View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16064_high_18 (Length: 265)
Name: NF16064_high_18
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 9374171 - 9373938
Alignment:
| Q |
18 |
taattaacacaaaaaagattcacaacatttgcgaataatttcatatctcttgctgcccactcgattatgtcaaaatgaaacttcctgcatgataaagaaa |
117 |
Q |
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| T |
9374171 |
taattaacacaaaaaagattcacaacatttgcgaataatttcatatctcttgctgcccactcgattatgtcaaaatgaaacttcctgcatgataaagaaa |
9374072 |
T |
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| Q |
118 |
acgaaacttctgcgcttctttcccgtttccaccattttactatgcaattggtttattagaagactaattgttcgtcgaattgtcatcataaaacatattt |
217 |
Q |
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| T |
9374071 |
acgaaacttctgcgcttctttcccgtttccaccattttactatggaattggtttattagaagactaattgttcgtcgaattgtcatcataaaacatattt |
9373972 |
T |
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| Q |
218 |
gtcaatacctctccctttcttatatctttcacag |
251 |
Q |
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| T |
9373971 |
gtcaatacctctccctttcttatatctttcacag |
9373938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 55 - 248
Target Start/End: Complemental strand, 9369653 - 9369456
Alignment:
| Q |
55 |
atttcatatctcttgctgcccactcgattatgtcaaaatgaaacttcctgcatgataaagaaaacgaaacttc----tgcgcttctttcccgtttccacc |
150 |
Q |
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| T |
9369653 |
atttcatatcccttgctgcccactccattatgtcaaaatgaaacttcctgtctcataaaaaaattgaaacttcctactctgcttctttcccgtttccacc |
9369554 |
T |
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| Q |
151 |
attttactatgcaattggtttattagaagactaattgttcgtcgaattgtcatcataaaacatatttgtcaatacctctccctttcttatatctttca |
248 |
Q |
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| T |
9369553 |
attttactatgaaattgatttattggaagactaattgttcgtggaattgtcatcataaaacatatttgtcaatacctctccctttcttatatttttca |
9369456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 9390860 - 9390671
Alignment:
| Q |
55 |
atttcatatctcttgctgcccactcgattatgtcaaaatgaaacttcctgcatgataaagaaaacgaaacttc----tgcgcttctttcccgtttccacc |
150 |
Q |
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||||||||||||||||| | ||||| ||||||||||| ||||||||||| |||||| ||| |||||||| || ||||||||||||||||||| |
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| T |
9390860 |
atttcatatctcttgcttctcactcaattatgtcaaactgaaacttcctatccgataaaagaaatgaaacttcctactgtgcttctttcccgtttccaca |
9390761 |
T |
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| Q |
151 |
attttactatgcaattggtttattagaagactaattgttcgtcgaattgtcatcataaaacatatttgtcaatacctctccctttcttat |
240 |
Q |
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| T |
9390760 |
attttactatgaaattggtttattagaaaactaattgttcgtcgaattgtcgtcataaaatatatttgtcaatacctctccctttcttat |
9390671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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