View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16063_low_9 (Length: 304)
Name: NF16063_low_9
Description: NF16063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16063_low_9 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] scaffold0208 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 304
Target Start/End: Original strand, 35916853 - 35917146
Alignment:
| Q |
7 |
gtgagatgaaactggaaaatttaatccaatcatctctaaatgatgcctatttctaattggtcaaactgaaattttcagtgagatcaaactgaaatttctc |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35916853 |
gtgagatcaaactggaaaatttaatccaatcatctctaaatgatgcctatttctaattggtcaaactgaaatttttagtgagatcaaactgaaatttctc |
35916952 |
T |
|
| Q |
107 |
aagtgcgaattctatatttgctcaaatgatgcataaatagttgtaacaataataatttatgtttacaggtnnnnnnnntgattaatctgttaactgaact |
206 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35916953 |
aaatgcgaattctatatttgctcaaatgatgcataaatagtttttacaataataatttatgtttacaggt---aaaaatgattaatctgttaactgaact |
35917049 |
T |
|
| Q |
207 |
caacaaataggtgattaaatgattagatgagaaagcctctcagtcgagtaaagaataggtgaccttagatcacccaagcaaagggaactaattctttc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35917050 |
caacaaataggtgattaaatgattagatgagaaagcttctcagtcgagtaaagaataggtgaccttagatcacccaagc-aagggaactaattctttc |
35917146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 12687015 - 12687076
Alignment:
| Q |
38 |
atctctaaatgatgcctatttctaattggtcaaactgaaattttcagtgagatcaaactgaa |
99 |
Q |
| |
|
|||||||||| ||| ||||||| || ||||| |||||||| || ||||||||||||||||| |
|
|
| T |
12687015 |
atctctaaatcatgtctatttccaactggtccaactgaaaactttagtgagatcaaactgaa |
12687076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 26509192 - 26509127
Alignment:
| Q |
38 |
atctctaaatgatgcctatttctaattggtcaaactgaaattttcagtgagatcaaactgaaattt |
103 |
Q |
| |
|
|||| ||||| ||| ||||||| ||||||||||||| || | || | ||||||||||||||||||| |
|
|
| T |
26509192 |
atctttaaatcatgtctatttccaattggtcaaactaaagtctttattgagatcaaactgaaattt |
26509127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 32095048 - 32095109
Alignment:
| Q |
38 |
atctctaaatgatgcctatttctaattggtcaaactgaaattttcagtgagatcaaactgaa |
99 |
Q |
| |
|
|||||||||| ||| ||||||| || ||||| |||||||| || ||||||||||||||||| |
|
|
| T |
32095048 |
atctctaaatcatgtctatttccaactggtccaactgaaaactttagtgagatcaaactgaa |
32095109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 11718 - 11657
Alignment:
| Q |
38 |
atctctaaatgatgcctatttctaattggtcaaactgaaattttcagtgagatcaaactgaa |
99 |
Q |
| |
|
|||||||||| ||| ||||||| || ||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
11718 |
atctctaaatcatgtctatttccaactggtccaactgaaaattttagtgagatcaaactgaa |
11657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 10239039 - 10239100
Alignment:
| Q |
38 |
atctctaaatgatgcctatttctaattggtcaaactgaaattttcagtgagatcaaactgaa |
99 |
Q |
| |
|
|||||||||| ||| ||||||| || ||||| |||||||| || ||||||||||||||||| |
|
|
| T |
10239039 |
atctctaaatcatgtctatttccaactggtccaactgaaaactttagtgagatcaaactgaa |
10239100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 10761476 - 10761537
Alignment:
| Q |
38 |
atctctaaatgatgcctatttctaattggtcaaactgaaattttcagtgagatcaaactgaa |
99 |
Q |
| |
|
|||||||||| ||| ||||||| || ||||| |||||||| || ||||||||||||||||| |
|
|
| T |
10761476 |
atctctaaatcatgtctatttccaactggtccaactgaaaactttagtgagatcaaactgaa |
10761537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University