View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16064_high_15 (Length: 340)

Name: NF16064_high_15
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16064_high_15
NF16064_high_15
[»] chr7 (13 HSPs)
chr7 (10-340)||(35241066-35241398)
chr7 (197-340)||(1483986-1484129)
chr7 (197-340)||(37997051-37997194)
chr7 (197-340)||(2947453-2947596)
chr7 (197-340)||(33142853-33142996)
chr7 (197-340)||(6484492-6484635)
chr7 (197-340)||(47490779-47490922)
chr7 (221-340)||(328256-328374)
chr7 (261-340)||(12653797-12653876)
chr7 (261-340)||(37625715-37625794)
chr7 (239-334)||(26049606-26049700)
chr7 (239-294)||(29511806-29511861)
chr7 (235-297)||(36845105-36845167)
[»] chr5 (5 HSPs)
chr5 (10-340)||(16049704-16050042)
chr5 (211-340)||(41197009-41197138)
chr5 (197-340)||(35470847-35470989)
chr5 (235-297)||(42650840-42650902)
chr5 (220-332)||(6382955-6383062)
[»] chr3 (5 HSPs)
chr3 (189-340)||(30593780-30593931)
chr3 (17-167)||(30593963-30594112)
chr3 (197-340)||(50036292-50036432)
chr3 (239-307)||(53714561-53714629)
chr3 (261-307)||(11267055-11267101)
[»] chr8 (8 HSPs)
chr8 (197-340)||(37784973-37785116)
chr8 (198-340)||(35971179-35971321)
chr8 (220-340)||(2707561-2707681)
chr8 (71-165)||(32966268-32966362)
chr8 (196-339)||(7217642-7217780)
chr8 (261-340)||(45274936-45275015)
chr8 (288-338)||(40551676-40551726)
chr8 (247-307)||(5432915-5432975)
[»] chr1 (5 HSPs)
chr1 (197-340)||(49304638-49304781)
chr1 (211-340)||(16264632-16264761)
chr1 (220-340)||(47139501-47139616)
chr1 (236-307)||(45597698-45597769)
chr1 (220-340)||(46210525-46210640)
[»] scaffold0015 (1 HSPs)
scaffold0015 (197-340)||(35001-35144)
[»] chr6 (2 HSPs)
chr6 (197-340)||(26419937-26420080)
chr6 (197-340)||(14800449-14800592)
[»] chr4 (3 HSPs)
chr4 (197-340)||(6231008-6231151)
chr4 (197-340)||(56396471-56396614)
chr4 (233-334)||(5826766-5826866)
[»] chr2 (3 HSPs)
chr2 (197-340)||(23989257-23989400)
chr2 (211-340)||(29100974-29101103)
chr2 (236-297)||(6084954-6085015)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 35241066 - 35241398
Alignment:
Q  10 tagattattctccagggaagcattaaattagaaacggaagagtgtaaatttaaatcttgcagaaaatcattaacccattttcaatttagattaagtaact 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  35241066 tagattcttctccagggaagcattaaattagaaacggaagagtgtaaatttaaatcttgcggaaaatcattaacccattttcagtttagattaagtaact 35241165  T
Q  110 ccatagatgttagatgtccagaagaattacgaaggtgggagtaagaacaagagattga-nnnnnnnnnnnnnnnngacaa-agattgatgttgttgtttg 207  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||                  |||| |||||||||||||||||||    
T  35241166 ccatagatgttagatgtccaggagaattacgaaggtgagagtaagaacaagatattgatgtttttttttgacaaaaacaagagattgatgttgttgtttg 35241265  T
Q  208 tggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtctt 307  Q
    ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  35241266 tggtgggcgagtaagagacatagatggggaaagagaaagatgatggaacatattgtaaaaataatttaatgtttagaaaatatgataatactatagtctt 35241365  T
Q  308 caaaagctttcaagtacatccaatggttgacat 340  Q
    |||||| |||||||||||||||||  |||||||    
T  35241366 caaaagttttcaagtacatccaatcattgacat 35241398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 197 - 340
Target Start/End: Complemental strand, 1484129 - 1483986
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || ||| |||| |||||| |||||  |||||||||||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||    
T  1484129 gttgttgttgttgttggacgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtaaaaataatctaatgtttaaagagtatgataat 1484030  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  1484029 actatggtcttcaaaagttttcaagcacatccaatggttgacat 1483986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 197 - 340
Target Start/End: Complemental strand, 37997194 - 37997051
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  37997194 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 37997095  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  37997094 actatggtcttcaaaagttttcaagcacatccaatggttgacat 37997051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 340
Target Start/End: Original strand, 2947453 - 2947596
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| ||| |||||    
T  2947453 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtataataat 2947552  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  2947553 actatggtcttcaaaagttttcaagcacatccaatggttgacat 2947596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 340
Target Start/End: Original strand, 33142853 - 33142996
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  33142853 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 33142952  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||||||| ||||| ||||||||||||    
T  33142953 actatggtcttcaaaagttttcaagcacatcaaatggttgacat 33142996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 340
Target Start/End: Original strand, 6484492 - 6484635
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || |||||||| |||| | |||||  |||||||||||| ||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  6484492 gttgttgttgttgttgggcgagtaagaaatatggagagggaaagagaaacatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 6484591  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||||||| ||||||||| ||||||||    
T  6484592 actatggtcttcaaaagttttcaagcacatccaatagttgacat 6484635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 340
Target Start/End: Complemental strand, 47490922 - 47490779
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || |||||||| |||||| |||||  | |||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  47490922 gttgttgttgttgttgggcgagtaagagatatggagagagaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 47490823  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||| ||| ||||| ||||||||||||    
T  47490822 actatggtcttcaaaagtttttaagcacatctaatggttgacat 47490779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 221 - 340
Target Start/End: Complemental strand, 328374 - 328256
Alignment:
Q  221 agagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtcttcaaaagctttcaa 320  Q
    |||||||||||  | || ||||||  ||||| ||||||| ||||||||||||||| |||| ||||| |||  ||||||||| ||||||||||||||||||    
T  328374 agagacatggagagagagagagaagaatgatggaacatagtgtaaaaataatctagtgttgagagagtatt-taatactatggtcttcaaaagctttcaa 328276  T
Q  321 gtacatccaatggttgacat 340  Q
     || ||||||||||||||||    
T  328275 atatatccaatggttgacat 328256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 12653876 - 12653797
Alignment:
Q  261 tgtaaaaataatctaatgtttagagattatgataatactatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    |||||||| ||| || |||| ||||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||||    
T  12653876 tgtaaaaagaatgtagtgttgagagagtatgataataccatggtcttcaaaaaatttcaagtacatccaatggttgacat 12653797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 37625794 - 37625715
Alignment:
Q  261 tgtaaaaataatctaatgtttagagattatgataatactatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    |||||||| ||| || |||| ||||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||||    
T  37625794 tgtaaaaagaatgtagtgttgagagagtatgataataccatggtcttcaaaaaatttcaagtacatccaatggttgacat 37625715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 26049606 - 26049700
Alignment:
Q  239 agagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtcttcaaaagctttcaagtacatccaatggt 334  Q
    |||||| |||||| |||||| | ||||||| |||||| |||| ||||| | |||||||||||| ||||| ||||  |||||||| ||||| |||||    
T  26049606 agagaatgatgatggaacatgt-gtaaaaagaatctagtgttgagagagtgtgataatactatggtctttaaaatttttcaagttcatcctatggt 26049700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 29511806 - 29511861
Alignment:
Q  239 agagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgata 294  Q
    ||||||||||||| ||| ||  |||||||||||||||||||| ||||| |||||||    
T  29511806 agagaaagatgatggaagatgatgtaaaaataatctaatgttgagagactatgata 29511861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 36845105 - 36845167
Alignment:
Q  235 ggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataata 297  Q
    |||||||||| |||||| ||| ||| ||||||||||||||| |||| || || ||||||||||    
T  36845105 ggaaagagaaggatgatggaagataatgtaaaaataatctagtgttgagggactatgataata 36845167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 340
Target Start/End: Complemental strand, 16050042 - 16049704
Alignment:
Q  10 tagattattctccagggaagcattaaattagaaacggaagagtgtaaatttaa----atcttgcagaaaatcattaacccattttcaatttagattaagt 105  Q
    |||||| ||||| |||||||||||||||||||| ||||||||| |||||||||    ||||||| |||||||||||||||||||||||||||||||||||    
T  16050042 tagattcttctctagggaagcattaaattagaagcggaagagtctaaatttaattaaatcttgcggaaaatcattaacccattttcaatttagattaagt 16049943  T
Q  106 aactccatagatgttagatgtccagaagaattacgaaggtgggagtaagaacaagagattgannnnnnnnnnnnnnnngacaa----agattgatgttgt 201  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||                 | ||    |||||||||||||    
T  16049942 aactccatagatgttagatgtgcaggagaattacgaaggtgggagtaagaacaagagattgatggtttttttttttacaaaaacaagagattgatgttgt 16049843  T
Q  202 tgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactat 301  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  16049842 tgtttgtggtgggcgagtaagagacatggatggaaaaagagaaagatgatgaaacatattgtaaaaataatctaatatttagagagtatgataatactat 16049743  T
Q  302 agtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    | |||||||||  |||||  |||||| ||||||||||||    
T  16049742 aatcttcaaaaaatttcagatacatctaatggttgacat 16049704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 211 - 340
Target Start/End: Original strand, 41197009 - 41197138
Alignment:
Q  211 tgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtcttcaa 310  Q
    |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||||||| ||||||||    
T  41197009 tgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataatactatggtcttcaa 41197108  T
Q  311 aagctttcaagtacatccaatggttgacat 340  Q
    ||| ||||||  ||||||||||||||||||    
T  41197109 aagttttcaaacacatccaatggttgacat 41197138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 197 - 340
Target Start/End: Complemental strand, 35470989 - 35470847
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  35470989 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 35470890  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||||||| ||| ||||||||||||||    
T  35470889 actatggtcttcaaaagttttcaagcaca-ccaatggttgacat 35470847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 42650902 - 42650840
Alignment:
Q  235 ggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataata 297  Q
    |||||||||| |||||| ||| ||| ||||||||||||||| |||| | ||| ||||||||||    
T  42650902 ggaaagagaaggatgatggaagataatgtaaaaataatctagtgttgaaagactatgataata 42650840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 6383062 - 6382955
Alignment:
Q  220 aagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtcttcaaaagctttca 319  Q
    |||| ||||||| ||||| |||||| |||||| |||     |||||||| ||| ||  ||| ||||| |||||||||||  | ||||||||||  |||||    
T  6383062 aagaaacatggagggggagagagaatgatgatcgaa-----tgtaaaaagaatgtagcgttgagagagtatgataataccgtggtcttcaaaaaatttca 6382968  T
Q  320 agtacatccaatg 332  Q
    |||||||||||||    
T  6382967 agtacatccaatg 6382955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 189 - 340
Target Start/End: Complemental strand, 30593931 - 30593780
Alignment:
Q  189 agattgatgttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagatt 288  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  30593931 agattgatgttgttgtttgtggtgggcgagtaagagacatggatggggaaagagaaagatgatggaacatattgtaaaaataatctaatgtttagagagt 30593832  T
Q  289 atgataatactatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30593831 atgataatattatagtcttcaaaagctttcaagtacatccaatggttgacat 30593780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 30594112 - 30593963
Alignment:
Q  17 ttctccagggaagcattaaattagaaacggaagagtgtaaatttaaatcttgcagaaaatcattaacccattttcaatttagattaagtaactccataga 116  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||    
T  30594112 ttctccatggaagcattaaattagaaatggaagagtgtaaatttaaatcttgcggaaagtcatta-cccattttcaatttagattaagtaactccataga 30594014  T
Q  117 tgttagatgtccagaagaattacgaaggtgggagtaagaacaagagattga 167  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30594013 tgttagatgtccaggagaattacgaaggtgggagtaagaacaagagattga 30593963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 197 - 340
Target Start/End: Original strand, 50036292 - 50036432
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || ||||| || |||||| |||||  ||||||||||| ||||   ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  50036292 gttgttgttgttgttgggccaggaagagatatggagagggaaagagaatgatg---gaacatagtgtgaaaataatctaatgtttaaagagtatgataat 50036388  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    | ||| |||||| |||| ||||||| ||||||||| ||||||||    
T  50036389 attatggtcttctaaagttttcaagcacatccaatagttgacat 50036432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 53714629 - 53714561
Alignment:
Q  239 agagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtctt 307  Q
    |||||| |||||| ||| ||| |||||||||||| ||||||| ||||| |||||||||||||| |||||    
T  53714629 agagaaggatgatggaagataatgtaaaaataatataatgttgagagactatgataatactatggtctt 53714561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 11267101 - 11267055
Alignment:
Q  261 tgtaaaaataatctaatgtttagagattatgataatactatagtctt 307  Q
    |||||||||||| ||||||| ||||| |||||||||||||| |||||    
T  11267101 tgtaaaaataatataatgttgagagactatgataatactatggtctt 11267055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 197 - 340
Target Start/End: Complemental strand, 37785116 - 37784973
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||    
T  37785116 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtaaaaataatctaatgtttaaagagtatgataat 37785017  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  37785016 actatggtcttcaaaagttttcaagcacatccaatggttgacat 37784973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 198 - 340
Target Start/End: Complemental strand, 35971321 - 35971179
Alignment:
Q  198 ttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataata 297  Q
    ||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| | | ||||||||||    
T  35971321 ttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaaaagtatgataata 35971222  T
Q  298 ctatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||    
T  35971221 ctatggtcttcaaaagttttcaagcacatccaatggttgacat 35971179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 220 - 340
Target Start/End: Original strand, 2707561 - 2707681
Alignment:
Q  220 aagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtcttcaaaagctttca 319  Q
    |||||| |||||  |||||||||||||||||| ||||||  ||| |||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||    
T  2707561 aagagatatggagagggaaagagaaagatgatggaacatggtgtgaaaataatctaatgtttaaagagtatgataatactatggtcttcaaaagttttca 2707660  T
Q  320 agtacatccaatggttgacat 340  Q
    || ||||||||||||||||||    
T  2707661 agcacatccaatggttgacat 2707681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 32966362 - 32966268
Alignment:
Q  71 gaaaatcattaacccattttcaatttagattaagtaactccatagatgttagatgtccagaagaattacgaaggtgggagtaagaacaagagatt 165  Q
    ||||||||||||| || ||||||||||||||||  |||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  32966362 gaaaatcattaacacaatttcaatttagattaaacaacttcatagatgttagatgtccaggagaattatgaaggtgggagcaagaacaagagatt 32966268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 196 - 339
Target Start/End: Original strand, 7217642 - 7217780
Alignment:
Q  196 tgttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataa 295  Q
    ||||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| |||      ||| ||||||||| ||| ||||||||    
T  7217642 tgttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgt-----gaatataatgtttaaagagtatgataa 7217736  T
Q  296 tactatagtcttcaaaagctttcaagtacatccaatggttgaca 339  Q
    |||||| ||||||||||| ||||||| |||||||||| ||||||    
T  7217737 tactatggtcttcaaaagttttcaagcacatccaatgattgaca 7217780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 45274936 - 45275015
Alignment:
Q  261 tgtaaaaataatctaatgtttagagattatgataatactatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    |||||||| ||| || |||| ||||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||||    
T  45274936 tgtaaaaagaatgtagtgttgagagagtatgataataccatggtcttcaaaaaatttcaagtacatccaatggttgacat 45275015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 40551676 - 40551726
Alignment:
Q  288 tatgataatactatagtcttcaaaagctttcaagtacatccaatggttgac 338  Q
    |||||||||||  | ||||||||||  ||||||||||||||||||||||||    
T  40551676 tatgataataccgtggtcttcaaaaaatttcaagtacatccaatggttgac 40551726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 5432975 - 5432915
Alignment:
Q  247 atgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtctt 307  Q
    ||||| ||| ||| || ||||||||||||||||| ||||| ||||||| ||| ||||||||    
T  5432975 atgatggaagataatgaaaaaataatctaatgttgagagactatgatattaccatagtctt 5432915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 197 - 340
Target Start/End: Original strand, 49304638 - 49304781
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  49304638 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 49304737  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||    
T  49304738 actatagtcttcaaaagttttcaagcacatccaatggttgacat 49304781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 340
Target Start/End: Original strand, 16264632 - 16264761
Alignment:
Q  211 tgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtcttcaa 310  Q
    ||||| || |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| ||||||||||||||  |||||||    
T  16264632 tgggcaagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataatactatgatcttcaa 16264731  T
Q  311 aagctttcaagtacatccaatggttgacat 340  Q
    ||| ||||||| ||||||||||||| ||||    
T  16264732 aagttttcaagcacatccaatggttaacat 16264761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 340
Target Start/End: Original strand, 47139501 - 47139616
Alignment:
Q  220 aagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtcttcaaaagctttca 319  Q
    |||| ||||||| ||||| |||||| |||||| |||     |||||||| ||| || |||| | ||| ||||||||||| || ||||||||||  |||||    
T  47139501 aagaaacatggagggggagagagaatgatgatggaa-----tgtaaaaagaatgtagtgttgaaagagtatgataataccatggtcttcaaaaaatttca 47139595  T
Q  320 agtacatccaatggttgacat 340  Q
    |||||||||||||||||||||    
T  47139596 agtacatccaatggttgacat 47139616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 45597769 - 45597698
Alignment:
Q  236 gaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtctt 307  Q
    ||||||||| |||||| ||| ||| |||||||||||| ||||||| ||||| |||||||||||||| |||||    
T  45597769 gaaagagaaggatgatggaagataatgtaaaaataatataatgttgagagactatgataatactatggtctt 45597698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 340
Target Start/End: Complemental strand, 46210640 - 46210525
Alignment:
Q  220 aagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtcttcaaaagctttca 319  Q
    |||| ||||||| ||||| |||||| |||||| |||     |||||||| ||| || |||| ||||| ||||||||||| ||  | |||||||  |||||    
T  46210640 aagaaacatggagggggagagagaatgatgatggaa-----tgtaaaaagaatgtagtgttgagagagtatgataataccatgattttcaaaaaatttca 46210546  T
Q  320 agtacatccaatggttgacat 340  Q
    |||||||||||||||||||||    
T  46210545 agtacatccaatggttgacat 46210525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 340
Target Start/End: Complemental strand, 35144 - 35001
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || ||| |||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  35144 gttgttgttgttgttggacgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 35045  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  35044 actatggtcttcaaaagttttcaagcacatccaatggttgacat 35001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 340
Target Start/End: Complemental strand, 26420080 - 26419937
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  26420080 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 26419981  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||||||| ||||| ||||||||||||    
T  26419980 actatggtcttcaaaagttttcaagcacatctaatggttgacat 26419937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 197 - 340
Target Start/End: Original strand, 14800449 - 14800592
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||| ||||||||| ||| |||||||||    
T  14800449 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatataatgtttaaagagtatgataat 14800548  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||||||| |||||||||| |||||||    
T  14800549 actatggtcttcaaaagttttcaagcacatccaatgattgacat 14800592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 340
Target Start/End: Original strand, 6231008 - 6231151
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || ||| |||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  6231008 gttgttgttgttgttggacgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 6231107  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  6231108 actatggtcttcaaaagttttcaagcacatccaatggttgacat 6231151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 340
Target Start/End: Original strand, 56396471 - 56396614
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || |||||||| |||||| ||| |  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  56396471 gttgttgttgttgttgggcgagtaagagatatgaagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 56396570  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  56396571 actatggtcttcaaaagttttcaagcacatccaatggttgacat 56396614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 5826866 - 5826766
Alignment:
Q  233 ggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtcttcaaaagctttcaagtacatccaatg 332  Q
    ||||| |||||| |||||| |||||| | ||||||| |||||| |||| | ||| | |||||||||||| ||||||||||  |||||||| ||||| |||    
T  5826866 ggggagagagaatgatgatggaacatgt-gtaaaaagaatctagtgttgatagagtgtgataatactatggtcttcaaaacttttcaagttcatcctatg 5826768  T
Q  333 gt 334  Q
    ||    
T  5826767 gt 5826766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 340
Target Start/End: Original strand, 23989257 - 23989400
Alignment:
Q  197 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 296  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  23989257 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacataatgtgaaaataatctaatgtttaaagagtatgataat 23989356  T
Q  297 actatagtcttcaaaagctttcaagtacatccaatggttgacat 340  Q
    |||||  |||||||||| ||||||| ||||||||||||||||||    
T  23989357 actatgatcttcaaaagttttcaagcacatccaatggttgacat 23989400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 211 - 340
Target Start/End: Original strand, 29100974 - 29101103
Alignment:
Q  211 tgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatactatagtcttcaa 310  Q
    |||||||| |||||| | |||  ||||||||||| |||||| ||||||| ||| |||||||| ||||||||| ||| |||||||||||||| ||||||||    
T  29100974 tgggcgagtaagagatacggagagggaaagagaatgatgatggaacatagtgtgaaaataatataatgtttaaagagtatgataatactatggtcttcaa 29101073  T
Q  311 aagctttcaagtacatccaatggttgacat 340  Q
    ||| ||||||| |||||||||| |||||||    
T  29101074 aagttttcaagcacatccaatgattgacat 29101103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 6085015 - 6084954
Alignment:
Q  236 gaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataata 297  Q
    ||||||||| |||||| ||| ||| ||||||||||||||| |||| | ||| ||||||||||    
T  6085015 gaaagagaaggatgatggaagataatgtaaaaataatctagtgttgaaagactatgataata 6084954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University