View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16064_high_3 (Length: 600)

Name: NF16064_high_3
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16064_high_3
NF16064_high_3
[»] chr6 (2 HSPs)
chr6 (29-391)||(15908423-15908785)
chr6 (401-554)||(3533780-3533939)
[»] scaffold0690 (1 HSPs)
scaffold0690 (39-391)||(3312-3665)
[»] chr4 (5 HSPs)
chr4 (401-584)||(53480487-53480670)
chr4 (401-512)||(31182763-31182874)
chr4 (253-384)||(54005115-54005247)
chr4 (304-386)||(39477459-39477541)
chr4 (301-329)||(47555401-47555429)
[»] chr3 (1 HSPs)
chr3 (401-590)||(43857997-43858192)
[»] chr7 (5 HSPs)
chr7 (401-592)||(1718447-1718642)
chr7 (401-567)||(43883687-43883852)
chr7 (260-390)||(21933245-21933372)
chr7 (261-354)||(8561823-8561916)
chr7 (223-282)||(18976525-18976584)
[»] chr1 (6 HSPs)
chr1 (401-590)||(46268925-46269120)
chr1 (434-579)||(48242403-48242547)
chr1 (94-132)||(9338634-9338672)
chr1 (238-348)||(15738440-15738560)
chr1 (401-446)||(81394-81439)
chr1 (546-579)||(10491433-10491466)
[»] chr2 (3 HSPs)
chr2 (258-390)||(24773769-24773900)
chr2 (246-390)||(19005263-19005409)
chr2 (401-454)||(30845840-30845893)
[»] chr8 (1 HSPs)
chr8 (401-491)||(3405029-3405119)
[»] chr5 (3 HSPs)
chr5 (497-575)||(41800568-41800645)
chr5 (401-459)||(38099588-38099646)
chr5 (222-282)||(17289445-17289505)


Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 29 - 391
Target Start/End: Original strand, 15908423 - 15908785
Alignment:
Q  29 tttggcagacaattaatttggctggttcaatcacaggtttccatttattttaattacagcagaaacagctaataagaacataggttgctatggtgcgttt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15908423 tttggcagacaattaatttggctggttcaatcacaggtttccatttattttaattacagcagaaacagctaataagaacataggttgctatggtgcgttt 15908522  T
Q  129 attaacaatattcgaactgtaagtatggtaggtatattggtaaggaaattaagtaacaatggtaagaaaaccagaaattatacatgtttggccgcagtgg 228  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15908523 attaataatattcgaactctaagtatggtaggtatattggtaaggaaattaagtaacaatggtaagaaaaccagaaattatacatgtttggccgcagtgg 15908622  T
Q  229 cggagccagaaaagaagtctcgggtgggtcgctaaaataaacaataaagtacaatataatattttttggtgtatcttttatagttttattttagttgtct 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15908623 cggagccagaaaagaagtctcgggtgggtcgctaaaataaacaataaagtacaatataatattttttggtgtatcttttatagttttattttagttgtct 15908722  T
Q  329 ttaacaagaaatgtaatataattaactcatatagtattaacaactccaaaacatattttatcg 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  15908723 ttaacaagaaatgtaatataattaactcatatagtattaacaactctagaacatattttatcg 15908785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 401 - 554
Target Start/End: Complemental strand, 3533939 - 3533780
Alignment:
Q  401 aacaaatcaaaatagaattatattactcaaacaacaatgatcaccctgcacaaggtgtgcaatggaggagcattggttaaaaatttacaaaatcgtgatg 500  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| ||||||||||||||||| || |||||    
T  3533939 aacaaatcaaaatggaattatattactcaaacaacaatgatcaccctgcacaaggagtgcaaagggggagcatcggttaaaaatttacaaagtcatgatg 3533840  T
Q  501 ccaacaaaca-gagcaccaccaaact-----cacctaattacaacatagcacccatacaa 554  Q
    |||||||||| |||||||||| |||      ||||||||||||||| |||||||||||||    
T  3533839 ccaacaaacaagagcaccacctaacctaacccacctaattacaacaaagcacccatacaa 3533780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 39 - 391
Target Start/End: Complemental strand, 3665 - 3312
Alignment:
Q  39 aattaatttggctggttcaatcacaggtttccatttattttaattacagcagaaacagctaataagaacataggttgctatggtgcgtttattaacaata 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3665 aattaatttggctggttcaatcacaggtttccatttattttaattacagcagaaacagctaataagaacataggttgctatggtgcgtttattaacaata 3566  T
Q  139 ttcgaactgtaagtatggtaggtatattggtaaggaaattaagtaacaatggtaagaaaaccagaaattatacatgtttggccgcagtggcggagccaga 238  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3565 ttcgaactataagtatggtaggtatattggtaaggaaattaagtaacaatggtaagaaaaccagaaattatacatgtttggccgcagtggcggagccaga 3466  T
Q  239 aaagaagtctcgggtgggtcgctaaaataaacaataaagtacaatataatatt-ttttggtgtatcttttatagttttattttagttgtctttaacaaga 337  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  3465 aaagaagtctcgggtgggtcgctaaaataaacaataaagtgcaatataatatttttttggtgtatcttttctagttttattttagttgtctttaacaaga 3366  T
Q  338 aatgtaatataattaactcatatagtattaacaactccaaaacatattttatcg 391  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  3365 aatgtaatataattaactcatatagtattaacaactctagaacatattttatcg 3312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 8e-78; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 401 - 584
Target Start/End: Original strand, 53480487 - 53480670
Alignment:
Q  401 aacaaatcaaaatagaattatattactcaaacaacaatgatcaccctgcacaaggtgtgcaatggaggagcattggttaaaaatttacaaaatcgtgatg 500  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| || |||||    
T  53480487 aacaaatcaaaatggaattatattactcaaacaacaatgatcaccctgcacaaggtgtgcaaagggggagcatcggttaaaaatttacaaagtcatgatg 53480586  T
Q  501 ccaacaaacagagcaccaccaaactcacctaattacaacatagcacccatacaatgaatagggtgtttccaccaatcataaaaa 584  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53480587 ccaacaaactgagcaccaccaaacccacctaattacaacatagcacccatacaatgaataggatgtttccaccaatcataaaaa 53480670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 401 - 512
Target Start/End: Complemental strand, 31182874 - 31182763
Alignment:
Q  401 aacaaatcaaaatagaattatattactcaaacaacaatgatcaccctgcacaaggtgtgcaatggaggagcattggttaaaaatttacaaaatcgtgatg 500  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||    
T  31182874 aacaaatcaaaatggaattatattactcaaacaacaatgatcaccctgcacaaggtgtgcaaagggggagcatcggttaaaaatttacaaaatcgtgatg 31182775  T
Q  501 ccaacaaacaga 512  Q
    ||||||||||||    
T  31182774 ccaacaaacaga 31182763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 54005115 - 54005247
Alignment:
Q  253 tgggtcgctaaaataaacaataaagtacaatataatatt-ttttggtgtatcttttatagttttattttagttgtctttaacaagaaatgtaatataatt 351  Q
    |||| |||||||||||||||||||||| ||||| || || ||||  || ||||| |||||||||||||||||| |||| ||||| || |||||| || ||    
T  54005115 tgggccgctaaaataaacaataaagtataatatcattttatttttatgaatcttctatagttttattttagttatcttcaacaacaactgtaatttagtt 54005214  T
Q  352 aactcatatagtattaacaactccaaaacatat 384  Q
    ||||||||||||  |||||| || |||||||||    
T  54005215 aactcatatagtcctaacaattcaaaaacatat 54005247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 39477459 - 39477541
Alignment:
Q  304 ttttatagttttattttagttgtctttaacaagaaatgtaatataattaactcatatagtattaacaactccaaaacatattt 386  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||  ||||||  | |||||||||||    
T  39477459 ttttatagttttattttagttgtcttcaacaaaaaatgtaatatagttaactcttatagtcctaacaatacgaaaacatattt 39477541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 329
Target Start/End: Original strand, 47555401 - 47555429
Alignment:
Q  301 atcttttatagttttattttagttgtctt 329  Q
    |||||||||||||||||||||||||||||    
T  47555401 atcttttatagttttattttagttgtctt 47555429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 401 - 590
Target Start/End: Original strand, 43857997 - 43858192
Alignment:
Q  401 aacaaatcaaaatagaattatattactcaaacaacaatgatcaccctgcacaaggtgtgcaatggaggagcattggttaaaaatttacaaaatcgtgatg 500  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| || |||||||||||||| || |||||    
T  43857997 aacaaatcaaaatggaattatattactcaaacaacaatgatcaccctgcacaaggagtgcaaagggggagcatcgggtaaaaatttacaaagtcatgatg 43858096  T
Q  501 ccaacaaaca-gagcaccaccaaact-----cacctaattacaacatagcacccatacaatgaatagggtgtttccaccaatcataaaaagaataa 590  Q
    |||||||||| |||||||||| |||      |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  43858097 ccaacaaacaagagcaccacctaacctaacccacctaattacaacatagcacccatacaatgaatagggtgtttccaccaatcatgataagaataa 43858192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 401 - 592
Target Start/End: Complemental strand, 1718642 - 1718447
Alignment:
Q  401 aacaaatcaaaatagaattatattactcaaacaacaatgatcaccctgcacaaggtgtgcaatggaggagcattggttaaaaatttacaaaatcgtgatg 500  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| || | |||||  | |||||||||||||| || |||||    
T  1718642 aacaaatcaaaatggaattatattactcaaacaccaatgatcaccctgcacaaggagtgcaaaggggaagcatcaggtaaaaatttacaaagtcatgatg 1718543  T
Q  501 ccaacaaacagagcacc-----accaaactcacctaattacaacatagcacccatacaatgaatagggtgtttccaccaatcataaaaagaataatc 592  Q
    |||||||| ||||||||     ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||    
T  1718542 ccaacaaa-agagcaccacccaaccaaacccacctaattacaacataacacccatacaatgaatagggtgtttccaccaatcatgataagaataatc 1718447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 401 - 567
Target Start/End: Original strand, 43883687 - 43883852
Alignment:
Q  401 aacaaatcaaaatagaattatattactcaaacaacaatgatcaccctgcacaaggtgtgcaatggaggagcattggttaaaaatttacaaaatcgtgatg 500  Q
    ||||||||||||| |||||||||||||||||  |||||| |||||| ||||||||||||||| || ||| ||| ||| ||| ||||||||| |  |||||    
T  43883687 aacaaatcaaaatggaattatattactcaaaacacaatgctcaccccgcacaaggtgtgcaaggggggatcatcggtaaaatatttacaaagttatgatg 43883786  T
Q  501 ccaacaaacagagcaccaccaaactcacctaattacaacatagcacccatacaatgaatagggtgtt 567  Q
    ||||| |||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  43883787 ccaac-aacagagcaccaccaaaaccacctagttacaacatagcacccatacaatgaatagggtgtt 43883852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 260 - 390
Target Start/End: Original strand, 21933245 - 21933372
Alignment:
Q  260 ctaaaataaacaataaagtacaatataatattttttggtgtatcttttatagttttattttagttgtctttaacaagaaatgtaatataattaactcata 359  Q
    |||||| |||||||||||||||||||||| ||||||     |||||||||| |||||||||||||||||| || ||| ||||||||||| || ||||||     
T  21933245 ctaaaacaaacaataaagtacaatataattttttttta---atcttttataattttattttagttgtcttcaataaggaatgtaatatagttgactcatg 21933341  T
Q  360 tagtattaacaactccaaaacatattttatc 390  Q
    |||| ||||||| || ||||||| |||||||    
T  21933342 tagtcttaacaattcgaaaacatgttttatc 21933372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 261 - 354
Target Start/End: Original strand, 8561823 - 8561916
Alignment:
Q  261 taaaataaacaataaagtacaatataatattttttggtgtatcttttatagttttattttagttgtctttaacaagaaatgtaatataattaac 354  Q
    ||||||||||||| |||||||||||||| | |||||| | || |||||| ||||||||||| ||||||| |||||||||||||||||| |||||    
T  8561823 taaaataaacaatgaagtacaatataatttattttggcgaatattttatcgttttattttaattgtcttcaacaagaaatgtaatatagttaac 8561916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 18976584 - 18976525
Alignment:
Q  223 cagtggcggagccagaaaagaagtctcgggtgggtcgctaaaataaacaataaagtacaa 282  Q
    ||||||||||| ||||||| |||| | || |||| ||||||||||||| |||||||||||    
T  18976584 cagtggcggagtcagaaaaaaagtttgggatgggccgctaaaataaacgataaagtacaa 18976525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 401 - 590
Target Start/End: Original strand, 46268925 - 46269120
Alignment:
Q  401 aacaaatcaaaatagaattatattactcaaacaacaatgatcaccctgcacaaggtgtgcaatggaggagcattggttaaaaatttacaaaatcgtgatg 500  Q
    ||||||||||||| || |||||||| |||||||||||||||||||||||||||||  |||||  | ||||||| || |||||| ||||||| || |||||    
T  46268925 aacaaatcaaaatggatttatattaatcaaacaacaatgatcaccctgcacaaggaatgcaaaaggggagcatcgggtaaaaacttacaaagtcatgatg 46269024  T
Q  501 ccaacaaac-agagcacc-----accaaactcacctaattacaacatagcacccatacaatgaatagggtgtttccaccaatcataaaaagaataa 590  Q
    ||||||||| ||||||||     ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  46269025 ccaacaaacaagagcaccacctaaccaaacccacctaaatacaacatagcacccatacaatgaatagggtgtttccaccaatcatgataagaataa 46269120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 434 - 579
Target Start/End: Complemental strand, 48242547 - 48242403
Alignment:
Q  434 acaatgatcaccctgcacaaggtgtgcaatggaggagcattggttaaaaatttacaaaatcgtgatgccaacaaacagagcaccaccaaactcacctaat 533  Q
    |||||| |||||| ||||||||||||||| || ||| ||| ||| ||| ||||||||| |  |||||||||||| || ||||||||||||  |||||| |    
T  48242547 acaatgctcaccccgcacaaggtgtgcaaggggggatcatcggtaaaatatttacaaagttatgatgccaacaa-catagcaccaccaaaaccacctagt 48242449  T
Q  534 tacaacatagcacccatacaatgaatagggtgtttccaccaatcat 579  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||    
T  48242448 tacaacatagcacccatacaatgaatagggtgttggcaccaatcat 48242403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 9338672 - 9338634
Alignment:
Q  94 cagctaataagaacataggttgctatggtgcgtttatta 132  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9338672 cagctaataagaacataggttgctatggtgcgtttatta 9338634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 238 - 348
Target Start/End: Original strand, 15738440 - 15738560
Alignment:
Q  238 aaaagaagtctcgggtgggtcgctaaaataaacaataaagtacaatataa----tattttt--tggtgtatcttttatagttttatttt----agttgtc 327  Q
    |||| |||||||||||||| |  ||||||||||||||| |||||||||||    |||||||  |  | |||||||||||||||||||||    || ||||    
T  15738440 aaaaaaagtctcgggtgggccattaaaataaacaataacgtacaatataacttttattttttattttttatcttttatagttttattttaatcagctgtc 15738539  T
Q  328 tttaacaagaaatgtaatata 348  Q
    || ||||||||||||||||||    
T  15738540 ttcaacaagaaatgtaatata 15738560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 81394 - 81439
Alignment:
Q  401 aacaaatcaaaatagaattatattactcaaacaacaatgatcaccc 446  Q
    ||||||||||||| ||||||||||||| || |||| ||||||||||    
T  81394 aacaaatcaaaatggaattatattactaaaccaacgatgatcaccc 81439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 579
Target Start/End: Complemental strand, 10491466 - 10491433
Alignment:
Q  546 cccatacaatgaatagggtgtttccaccaatcat 579  Q
    ||||||||| ||||||||||||||||||||||||    
T  10491466 cccatacaaagaatagggtgtttccaccaatcat 10491433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 258 - 390
Target Start/End: Complemental strand, 24773900 - 24773769
Alignment:
Q  258 cgctaaaataaacaataaagtacaatataatattttttggtgtatcttttatagttttattttagttgtctttaacaagaaatgtaatataattaactca 357  Q
    |||||||||||||||||||||| |||||||| ||||||| |  |||||||||||||||| ||||| |||||| |||||||||||||| ||| ||||||||    
T  24773900 cgctaaaataaacaataaagtataatataattttttttgtta-atcttttatagttttaatttagctgtcttcaacaagaaatgtaacatagttaactca 24773802  T
Q  358 tatagtattaacaactccaaaacatattttatc 390  Q
    |||||| ||||||| || |||||||| ||||||    
T  24773801 tatagtcttaacaattcaaaaacatactttatc 24773769  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 246 - 390
Target Start/End: Complemental strand, 19005409 - 19005263
Alignment:
Q  246 tctcgggtgggtcgctaaaataaacaataaagtacaatata--atattttttggtgtatcttttatagttttattttagttgtctttaacaagaaatgta 343  Q
    |||||||| ||  ||||||||||||||||||||||||||||  || |||||| ||| ||||||||||||||||||||||||||||  |||||||||||||    
T  19005409 tctcgggttggctgctaaaataaacaataaagtacaatatataattttttttcgtgaatcttttatagttttattttagttgtctccaacaagaaatgta 19005310  T
Q  344 atataattaactcatatagtattaacaactccaaaacatattttatc 390  Q
    ||||   ||||||||||  |  |||||| || |||||||| ||||||    
T  19005309 atatcgctaactcatattatcctaacaattcaaaaacatactttatc 19005263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 401 - 454
Target Start/End: Original strand, 30845840 - 30845893
Alignment:
Q  401 aacaaatcaaaatagaattatattactcaaacaacaatgatcaccctgcacaag 454  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||| || |||||    
T  30845840 aacaaatcaaaatggaattatattacttaaacaccaatgatcaccttgtacaag 30845893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 3405029 - 3405119
Alignment:
Q  401 aacaaatcaaaatagaattatattactcaaacaacaatgatcaccctgcacaaggtgtgcaatggaggagcattggttaaaaatttacaaa 491  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| || ||||||| || ||||||||||||||    
T  3405029 aacaaatcaaaatggaattatattactcaaacaacaattatcaccctgcacaaggagtgcaaagggggagcatcgggtaaaaatttacaaa 3405119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 497 - 575
Target Start/End: Complemental strand, 41800645 - 41800568
Alignment:
Q  497 gatgccaacaaacagagcaccaccaaactcacctaattacaacatagcacccatacaatgaatagggtgtttccaccaa 575  Q
    ||||||||||| |||| |||||||||| ||||||| |||||| ||||||||||||||| ||  | ||||||||||||||    
T  41800645 gatgccaacaa-cagaacaccaccaaaatcacctagttacaaaatagcacccatacaaagaccatggtgtttccaccaa 41800568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 459
Target Start/End: Complemental strand, 38099646 - 38099588
Alignment:
Q  401 aacaaatcaaaatagaattatattactcaaacaacaatga-tcaccctgcacaaggtgtg 459  Q
    ||||||||||||| |||| ||||||||||||||| ||||| |||||| ||||||||||||    
T  38099646 aacaaatcaaaatggaat-atattactcaaacaaaaatgattcaccccgcacaaggtgtg 38099588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 17289445 - 17289505
Alignment:
Q  222 gcagtggcggagccagaaaagaagtctcgggtgggtcgctaaaataaacaataaagtacaa 282  Q
    |||||||||||||||  ||| |||| | || |||| ||||||||||||| |||||||||||    
T  17289445 gcagtggcggagccaagaaaaaagtttgggatgggccgctaaaataaacgataaagtacaa 17289505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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