
Q  182 tgttaggtggatatgcagcaggatactatagctacaaggtataatttatattggtttgataattatggacattttgtttcatat 265  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  13256208 tgttaggtggatatgcagctggatactatagctacaaggtatattttgtattgctttgataattatggacattttgtttcatat 13256125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 13256319 - 13256239
Alignment:
Q  71 ggaaacaaccaatatataagaacaatattttccttaaaaaccaacaattagagtatgcaattattatctttgatgtaactc 151  Q
    |||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  13256319 ggaaacgaccaatatataagaacgatattttccttaaaaaccgacaattagagtatgcaattattatctatgatgaaactc 13256239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 21784345 - 21784377
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgg 71  Q
    |||||||||||||||||||||||||||||||||    
T  21784345 gtgcactaaacctcccgcatacgcagggtccgg 21784377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 16957436 - 16957401
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  16957436 gtgcactaaagctcccgcatacgcagggtccgggaa 16957401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 25622582 - 25622547
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  25622582 gtgcactaaagctcccgcatacgcagggtccgggaa 25622547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 38879705 - 38879670
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  38879705 gtgcactaaagctcccgcatacgcagggtccgggaa 38879670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 13774987 - 13774955
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgg 71  Q
    |||||||||| ||||||||||||||||||||||    
T  13774987 gtgcactaaagctcccgcatacgcagggtccgg 13774955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 43574733 - 43574693
Alignment:
Q  34 tccctgtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||| |||| ||||| |||||||||||||||||||||||||    
T  43574733 tcccggtgctctaaagctcccgcatacgcagggtccgggaa 43574693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 18164773 - 18164809
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaaa 75  Q
    |||||||||| ||||||||||||||||||||||||||    
T  18164773 gtgcactaaagctcccgcatacgcagggtccgggaaa 18164809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 20284082 - 20284117
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  20284082 gtgcactaaaactcccgcatacgcagggtccgggaa 20284117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 21070710 - 21070745
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  21070710 gtgcactaaaactcccgcatacgcagggtccgggaa 21070745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 27468105 - 27468140
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  27468105 gtgcactaaagctcccgcatacgcagggtccgggaa 27468140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 39461007 - 39461042
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  39461007 gtgcactaaagctcccgcatacgcagggtccgggaa 39461042  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 12626012 - 12625978
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccggga 73  Q
    |||||||||| ||||||||||||||||||||||||    
T  12626012 gtgcactaaagctcccgcatacgcagggtccggga 12625978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 28817640 - 28817674
Alignment:
Q  40 tgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    ||||||||| |||||||||||||||||||||||||    
T  28817640 tgcactaaagctcccgcatacgcagggtccgggaa 28817674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 47624243 - 47624207
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaaa 75  Q
    |||||||||| ||||||||||||||||||||||||||    
T  47624243 gtgcactaaagctcccgcatacgcagggtccgggaaa 47624207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 13628803 - 13628838
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  13628803 gtgcactaaagctcccgcatacgcagggtccgggaa 13628838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 40272825 - 40272860
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  40272825 gtgcactaaagctcccgcatacgcagggtccgggaa 40272860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 54484835 - 54484800
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  54484835 gtgcactaaagctcccgcatacgcagggtccgggaa 54484800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 124927 - 124963
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaaa 75  Q
    |||||||||| ||||||||||||||||||||||||||    
T  124927 gtgcactaaagctcccgcatacgcagggtccgggaaa 124963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 22371234 - 22371198
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaaa 75  Q
    |||||||||| ||||||||||||||||||||||||||    
T  22371234 gtgcactaaagctcccgcatacgcagggtccgggaaa 22371198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 9671301 - 9671266
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  9671301 gtgcactaaagctcccgcatacgcagggtccgggaa 9671266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 10543822 - 10543787
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  10543822 gtgcactaaagctcccgcatacgcagggtccgggaa 10543787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 10546285 - 10546250
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  10546285 gtgcactaaagctcccgcatacgcagggtccgggaa 10546250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 14444850 - 14444815
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  14444850 gtgcactaaagctcccgcatacgcagggtccgggaa 14444815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 14530442 - 14530407
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  14530442 gtgcactaaagctcccgcatacgcagggtccgggaa 14530407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 34766376 - 34766342
Alignment:
Q  40 tgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    ||||||||| |||||||||||||||||||||||||    
T  34766376 tgcactaaagctcccgcatacgcagggtccgggaa 34766342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 10932 - 10897
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  10932 gtgcactaaagctcccgcatacgcagggtccgggaa 10897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 46953 - 46918
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  46953 gtgcactaaagctcccgcatacgcagggtccgggaa 46918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 42495875 - 42495910
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  42495875 gtgcactaaagctcccgcatacgcagggtccgggaa 42495910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 45018936 - 45018971
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  45018936 gtgcactaaagctcccgcatacgcagggtccgggaa 45018971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 29355868 - 29355903
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  29355868 gtgcactaaagctcccgcatacgcagggtccgggaa 29355903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 20639671 - 20639706
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  20639671 gtgcactaaagctcccgcatacgcagggtccgggaa 20639706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 30690189 - 30690224
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  30690189 gtgcactaaagctcccgcatacgcagggtccgggaa 30690224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 35532114 - 35532079
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  35532114 gtgcactaaagctcccgcatacgcagggtccgggaa 35532079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 38755921 - 38755956
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  38755921 gtgcactaaagctcccgcatacgcagggtccgggaa 38755956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 40553950 - 40553985
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  40553950 gtgcactaaagctcccgcatacgcagggtccgggaa 40553985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 44363143 - 44363178
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  44363143 gtgcactaaagctcccgcatacgcagggtccgggaa 44363178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 54730374 - 54730339
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  54730374 gtgcactaaagctcccgcatacgcagggtccgggaa 54730339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 33836501 - 33836535
Alignment:
Q  40 tgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    ||||||||| |||||||||||||||||||||||||    
T  33836501 tgcactaaagctcccgcatacgcagggtccgggaa 33836535  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 11394974 - 11394942
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgg 71  Q
    |||||||||| ||||||||||||||||||||||    
T  11394974 gtgcactaaagctcccgcatacgcagggtccgg 11394942  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 11404701 - 11404669
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgg 71  Q
    |||||||||| ||||||||||||||||||||||    
T  11404701 gtgcactaaagctcccgcatacgcagggtccgg 11404669  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 14983953 - 14983921
Alignment:
Q  42 cactaaacctcccgcatacgcagggtccgggaa 74  Q
    ||||||| |||||||||||||||||||||||||    
T  14983953 cactaaagctcccgcatacgcagggtccgggaa 14983921  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 20908648 - 20908684
Alignment:
Q  38 tgtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  20908648 tgtgcactaaagctcccgcatacgcagggttcgggaa 20908684  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 4349783 - 4349748
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  4349783 gtgcactaaagctcccgcatacgcagggtccgggaa 4349748  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 19701716 - 19701681
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  19701716 gtgcactaaagctcccgcatacgcagggtccgggaa 19701681  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 27474425 - 27474390
Alignment:
Q  39 gtgcactaaacctcccgcatacgcagggtccgggaa 74  Q
    |||||||||| |||||||||||||||||||||||||    
T  27474425 gtgcactaaagctcccgcatacgcagggtccgggaa 27474390  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 46247969 - 46248001
Alignment:
Q  42 cactaaacctcccgcatacgcagggtccgggaa 74  Q
    ||||||| |||||||||||||||||||||||||    
T  46247969 cactaaagctcccgcatacgcagggtccgggaa 46248001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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