View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16063_low_6 (Length: 308)
Name: NF16063_low_6
Description: NF16063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16063_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 27589734 - 27589456
Alignment:
| Q |
19 |
gcatcctaaattcagggctagattcagaaaacaaaaggagcaccggacctagattctctcaattaatcacaggtttgtggttttctgtttaaacttttgc |
118 |
Q |
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| T |
27589734 |
gcatcctaaattcagggctagattcagaaaacaaaaggagcaccggacctagattctctcaattaatcacaggtttgtggttttctgtttaaacttttgc |
27589635 |
T |
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| Q |
119 |
attgttgcagtctaaaatattgtttgaatttaatgtgcaggatgttttgtagcacaaacaattctcattgaagcatgtctggtgcccaacaagtgtttgt |
218 |
Q |
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| T |
27589634 |
attgttgcagtctaaaatattgtttgaatttaatgtgcaggatgttttgtagcacaaacaattctcattgaagcatgtctggtgcccaacaagtgtttgt |
27589535 |
T |
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| Q |
219 |
gttcgacacatgcgattacatgtaagtgtcgagtccggtgtcatgcttcatagggaggatggtttttcatatggttcat |
297 |
Q |
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| T |
27589534 |
gttcgacacatgcgattacatgtaagtgtcgagtccggtgtcatgcttcatagggaggatggtttttcatatggttcat |
27589456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 115 - 297
Target Start/End: Complemental strand, 27673624 - 27673442
Alignment:
| Q |
115 |
ttgcattgttgcagtctaaaatattgtttgaatttaatgtgcaggatgttttgtagcacaaacaattctcattgaagcatgtctggtgcccaacaagtgt |
214 |
Q |
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| T |
27673624 |
ttgcatttgtgcggtctaaaatattgtttgaatttaatatgcaggatgttttgtagcacaaacaattctcatagaagcatgtctggtgcccaacaagtgt |
27673525 |
T |
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| Q |
215 |
ttgtgttcgacacatgcgattacatgtaagtgtcgagtccggtgtcatgcttcatagggaggatggtttttcatatggttcat |
297 |
Q |
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| T |
27673524 |
ttgtgttcgacacatgcaattacatgtaagtgtcgagtccggtgtcatgcttgatagggaggatggtttttcatatggttcat |
27673442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 124 - 289
Target Start/End: Original strand, 26806245 - 26806426
Alignment:
| Q |
124 |
tgcagtctaaaatattgtttgaatttaatgtgcaggatgttttgtagcacaaacaattctcattgaagcatgtctggtgcccaacaagtgtttgtgtt-- |
221 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||||||| |||||||| || |
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| T |
26806245 |
tgcagtctagaatattgtttgaatttaatgttgaggatgttttgtagcacaaacacttcccgttgaagcatgtctggtgcccaacatgtgtttgttttca |
26806344 |
T |
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| Q |
222 |
--------------cgacacatgcgattacatgtaagtgtcgagtccggtgtcatgcttcatagggaggatggtttttcata |
289 |
Q |
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| T |
26806345 |
acactaacacgcaccaacacatgcgattacatgtaagtgtcaagtccggtgtcgtgcttcatagggaggatggtttttcata |
26806426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 27674158 - 27674067
Alignment:
| Q |
19 |
gcatcctaaattcagggctagattcagaaaacaaaaggagcaccggacctagattctctcaattaatcacaggtttgtggttttctgtttaaacttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27674158 |
gcatcctaaattcagggctagattcagaaaacaaaaagagcacca-----agattctctcaattaatcacaggtttgtggttttctgtttaaacttt |
27674067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 26806124 - 26806180
Alignment:
| Q |
25 |
taaattcagggctagattcagaaaacaaaaggagcaccggacctagattctctcaat |
81 |
Q |
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||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |
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| T |
26806124 |
taaattcagggctaggttcagaaaacaaaaagagcaccggagctagattctctcaat |
26806180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 26888967 - 26889027
Alignment:
| Q |
124 |
tgcagtctaaaatattgtttgaatttaatgtgcaggatgttttgtagcacaaacaattctc |
184 |
Q |
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| T |
26888967 |
tgcagtctaaaatattgtttcaatttactgtggaagatgctttgtagcacatacacttctc |
26889027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 264901 - 264819
Alignment:
| Q |
33 |
gggctagattcagaaaacaaaaggagcaccggacctagattctctcaattaatcacaggtttgtggttttctgtttaaacttt |
115 |
Q |
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| T |
264901 |
gggctagattcagaaaacaaaaggagcaccggagctagattctctcaattaatcgcaggtttgtggtttcctttttaaacttt |
264819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 264773 - 264669
Alignment:
| Q |
124 |
tgcagtctaaaatattgtttgaatttaatgtgcaggatgttttgtagcacaaacaattctcattga-agcatgtctggtgcccaacaagtgtttgtgttc |
222 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| || || |||| ||||||||||| ||||||||||| |
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| T |
264773 |
tgcagtctaaaatattgtttgaatataatgtggaggatgttttgtagcacaaacacttctcatagatggcgtgtcaggtgcccaacatatgtttgtgttc |
264674 |
T |
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| Q |
223 |
gacac |
227 |
Q |
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||||| |
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| T |
264673 |
gacac |
264669 |
T |
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