View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16063_low_2 (Length: 632)
Name: NF16063_low_2
Description: NF16063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16063_low_2 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 121 - 612
Target Start/End: Complemental strand, 31320739 - 31320245
Alignment:
| Q |
121 |
tattacctttgagatctgattttgattctggaaagtatccccatgtcattagtacaggatggagatgaagattcctaccaatgtttttgttctt---taa |
217 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||| ||| |
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| T |
31320739 |
tattacctttgaaatctgattttgattctggaaagtatccccatgtcattagcacaggatgaagatgaaggtttctaccaatgtttttattcttagttaa |
31320640 |
T |
|
| Q |
218 |
accactagagatcaataatggtggtgtaagaattgccccacctgcagaaattgtcactttggcctcaatctgtagcttcattgtgactctactgtttaaa |
317 |
Q |
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||||||||| |||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| || |||| || |||||||||||||||| || |||||| |
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| T |
31320639 |
accactagaaatcatcaatggaggtgttagaagtgctccacctgctgaaattgttacttttgcttcaaattgcagcttcattgtgactccgctatttaaa |
31320540 |
T |
|
| Q |
318 |
gtcttggccaacactcccaaacatttcttcttctttctggtattggtattcttataattattatcaaacaagaatctctcagctttgcatcctgttatta |
417 |
Q |
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||||| ||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| | |
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| T |
31320539 |
gtcttcgccaaaactcccaaacatttcttattctttctggtattggcattcctataattattttcaaacaagaatctctcagctttacatcctgttataa |
31320440 |
T |
|
| Q |
418 |
tcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttctcaccttttggacaaccataaccacatgaaccacaataatgatt |
517 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
31320439 |
tcacagcacctttatcaacagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgatt |
31320340 |
T |
|
| Q |
518 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattttggaatccttcttgtgtacaat |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320339 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattttggaatccttcttgtgtacaat |
31320245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 121 - 612
Target Start/End: Complemental strand, 31332992 - 31332498
Alignment:
| Q |
121 |
tattacctttgagatctgattttgattctggaaagtatccccatgtcattagtacaggatggagatgaagattcctaccaatgtttttgttctt---taa |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||| ||| |
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| T |
31332992 |
tattacctttgaaatctgattttgattctggaaagtatccccatgtcattagcacaggatgaagatgaaggtttctaccaatgtttttattcttagttaa |
31332893 |
T |
|
| Q |
218 |
accactagagatcaataatggtggtgtaagaattgccccacctgcagaaattgtcactttggcctcaatctgtagcttcattgtgactctactgtttaaa |
317 |
Q |
| |
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||||||||| |||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| || |||| || |||||||||||||||| || |||||| |
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| T |
31332892 |
accactagaaatcatcaatggaggtgttagaagtgctccacctgctgaaattgttacttttgcttcaaattgcagcttcattgtgactccgctatttaaa |
31332793 |
T |
|
| Q |
318 |
gtcttggccaacactcccaaacatttcttcttctttctggtattggtattcttataattattatcaaacaagaatctctcagctttgcatcctgttatta |
417 |
Q |
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||||| ||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| | |
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| T |
31332792 |
gtcttcgccaaaactcccaaacatttcttattctttctggtattggcattcctataattattttcaaacaagaatctctcagctttacatcctgttataa |
31332693 |
T |
|
| Q |
418 |
tcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttctcaccttttggacaaccataaccacatgaaccacaataatgatt |
517 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
31332692 |
tcacagcacctttatcaacagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgatt |
31332593 |
T |
|
| Q |
518 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattttggaatccttcttgtgtacaat |
612 |
Q |
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| T |
31332592 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttgacacccttttcttaatacttgattttggaatccttcttgtgtacaat |
31332498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 121 - 612
Target Start/End: Original strand, 2931 - 3425
Alignment:
| Q |
121 |
tattacctttgagatctgattttgattctggaaagtatccccatgtcattagtacaggatggagatgaagattcctaccaatgtttttgttctt---taa |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||| ||| |
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| T |
2931 |
tattacctttgaaatctgattttgattctggaaagtatccccatgtcattagcacaggatgaagatgaaggtttctaccaatgtttttattcttagttaa |
3030 |
T |
|
| Q |
218 |
accactagagatcaataatggtggtgtaagaattgccccacctgcagaaattgtcactttggcctcaatctgtagcttcattgtgactctactgtttaaa |
317 |
Q |
| |
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||||||||| |||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| || |||| || |||||||||||||||| || |||||| |
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| T |
3031 |
accactagaaatcatcaatggaggtgttagaagtgctccacctgctgaaattgttacttttgcttcaaattgcagcttcattgtgactccgctatttaaa |
3130 |
T |
|
| Q |
318 |
gtcttggccaacactcccaaacatttcttcttctttctggtattggtattcttataattattatcaaacaagaatctctcagctttgcatcctgttatta |
417 |
Q |
| |
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||||| ||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| | |
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|
| T |
3131 |
gtcttcgccaaaactcccaaacatttcttattctttctggtattggcattcctataattattttcaaacaagaatctctcagctttacatcctgttataa |
3230 |
T |
|
| Q |
418 |
tcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttctcaccttttggacaaccataaccacatgaaccacaataatgatt |
517 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
3231 |
tcacagcacctttatcaacagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgatt |
3330 |
T |
|
| Q |
518 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattttggaatccttcttgtgtacaat |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3331 |
ccctggtgaatttcttggcacataatcaacttttaagccaagattttgacacccttttcttaatacttgattttggaatccttcttgtgtacaat |
3425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 396 - 549
Target Start/End: Original strand, 33521947 - 33522105
Alignment:
| Q |
396 |
tcagctttgcatcctgttattatcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttc-----tcaccttttggacaacc |
490 |
Q |
| |
|
||||||||||||| ||||| ||| |||||| | | ||| |||||||| |||||||||||| | | ||||||||||| || ||||||| |||||| |
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|
| T |
33521947 |
tcagctttgcatcttgttagtattacagcaccgtgttccacagcatcgacaagccatgtaacatcggtcccttgttttgtttatctccttttgtacaacc |
33522046 |
T |
|
| Q |
491 |
ataaccacatgaaccacaataatgattccctggtgaatttcttggcacataatcaactt |
549 |
Q |
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||| ||| |||||||| ||||||| | ||| ||||||||| ||||||||||| |||| |
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| T |
33522047 |
atagttacaagaaccacagtaatgatgctctgatgaatttctcggcacataatcgactt |
33522105 |
T |
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