View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16064_high_7 (Length: 415)

Name: NF16064_high_7
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16064_high_7
NF16064_high_7
[»] chr7 (39 HSPs)
chr7 (49-181)||(47443981-47444112)
chr7 (53-180)||(31657671-31657798)
chr7 (47-108)||(18046041-18046102)
chr7 (53-180)||(6607639-6607766)
chr7 (53-180)||(6626450-6626577)
chr7 (48-180)||(31849680-31849812)
chr7 (48-180)||(38816235-38816367)
chr7 (48-180)||(39102797-39102929)
chr7 (54-177)||(24000208-24000331)
chr7 (53-180)||(24164267-24164394)
chr7 (53-180)||(47913404-47913531)
chr7 (48-180)||(19276637-19276769)
chr7 (48-104)||(46972564-46972620)
chr7 (53-180)||(21766794-21766920)
chr7 (129-175)||(47443178-47443224)
chr7 (47-180)||(8952414-8952545)
chr7 (49-102)||(39140720-39140773)
chr7 (48-176)||(42665131-42665259)
chr7 (49-100)||(3312306-3312357)
chr7 (53-180)||(10336401-10336528)
chr7 (50-106)||(19587669-19587723)
chr7 (48-180)||(26174874-26175007)
chr7 (47-104)||(44141406-44141463)
chr7 (53-108)||(1795443-1795498)
chr7 (48-107)||(17356601-17356660)
chr7 (53-108)||(21276338-21276393)
chr7 (53-108)||(21438596-21438651)
chr7 (53-108)||(35193321-35193376)
chr7 (53-108)||(38567823-38567878)
chr7 (57-108)||(41320374-41320425)
chr7 (53-104)||(46294559-46294610)
chr7 (53-108)||(48863500-48863555)
chr7 (50-104)||(36965528-36965582)
chr7 (47-81)||(42666152-42666186)
chr7 (50-104)||(46293560-46293614)
chr7 (359-396)||(47443395-47443433)
chr7 (47-104)||(21276623-21276680)
chr7 (47-104)||(39139727-39139784)
chr7 (56-108)||(39384718-39384770)
[»] chr3 (31 HSPs)
chr3 (53-180)||(40036927-40037054)
chr3 (47-180)||(51754180-51754313)
chr3 (47-162)||(30427392-30427507)
chr3 (53-180)||(47358153-47358280)
chr3 (53-180)||(21441220-21441348)
chr3 (53-177)||(44398162-44398286)
chr3 (53-180)||(47982366-47982492)
chr3 (53-180)||(47991653-47991779)
chr3 (53-180)||(48000940-48001066)
chr3 (53-180)||(48010227-48010353)
chr3 (8-49)||(52957881-52957922)
chr3 (53-181)||(2892903-2893031)
chr3 (44-180)||(16222469-16222604)
chr3 (118-157)||(46015497-46015536)
chr3 (53-180)||(51761051-51761178)
chr3 (50-176)||(2891978-2892104)
chr3 (53-180)||(34682282-34682411)
chr3 (50-104)||(54036253-54036307)
chr3 (48-108)||(29352402-29352462)
chr3 (53-108)||(3017527-3017582)
chr3 (53-108)||(16222832-16222887)
chr3 (49-104)||(19987834-19987889)
chr3 (53-108)||(23461186-23461241)
chr3 (48-107)||(35565040-35565099)
chr3 (53-108)||(40393463-40393517)
chr3 (117-180)||(40791090-40791153)
chr3 (53-104)||(44638623-44638674)
chr3 (53-108)||(52836632-52836687)
chr3 (50-104)||(41496124-41496178)
chr3 (52-106)||(51885830-51885884)
chr3 (53-101)||(55328800-55328848)
[»] chr5 (30 HSPs)
chr5 (46-180)||(20166349-20166483)
chr5 (48-180)||(26408635-26408767)
chr5 (53-180)||(5907263-5907389)
chr5 (53-180)||(25945332-25945459)
chr5 (53-180)||(39412402-39412529)
chr5 (47-180)||(973823-973957)
chr5 (46-180)||(23592476-23592610)
chr5 (53-108)||(2268230-2268285)
chr5 (53-180)||(15442902-15443029)
chr5 (53-180)||(16968968-16969095)
chr5 (53-180)||(17964652-17964779)
chr5 (53-180)||(18705526-18705653)
chr5 (53-180)||(32792366-32792493)
chr5 (49-107)||(32780865-32780923)
chr5 (53-164)||(8343328-8343439)
chr5 (53-108)||(27858391-27858446)
chr5 (53-91)||(8618684-8618722)
chr5 (48-105)||(8619451-8619508)
chr5 (50-106)||(25435196-25435252)
chr5 (52-104)||(32779885-32779937)
chr5 (53-108)||(9176961-9177016)
chr5 (53-108)||(13198239-13198294)
chr5 (53-108)||(21013120-21013175)
chr5 (119-180)||(5950522-5950583)
chr5 (47-108)||(23592807-23592868)
chr5 (48-104)||(974185-974241)
chr5 (52-104)||(3578001-3578053)
chr5 (48-108)||(13197907-13197967)
chr5 (49-81)||(23359111-23359143)
chr5 (48-104)||(24116592-24116648)
[»] chr6 (26 HSPs)
chr6 (48-180)||(5997191-5997323)
chr6 (53-180)||(9565999-9566126)
chr6 (53-180)||(33243172-33243299)
chr6 (54-176)||(28535526-28535648)
chr6 (47-180)||(2182192-2182325)
chr6 (47-180)||(33360444-33360577)
chr6 (53-180)||(6535662-6535790)
chr6 (53-180)||(2793037-2793164)
chr6 (53-180)||(17203868-17203995)
chr6 (65-180)||(17204145-17204260)
chr6 (53-180)||(21905342-21905469)
chr6 (48-176)||(13218863-13218991)
chr6 (49-180)||(6390196-6390327)
chr6 (49-104)||(17409482-17409537)
chr6 (53-180)||(22695558-22695685)
chr6 (118-180)||(3199346-3199408)
chr6 (53-180)||(10143214-10143340)
chr6 (55-180)||(32219128-32219254)
chr6 (49-106)||(8981216-8981273)
chr6 (48-180)||(605475-605607)
chr6 (53-108)||(1827059-1827114)
chr6 (53-104)||(3199310-3199361)
chr6 (48-104)||(5997552-5997608)
chr6 (50-106)||(8980221-8980277)
chr6 (48-108)||(12395661-12395721)
chr6 (48-108)||(14631085-14631145)
[»] scaffold0302 (1 HSPs)
scaffold0302 (53-180)||(14128-14255)
[»] chr2 (38 HSPs)
chr2 (46-180)||(34825678-34825812)
chr2 (47-180)||(40691567-40691700)
chr2 (50-106)||(41426203-41426259)
chr2 (53-180)||(18478576-18478703)
chr2 (53-180)||(42814239-42814366)
chr2 (38-180)||(430802-430944)
chr2 (54-180)||(14102857-14102983)
chr2 (50-180)||(18906924-18907054)
chr2 (48-106)||(30413806-30413864)
chr2 (53-177)||(970440-970564)
chr2 (48-176)||(18133993-18134121)
chr2 (48-108)||(30415207-30415267)
chr2 (53-177)||(33850456-33850580)
chr2 (53-180)||(4902881-4903008)
chr2 (53-180)||(32504264-32504391)
chr2 (53-180)||(34825967-34826094)
chr2 (52-108)||(2916268-2916324)
chr2 (53-177)||(3963056-3963180)
chr2 (48-108)||(9776969-9777029)
chr2 (49-180)||(42434931-42435063)
chr2 (44-108)||(45002839-45002903)
chr2 (53-108)||(2098620-2098675)
chr2 (53-108)||(18707496-18707551)
chr2 (53-180)||(4902626-4902752)
chr2 (53-180)||(4950024-4950150)
chr2 (47-104)||(16026616-16026673)
chr2 (52-92)||(2915477-2915517)
chr2 (48-104)||(7900258-7900314)
chr2 (47-107)||(14827852-14827912)
chr2 (47-180)||(32654100-32654232)
chr2 (53-104)||(16027599-16027650)
chr2 (53-108)||(16265588-16265643)
chr2 (53-108)||(32927713-32927768)
chr2 (49-104)||(43600585-43600640)
chr2 (46-108)||(12819209-12819271)
chr2 (50-108)||(39060406-39060464)
chr2 (49-106)||(18128777-18128834)
chr2 (48-108)||(41186601-41186661)
[»] chr8 (28 HSPs)
chr8 (47-180)||(26695689-26695822)
chr8 (53-180)||(7050808-7050935)
chr8 (53-180)||(34181416-34181542)
chr8 (47-108)||(45488082-45488143)
chr8 (46-102)||(13101715-13101771)
chr8 (44-108)||(41441408-41441472)
chr8 (69-180)||(10495741-10495852)
chr8 (53-180)||(27696699-27696826)
chr8 (46-108)||(30794803-30794865)
chr8 (47-180)||(7678524-7678657)
chr8 (47-108)||(10837163-10837224)
chr8 (47-104)||(39116619-39116676)
chr8 (48-180)||(37406155-37406287)
chr8 (53-180)||(2056723-2056850)
chr8 (53-108)||(42216611-42216666)
chr8 (47-108)||(2232729-2232790)
chr8 (48-104)||(7889889-7889945)
chr8 (48-80)||(43921747-43921779)
chr8 (53-108)||(2705494-2705549)
chr8 (53-108)||(9855310-9855365)
chr8 (50-180)||(9855589-9855720)
chr8 (53-108)||(17696613-17696668)
chr8 (53-108)||(32923727-32923782)
chr8 (53-107)||(43857466-43857520)
chr8 (53-106)||(4528973-4529026)
chr8 (46-107)||(9177442-9177503)
chr8 (48-104)||(7888731-7888787)
chr8 (48-108)||(19948144-19948204)
[»] chr4 (44 HSPs)
chr4 (47-180)||(13198970-13199103)
chr4 (53-180)||(51892666-51892793)
chr4 (47-180)||(39210539-39210672)
chr4 (47-104)||(55604159-55604216)
chr4 (47-180)||(40147348-40147480)
chr4 (48-106)||(29618619-29618677)
chr4 (48-106)||(40087239-40087297)
chr4 (47-180)||(49263871-49264004)
chr4 (47-180)||(52096563-52096696)
chr4 (53-105)||(55601205-55601257)
chr4 (53-108)||(322001-322056)
chr4 (53-108)||(919181-919236)
chr4 (49-108)||(5340168-5340227)
chr4 (47-106)||(11315481-11315540)
chr4 (53-108)||(15168916-15168971)
chr4 (48-175)||(16335054-16335181)
chr4 (53-108)||(23205702-23205757)
chr4 (53-180)||(41965422-41965549)
chr4 (53-108)||(42496284-42496339)
chr4 (53-180)||(45848556-45848682)
chr4 (53-108)||(46008977-46009032)
chr4 (49-104)||(46264787-46264842)
chr4 (50-105)||(49404225-49404280)
chr4 (47-157)||(45311193-45311303)
chr4 (118-180)||(51716436-51716498)
chr4 (51-180)||(5814058-5814187)
chr4 (52-105)||(19842210-19842263)
chr4 (47-104)||(28692950-28693007)
chr4 (48-164)||(888065-888181)
chr4 (48-180)||(35377942-35378074)
chr4 (48-180)||(47690574-47690706)
chr4 (53-108)||(5337975-5338030)
chr4 (53-108)||(8445012-8445067)
chr4 (53-108)||(10616465-10616520)
chr4 (53-104)||(19842775-19842826)
chr4 (53-108)||(31317582-31317637)
chr4 (53-104)||(43980134-43980185)
chr4 (65-104)||(45226365-45226404)
chr4 (49-104)||(46263684-46263739)
chr4 (65-180)||(51892915-51893030)
chr4 (53-108)||(53940699-53940754)
chr4 (50-108)||(49148167-49148225)
chr4 (49-102)||(32384265-32384318)
chr4 (53-105)||(32384098-32384150)
[»] chr1 (38 HSPs)
chr1 (53-180)||(1342435-1342562)
chr1 (53-180)||(5132614-5132741)
chr1 (53-180)||(38717613-38717740)
chr1 (47-180)||(47647855-47647988)
chr1 (48-180)||(17077324-17077456)
chr1 (53-180)||(45950906-45951033)
chr1 (34-104)||(28418879-28418949)
chr1 (53-107)||(32486862-32486916)
chr1 (49-106)||(8679821-8679878)
chr1 (47-180)||(2730734-2730866)
chr1 (53-180)||(5904816-5904944)
chr1 (56-180)||(25378890-25379014)
chr1 (53-108)||(1366628-1366683)
chr1 (53-164)||(2930964-2931075)
chr1 (49-104)||(3773434-3773489)
chr1 (49-104)||(28419958-28420013)
chr1 (49-104)||(36322353-36322408)
chr1 (53-108)||(39524272-39524327)
chr1 (50-104)||(9359735-9359789)
chr1 (46-104)||(9362849-9362907)
chr1 (49-103)||(51031954-51032008)
chr1 (47-108)||(28486976-28487037)
chr1 (49-106)||(33554836-33554893)
chr1 (48-104)||(3772390-3772446)
chr1 (48-108)||(6782916-6782976)
chr1 (47-175)||(36096987-36097115)
chr1 (53-108)||(36726432-36726487)
chr1 (53-108)||(37351288-37351343)
chr1 (53-108)||(38872864-38872919)
chr1 (51-106)||(43741632-43741687)
chr1 (53-108)||(47672003-47672058)
chr1 (65-180)||(50755943-50756058)
chr1 (48-81)||(15624006-15624039)
chr1 (48-101)||(28838465-28838518)
chr1 (53-98)||(36087657-36087702)
chr1 (47-104)||(45216587-45216644)
chr1 (49-97)||(8680708-8680756)
chr1 (49-81)||(15622176-15622208)
[»] scaffold0025 (2 HSPs)
scaffold0025 (47-104)||(3622-3679)
scaffold0025 (49-104)||(4648-4703)
[»] scaffold0009 (1 HSPs)
scaffold0009 (48-180)||(58702-58834)
[»] scaffold0015 (2 HSPs)
scaffold0015 (49-180)||(49999-50130)
scaffold0015 (53-107)||(49720-49774)
[»] scaffold0170 (1 HSPs)
scaffold0170 (53-108)||(5810-5865)
[»] scaffold0079 (1 HSPs)
scaffold0079 (48-175)||(57679-57806)
[»] scaffold0036 (1 HSPs)
scaffold0036 (53-180)||(17119-17246)
[»] scaffold0044 (2 HSPs)
scaffold0044 (54-108)||(9590-9644)
scaffold0044 (118-180)||(9625-9687)
[»] scaffold0385 (1 HSPs)
scaffold0385 (65-104)||(12983-13022)
[»] scaffold0045 (1 HSPs)
scaffold0045 (53-108)||(35694-35749)
[»] scaffold0275 (1 HSPs)
scaffold0275 (46-108)||(1562-1624)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 47444112 - 47443981
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaa 148  Q
    ||||||||||||| |||||||||||||||||||| |||||||| |||||||||| | |||        ||||||||||| ||||| ||||||||||||||    
T  47444112 aggcttaaatgtgggattagtccctgcactttcacccaattttggcattggtcc-tacacttttttttgtttggctttaatccctgcactttataaaaaa 47444014  T
Q  149 tttggtattagtcccttcgttaactttctgttt 181  Q
    ||||||||| |||||| ||||||||||| ||||    
T  47444013 tttggtattggtccctccgttaactttccgttt 47443981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 31657798 - 31657671
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  31657798 ttaaatgtgtcattggtccctgcactttcatcaaattttagcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 31657699  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  | ||||||||||||    
T  31657698 gtattggtccctctgctaactttctgtt 31657671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 18046041 - 18046102
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  18046041 ttaggcttaaatatgtgattagtccctgcactttcatcaaattttggcattggtccctgcac 18046102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 6607639 - 6607766
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||        ||||||| ||  ||||| |||||| ||||||  |||    
T  6607639 ttaaatgtgtcattggtccctgcactttcatccgattttggcattggtccctgcacttttttttgtttggcattgatccctgcactttgtaaaaatattg 6607738  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  6607739 gtattggtccctctgttaactttctgtt 6607766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 6626577 - 6626450
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||        ||||||| || ||| || |||||| ||||||  |||    
T  6626577 ttaaatgtgtcattggtccctgcactttcatccgattttggcattggtccctgcacttttttttgtttggcattggtcactgcactttgtaaaaatattg 6626478  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  6626477 gtattggtccctctgttaactttctgtt 6626450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 31849812 - 31849680
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || ||||||  ||||| ||||||    
T  31849812 taggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgtactttgtaaaaa 31849713  T
Q  148 atttggtattagtcccttcgttaactttctgtt 180  Q
      |||||||| ||||||  ||||||||||||||    
T  31849712 tattggtattggtccctctgttaactttctgtt 31849680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 38816235 - 38816367
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||||||| ||| |||||||||||||||||  ||||| | ||||||||||||||        ||||||| ||||||||| |||||| ||||||    
T  38816235 taggtttaaatgtgtcattggtccctgcactttcatcagattttggaattggtccctgcacttttttttgtttggcattagtccctgcactttgtaaaaa 38816334  T
Q  148 atttggtattagtcccttcgttaactttctgtt 180  Q
      |||||||| |||| |  ||||||||||||||    
T  38816335 tattggtattggtccatctgttaactttctgtt 38816367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 39102797 - 39102929
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||| ||||||        ||||||| || |||||| |||||| ||||||    
T  39102797 taggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtctctgcacttttttttgtttggcattggtccctgcactttgtaaaaa 39102896  T
Q  148 atttggtattagtcccttcgttaactttctgtt 180  Q
      |||||||| ||||||  ||||||||||||||    
T  39102897 tattggtattggtccctctgttaactttctgtt 39102929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 24000331 - 24000208
Alignment:
Q  54 taaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttgg 153  Q
    ||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  ||||    
T  24000331 taaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattgg 24000232  T
Q  154 tattagtcccttcgttaactttct 177  Q
    |||| ||||||  |||||||||||    
T  24000231 tattggtccctctgttaactttct 24000208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 24164394 - 24164267
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||| ||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  24164394 ttaaatgtgtcattggtccctacactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 24164295  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  24164294 gtattggtccctctgttaactttctgtt 24164267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 47913531 - 47913404
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || ||| || |||||| ||||||  |||    
T  47913531 ttaaatgtgttattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtctctgcactttgtaaaaatattg 47913432  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  47913431 gtattggtccctctgttaactttctgtt 47913404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 19276637 - 19276769
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||||||| ||| |||||||||||||||||  |||||   ||||||||||||||        ||||||| || |||||| |||||| ||||||    
T  19276637 taggtttaaatgtgtcattggtccctgcactttcatcagattttgaaattggtccctgcactttattttgtttggcattggtccctgcactttgtaaaaa 19276736  T
Q  148 atttggtattagtcccttcgttaactttctgtt 180  Q
      |||||||| ||||||  ||||||||||||||    
T  19276737 tattggtattggtccctctgttaactttctgtt 19276769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 46972620 - 46972564
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||||||| |||||||||||||||||| |||||||| | ||||||||||    
T  46972620 taggcttaaatgtgtgtttagtccctgcactttcacccaattttggtattggtccct 46972564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 21766920 - 21766794
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| ||||||| |||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  21766920 ttaaatgtgtcattggtccctgtactttcatcagattttggcattggtccctgcac-tttttttgtttggcattggtccctgcactttgtaaaaatattg 21766822  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  21766821 gtattggtccctctgttaactttctgtt 21766794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 47443178 - 47443224
Alignment:
Q  129 tccctacactttataaaaaatttggtattagtcccttcgttaacttt 175  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  47443178 tccctacactttataaaaaatttggtattaatccctccgttaacttt 47443224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 8952414 - 8952545
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| ||||| |||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| |||||    
T  8952414 ttaggtttaaacgtgtcattggtccctgcactttcatcagatttt-gcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaa 8952512  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
     | |||||||| ||||||  ||||||||||||||    
T  8952513 ta-ttggtattggtccctctgttaactttctgtt 8952545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 39140773 - 39140720
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtcc 102  Q
    ||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||    
T  39140773 aggcttaaatgtgtgtttagtccctgcactttcgtccagttttggcattggtcc 39140720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 42665131 - 42665259
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| ||||||||||| |||||||||||||||||  ||| |||| |||||||||||| | |        ||||||| ||||||||| |||||| |||||     
T  42665131 taggtttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccctacgcttttttttgtttggcattagtccctgcactttctaaaac 42665230  T
Q  148 atttggtattagtcccttcgttaactttc 176  Q
     |||||  ||||||| | |||||||||||    
T  42665231 ttttggctttagtccttccgttaactttc 42665259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 3312357 - 3312306
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggt 100  Q
    ||||||||||||||| ||||||||||||||||| |||| |||| ||||||||    
T  3312357 aggcttaaatgtgtgtttagtccctgcactttcgtccagttttggcattggt 3312306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 10336528 - 10336401
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||| ||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  10336528 ttaaatgtgtcattggtccctgcactttcatcagattttggcattagtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 10336429  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    |||||  || ||  ||||||||||||||    
T  10336428 gtattgatctctctgttaactttctgtt 10336401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 19587669 - 19587723
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    |||||||||||||  || ||||||||||||||||| |||||| ||||||||||||||    
T  19587669 ggcttaaatgtgt--ttggtccctgcactttcatctaattttggcattggtccctgc 19587723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 26175007 - 26174874
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac-nnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    |||| |||||||||| ||| |||||||||||||||||  ||||| |||||||||| |||||         ||||||| ||  ||||| |||||| |||||    
T  26175007 taggtttaaatgtgtcatttgtccctgcactttcatcagattttggcattggtccttgcactttttttttgtttggcattgatccctgcactttgtaaaa 26174908  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||||||| ||||||  ||||||||||||||    
T  26174907 atattggtattggtccctctgttaactttctgtt 26174874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 44141406 - 44141463
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||| |||  ||||||||||||||||||||  ||||| ||||||||||||    
T  44141406 ttaggcttaaatatgtctttagtccctgcactttcatcagattttggcattggtccct 44141463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 1795443 - 1795498
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| ||||||||||||||||| |||||| | |||||||| |||||    
T  1795443 ttaaatgtgtcattggtccctgcactttcatcaaattttggaattggtccatgcac 1795498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 17356601 - 17356660
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgca 107  Q
    |||| |||||||||| ||| |||||| |||||||||| ||||||  ||||||||||||||    
T  17356601 taggtttaaatgtgtcattggtccctacactttcatcaaattttgacattggtccctgca 17356660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 21276338 - 21276393
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||| | ||| ||||||||||||||||| |||||| ||||||||| ||||||    
T  21276338 ttaaatgtatcattggtccctgcactttcatcaaattttggcattggtctctgcac 21276393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 21438651 - 21438596
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| |||  ||||||||||||||||  ||||| ||||||||||||||||    
T  21438651 ttaaatgtgtcattgatccctgcactttcatcagattttggcattggtccctgcac 21438596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 35193321 - 35193376
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| |||  ||||||||||||||||  ||||| ||||||||||||||||    
T  35193321 ttaaatgtgtcattgatccctgcactttcatcggattttggcattggtccctgcac 35193376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 38567878 - 38567823
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| | | |||||||||||||||||  ||||| ||||||||||||||||    
T  38567878 ttaaatgtgtcactggtccctgcactttcatcagattttggcattggtccctgcac 38567823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 41320374 - 41320425
Alignment:
Q  57 atgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  41320374 atgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 41320425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 46294610 - 46294559
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||| |||||||||||||||||  ||| |||| ||||||||||||    
T  46294610 ttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccct 46294559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 48863555 - 48863500
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||| ||||||||||||  ||||| ||||||||||||||||    
T  48863555 ttaaatgtgtcattggtccttgcactttcatcagattttggcattggtccctgcac 48863500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 36965528 - 36965582
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||||| |||||||||||||||||  ||| |||| |||||| |||||    
T  36965528 ggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattgatccct 36965582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 42666186 - 42666152
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttc 81  Q
    ||||||||||||||||| |||||||||||||||||    
T  42666186 ttaggcttaaatgtgtgtttagtccctgcactttc 42666152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 46293560 - 46293614
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||||| |||||||||||||||||  ||| |||| |||||| |||||    
T  46293560 ggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattgatccct 46293614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 47443395 - 47443433
Alignment:
Q  359 cgagacatcaccactaccatc-aatggttaacaccatat 396  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  47443395 cgagacatcaccactaccatcaaatggttaacaccatat 47443433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 21276680 - 21276623
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||| |||  |||||||||||||||||||   ||||| ||||||||||||    
T  21276680 ttaggcttaaatatgtctttagtccctgcactttcataagattttggcattggtccct 21276623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 39139727 - 39139784
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||||| |||||||||||| ||||  ||| |||| | ||||||||||    
T  39139727 ttaggcttaaatgtgtgtttagtccctgcaatttcgcccagttttggtattggtccct 39139784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 39384718 - 39384770
Alignment:
Q  56 aatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    ||||||| ||| |||||||||||||||||  ||||| ||||| ||||||||||    
T  39384718 aatgtgtcattggtccctgcactttcatcagattttggcattagtccctgcac 39384770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 40037054 - 40036927
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| ||||||||| ||||||| |||||| ||||||||||||||||        ||||||| || ||||||||||||| ||||||  |||    
T  40037054 ttaaatgtgtcattggtccctgcattttcatcaaattttggcattggtccctgcacttttttttgtttggcattggtccctacactttgtaaaaatattg 40036955  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  40036954 gtattggtccctctgttaactttctgtt 40036927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 51754313 - 51754180
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| |||||    
T  51754313 ttaggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaa 51754214  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||||||| ||||||  ||||||||||||||    
T  51754213 atattggtattggtccctctgttaactttctgtt 51754180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 30427392 - 30427507
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||| || ||||||||||||||||||||||||||| || |||||||||||||        ||||||| || |||||| |||||||||||     
T  30427392 ttaggtttaaatgtttgtttagtccctgcactttcatccaattttggctttggtccctgcacttttttttgtttggcattggtccctgcactttataaat 30427491  T
Q  147 aatttggtattagtcc 162  Q
      ||||| ||||||||    
T  30427492 tttttggcattagtcc 30427507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 47358153 - 47358280
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| |||||||||||||||         ||||||| || |||||| |||||| ||||||  |||    
T  47358153 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcaattttttttgtttggcattggtccctgcactttgtaaaaatattg 47358252  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  47358253 gtattggtccctctgttaactttctgtt 47358280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 21441348 - 21441220
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnn-gtttggctttagtccctacactttataaaaaattt 151  Q
    |||||||||| | | |||||||||||||||||  ||||| ||||||||||||||||         ||||||| || ||||||||||||| ||||||  ||    
T  21441348 ttaaatgtgtcactggtccctgcactttcatcagattttggcattggtccctgcactttttttttgtttggcattggtccctacactttgtaaaaatatt 21441249  T
Q  152 ggtattagtcccttcgttaactttctgtt 180  Q
    |||||| ||||||  ||||||||||||||    
T  21441248 ggtatttgtccctctgttaactttctgtt 21441220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 44398286 - 44398162
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| |||||| |||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  44398286 ttaaatgtgtaattggtccctgcactttcatcagattttggcattgatccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 44398187  T
Q  153 gtattagtcccttcgttaactttct 177  Q
    ||||| ||||||  |||||||||||    
T  44398186 gtattggtccctctgttaactttct 44398162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 47982366 - 47982492
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||| | ||| ||||||||||||||||| |||||| | |||| |||||||||        ||||||| || ||||||||||||| ||||||  |||    
T  47982366 ttaaatgtatcattggtccctgcactttcatcaaattttggtattgatccctgcacttttttt-gtttggcattggtccctacactttgtaaaaatattg 47982464  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  47982465 gtattggtccctctgttaactttctgtt 47982492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 47991653 - 47991779
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||| | ||| ||||||||||||||||| |||||| | |||| |||||||||        ||||||| || ||||||||||||| ||||||  |||    
T  47991653 ttaaatgtatcattggtccctgcactttcatcaaattttggtattgatccctgcacttttttt-gtttggcattggtccctacactttgtaaaaatattg 47991751  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  47991752 gtattggtccctctgttaactttctgtt 47991779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 48000940 - 48001066
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||| | ||| ||||||||||||||||| |||||| | |||| |||||||||        ||||||| || ||||||||||||| ||||||  |||    
T  48000940 ttaaatgtatcattggtccctgcactttcatcaaattttggtattgatccctgcacttttttt-gtttggcattggtccctacactttgtaaaaatattg 48001038  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  48001039 gtattggtccctctgttaactttctgtt 48001066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 48010227 - 48010353
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||| | ||| ||||||||||||||||| |||||| | |||| |||||||||        ||||||| || ||||||||||||| ||||||  |||    
T  48010227 ttaaatgtatcattggtccctgcactttcatcaaattttggtattgatccctgcacttttttt-gtttggcattggtccctacactttgtaaaaatattg 48010325  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  48010326 gtattggtccctctgttaactttctgtt 48010353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 52957881 - 52957922
Alignment:
Q  8 agagatgaaaggggtagttttcattacatataatatagatta 49  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  52957881 agagctgaaaggggtagttttcattacatataatatagatta 52957922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 2893031 - 2892903
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    ||||||||||| |||||||||||||||||  ||| |||| |||||||||||| | |        ||||||| ||||||||| |||||| |||||  ||||    
T  2893031 ttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccctacgcttttttttgtttggcattagtccctgcactttctaaaacttttg 2892932  T
Q  153 gtattagtcccttcgttaactttctgttt 181  Q
    |  ||||||| | ||||||||||| ||||    
T  2892931 gctttagtccttccgttaactttccgttt 2892903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 16222469 - 16222604
Alignment:
Q  44 agattaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttata 143  Q
    |||| |||||||||| ||   |||||||||||||||||||| |||||| |||||||||||| |||        ||||||  || |||||| |||||| ||    
T  16222469 agataaggcttaaatatgcctttagtccctgcactttcatcaaattttggcattggtccctacac-tttttttgtttggaattggtccctgcactttgta 16222567  T
Q  144 aaaaatttggtattagtcccttcgttaactttctgtt 180  Q
    ||||  |||||||| ||||||  ||||||||||||||    
T  16222568 aaaatattggtattggtccctctgttaactttctgtt 16222604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 46015536 - 46015497
Alignment:
Q  118 tttggctttagtccctacactttataaaaaatttggtatt 157  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  46015536 tttggctttagtccctgcactttataaaaaatttggtatt 46015497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 51761178 - 51761051
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||| ||||||||||        ||||||| |  |||||| |||||| ||||||  |||    
T  51761178 ttaaatgtgtcattggtccctgcactttcatcatattttggcattagtccctgcacttttttttgtttggcatcggtccctgcactttgtaaaaatattg 51761079  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||   |||||||||||||    
T  51761078 gtattggtccctctattaactttctgtt 51761051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 2891978 - 2892104
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaat 149  Q
    |||||||||||||| |||||||||||||||||  ||| |||| |||||| ||||| | |        ||||||| || ||||||||||||| |||||  |    
T  2891978 ggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattgatccctacgcttttttttgtttggcattggtccctacactttctaaaactt 2892077  T
Q  150 ttggtattagtcccttcgttaactttc 176  Q
    ||||  ||||||| | |||||||||||    
T  2892078 ttggctttagtccttccgttaactttc 2892104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 34682282 - 34682411
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac--nnnnnnnngtttggctttagtccctacactttataaaaaatt 150  Q
    |||||||||| ||| |||||||||||||||||  ||||| | ||||||||||||||          ||||||| || |||||| |||||| ||||||  |    
T  34682282 ttaaatgtgtcattggtccctgcactttcatcagattttggtattggtccctgcacttttttttttgtttggcattggtccctgcactttgtaaaaatat 34682381  T
Q  151 tggtattagtcccttcgttaactttctgtt 180  Q
    ||||||| ||||||  ||||||||||||||    
T  34682382 tggtattggtccctctgttaactttctgtt 34682411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 54036307 - 54036253
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||||| |||||||||||||||||  ||| |||| ||||||||||||    
T  54036307 ggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccct 54036253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 29352402 - 29352462
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||| |||||||||| ||| ||| |||||||||||||  ||||| ||||||||||||||||    
T  29352402 taggtttaaatgtgtcattggtctctgcactttcatcagattttggcattggtccctgcac 29352462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 3017582 - 3017527
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| ||||||||| |||||||  ||||| ||||||||||||||||    
T  3017582 ttaaatgtgtcattggtccctgcattttcatcagattttggcattggtccctgcac 3017527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 16222887 - 16222832
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||| ||||||||||  ||||| ||||||||||||||||    
T  16222887 ttaaatgtgtcattggtccctacactttcatcagattttggcattggtccctgcac 16222832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 19987834 - 19987889
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||| |||  ||||||||||||||||||||  ||||| ||||||||||||    
T  19987834 aggcttaaatatgtctttagtccctgcactttcatcagattttggcattggtccct 19987889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 23461241 - 23461186
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||| ||||||||||  ||||| ||||||||||||||||    
T  23461241 ttaaatgtgtcattggtccctacactttcatcagattttggcattggtccctgcac 23461186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 35565040 - 35565099
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgca 107  Q
    |||| |||||||||| ||| |||||| ||||||||||  ||||| |||||||||||||||    
T  35565040 taggtttaaatgtgtcattggtccctacactttcatcagattttggcattggtccctgca 35565099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 40393463 - 40393517
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| |||| |||||||||||||||| ||||||  |||||||||||||||    
T  40393463 ttaaatgtgtcatta-tccctgcactttcatcaaattttgacattggtccctgcac 40393517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 40791153 - 40791090
Alignment:
Q  117 gtttggctttagtccctacactttataaaaaatttggtattagtcccttcgttaactttctgtt 180  Q
    ||||||| || |||||| |||||||||||||  |||||||| ||||||  ||||||||||||||    
T  40791153 gtttggcattggtccctgcactttataaaaatattggtattggtccctctgttaactttctgtt 40791090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 44638674 - 44638623
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||    
T  44638674 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccct 44638623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 52836632 - 52836687
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||||  ||||||||||||||    
T  52836632 ttaaatgtgtcattggtccctgcactttcatcagattttaatattggtccctgcac 52836687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 41496124 - 41496178
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||||| |||||||||||||||||  ||| |||| |||||| |||||    
T  41496124 ggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattgatccct 41496178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 51885830 - 51885884
Alignment:
Q  52 cttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    |||||||||||| || ||||||||||||| | |||||||| |||||||| |||||    
T  51885830 cttaaatgtgtgtttggtccctgcactttgacccaattttggcattggttcctgc 51885884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 55328848 - 55328800
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtc 101  Q
    |||||||||| |||||||||||||||||||||  |||||  ||||||||    
T  55328848 ttaaatgtgtcattagtccctgcactttcatcagattttgacattggtc 55328800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 20166483 - 20166349
Alignment:
Q  46 attaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaa 145  Q
    |||||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||    
T  20166483 attaggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaa 20166384  T
Q  146 aaatttggtattagtcccttcgttaactttctgtt 180  Q
    ||  |||||||| ||||||  ||||||||||||||    
T  20166383 aatattggtattggtccctctgttaactttctgtt 20166349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 26408635 - 26408767
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||    
T  26408635 taggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaa 26408734  T
Q  148 atttggtattagtcccttcgttaactttctgtt 180  Q
      |||||||| ||||||  ||||||||||||||    
T  26408735 tattggtattggtccctctgttaactttctgtt 26408767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 5907263 - 5907389
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  5907263 ttaaatgtgtcattggtccctgcactttcatcaaattttggcattggtccctgcac-tttttttgtttggcattggtccctgcactttgtaaaaatattg 5907361  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  5907362 gtattggtccctctgttaactttctgtt 5907389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 25945332 - 25945459
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||  ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  25945332 ttaaatgtgacattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 25945431  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  25945432 gtattggtccctctgttaactttctgtt 25945459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 39412529 - 39412402
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || ||||||  ||||| ||||||  |||    
T  39412529 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcatttgtccctgtactttgtaaaaatattg 39412430  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  39412429 gtattggtccctctgttaactttctgtt 39412402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 973823 - 973957
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac-nnnnnnnngtttggctttagtccctacactttataaa 145  Q
    ||||| |||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||||         ||||||| || |||||| |||||| ||||    
T  973823 ttaggtttaaatgtgtcattggtccctgcactttcatcaaattttggcattggtccctgcactttttttttgtttggcattggtccctgcactttgtaaa 973922  T
Q  146 aaatttggtattagtcccttcgttaactttctgtt 180  Q
    ||  |||||||| ||||||  | ||||||||||||    
T  973923 aatattggtattggtccctctgctaactttctgtt 973957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 23592476 - 23592610
Alignment:
Q  46 attaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaa 145  Q
    |||||| |||||||||| ||| |||||||||||||||||  |||||   ||||||||||||||        ||||||| || |||||| |||||| ||||    
T  23592476 attaggtttaaatgtgtcattggtccctgcactttcatcagattttgatattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaa 23592575  T
Q  146 aaatttggtattagtcccttcgttaactttctgtt 180  Q
    ||  |||||||| ||||||  ||||||||||||||    
T  23592576 aatattggtattggtccctctgttaactttctgtt 23592610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 2268230 - 2268285
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| |||||||||||||||||||||  ||||| ||||||||||||||||    
T  2268230 ttaaatgtgtcattagtccctgcactttcatcagattttggcattggtccctgcac 2268285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 15443029 - 15442902
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| |||||||||| |||||        ||||||| || |||||| |||||| ||||||  |||    
T  15443029 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccttgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 15442930  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| |||| |  ||||||||||||||    
T  15442929 gtattggtccttctgttaactttctgtt 15442902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 16969095 - 16968968
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| |||  ||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  16969095 ttaaatgtgtcattgatccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 16968996  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    |||||  |||||  ||||||||||||||    
T  16968995 gtattgatccctctgttaactttctgtt 16968968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 17964652 - 17964779
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| || ||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| || |||  |||    
T  17964652 ttaaatgtgttattggttcctgcactttcatcagatttttgcattggtccctgcacttttttttgtttggcattggtccctgcactttgtataaatattg 17964751  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  17964752 gtattggtccctctgttaactttctgtt 17964779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 18705526 - 18705653
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| | ||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  18705526 ttaaatgtgtcattggtccctgcactttcatcagattttggtattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 18705625  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    |||||  |||||  ||||||||||||||    
T  18705626 gtattgatccctctgttaactttctgtt 18705653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 32792366 - 32792493
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| ||||||||||||| ||| |||||| ||||||||| ||||||        ||||||| || |||||| |||||| ||||||  |||    
T  32792366 ttaaatgtgtcattggtccctgcacttttatcaaattttggcattggtctctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 32792465  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||| ||  ||||||||||||||    
T  32792466 gtattggtctctctgttaactttctgtt 32792493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 32780865 - 32780923
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgca 107  Q
    ||||||||||||||| || ||||||||||||||| || ||||| |||||||||||||||    
T  32780865 aggcttaaatgtgtgtttggtccctgcactttcaccccattttggcattggtccctgca 32780923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 8343439 - 8343328
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| |||||||| |||||||        ||||||| || |||||| |||||| ||||||  |||    
T  8343439 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggttcctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 8343340  T
Q  153 gtattagtccct 164  Q
    ||||| ||||||    
T  8343339 gtattggtccct 8343328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 27858391 - 27858446
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  27858391 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 27858446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 8618684 - 8618722
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaatttt 91  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  8618684 ttaaatgtgtgtttagtccctgcactttcatccaatttt 8618722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 8619508 - 8619451
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctg 105  Q
    |||| ||||||||| | |||||||||||||||||| |||||||| | |||||||||||    
T  8619508 taggtttaaatgtgcgtttagtccctgcactttcacccaattttggtattggtccctg 8619451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 25435252 - 25435196
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    |||||||||||||| |||||||||||||||||  ||| ||||  |||||||||||||    
T  25435252 ggcttaaatgtgtgtttagtccctgcactttcgcccagttttgacattggtccctgc 25435196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 32779885 - 32779937
Alignment:
Q  52 cttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||| || ||| |||||||||||| |||||||||| ||||||||||||    
T  32779885 cttaaatgtatgtttaatccctgcacttttatccaattttggcattggtccct 32779937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 9176961 - 9177016
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| | ||||||||||||||    
T  9176961 ttaaatgtgtcattggtccctgcactttcatcagattttggtattggtccctgcac 9177016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 13198294 - 13198239
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||| ||||||||||||  ||||| ||||||||||||||||    
T  13198294 ttaaatgtgttattggtccttgcactttcatcagattttggcattggtccctgcac 13198239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 21013120 - 21013175
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    ||||||||||| |||||||||||||||| |  ||||||| || |||||||||||||    
T  21013120 ttaaatgtgtgtttagtccctgcacttttactcaattttggctttggtccctgcac 21013175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 5950522 - 5950583
Alignment:
Q  119 ttggctttagtccctacactttataaaaaatttggtattagtcccttcgttaactttctgtt 180  Q
    ||||| || ||||||||||||||||||||  |||||||  ||||||  ||||||||||||||    
T  5950522 ttggcattggtccctacactttataaaaatattggtatcggtccctctgttaactttctgtt 5950583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 23592868 - 23592807
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    ||||| ||||| |||| ||| |||||||||||||||||  |||||  |||||||||||||||    
T  23592868 ttaggtttaaacgtgtcattggtccctgcactttcatcagattttgacattggtccctgcac 23592807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 974241 - 974185
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||| |||  ||||||||||||||||||||  ||||| | ||||||||||    
T  974241 taggcttaaatatgtctttagtccctgcactttcatcagattttggtattggtccct 974185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 3578001 - 3578053
Alignment:
Q  52 cttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||| |||  ||||||||||||||||||||  ||||| ||||||||||||    
T  3578001 cttaaatatgtctttagtccctgcactttcatcagattttggcattggtccct 3578053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 13197907 - 13197967
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||| |||||||||| ||| |||| ||||||||||||  ||||| |||||| |||||||||    
T  13197907 taggattaaatgtgtcattggtccatgcactttcatcagattttggcattgatccctgcac 13197967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 23359143 - 23359111
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttc 81  Q
    ||||||||||||||| |||||||||||||||||    
T  23359143 aggcttaaatgtgtgtttagtccctgcactttc 23359111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 24116648 - 24116592
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||| ||||||||||| |||||||||||||||||  ||| ||||  |||||||||||    
T  24116648 taggtttaaatgtgtgtttagtccctgcactttcgcccagttttgacattggtccct 24116592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 5997191 - 5997323
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||| ||||||||||||| ||        ||||||| || |||||| |||||| ||||||    
T  5997191 taggtttaaatgtgtcattggtccctgcactttcatcaaattttggcattggtccctgtacttttttttgtttggcattggtccctgcactttgtaaaaa 5997290  T
Q  148 atttggtattagtcccttcgttaactttctgtt 180  Q
      |||||||||||||||  | ||||||||||||    
T  5997291 tattggtattagtccctctgctaactttctgtt 5997323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 9565999 - 9566126
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  9565999 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 9566098  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  9566099 gtattggtccctctgttaactttctgtt 9566126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 33243172 - 33243299
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| ||||||||| |||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  33243172 ttaaatgtgtcattggtccctgcattttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 33243271  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  33243272 gtattggtccctctgttaactttctgtt 33243299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 28535526 - 28535648
Alignment:
Q  54 taaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttgg 153  Q
    |||||||||| ||||||||||||||||| |||| |||| |||||||||||||| |        ||||||| || |||||| |||||| |||||  |||||    
T  28535526 taaatgtgtgtttagtccctgcactttcgtccagttttggcattggtccctgcgcttttttttgtttggcattggtccctgcactttctaaaacttttgg 28535625  T
Q  154 tattagtcccttcgttaactttc 176  Q
    | ||||||| | |||||||||||    
T  28535626 ttttagtccttccgttaactttc 28535648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 2182325 - 2182192
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    |||||||||||||||| ||| ||||||||| |||||||  ||||| | |||| |||||||||        |||||| |||||||||| |||||| |||||    
T  2182325 ttaggcttaaatgtgtcattggtccctgcaatttcatcatattttgggattgatccctgcacttttttttgtttggttttagtccctgcactttgtaaaa 2182226  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||  ||| ||||||| ||||||||||||||    
T  2182225 atattgacattggtccctttgttaactttctgtt 2182192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 33360444 - 33360577
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||  || |||||| |||||| |||||    
T  33360444 ttaggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggtattggtccctgcactttgtaaaa 33360543  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||||||| || |||  ||||||||||||||    
T  33360544 atattggtattggtacctctgttaactttctgtt 33360577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 6535790 - 6535662
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgca-cnnnnnnnngtttggctttagtccctacactttataaaaaattt 151  Q
    |||||||||| ||| |||||||||||||||||  ||||| |||||||||||||||          ||||||| || |||||| |||||| ||||||  ||    
T  6535790 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcattttttttttgtttggcattggtccctgcactttgtaaaaatatt 6535691  T
Q  152 ggtattagtcccttcgttaactttctgtt 180  Q
    |||||| ||||||| ||||||||||||||    
T  6535690 ggtattggtccctttgttaactttctgtt 6535662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 2793037 - 2793164
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||| | |||||| ||||||  |||    
T  2793037 ttaaatgtgtcattggtccctgcactttcatcatattttggcattggtccctgcacttttttttgtttggcattggtccttgcactttgtaaaaatattg 2793136  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  | ||||||||||||    
T  2793137 gtattggtccctctgctaactttctgtt 2793164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 17203868 - 17203995
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| | ||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  17203868 ttaaatgtgtcattggtccctgcactttcatcagattttggtattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 17203967  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||| ||||||||    
T  17203968 gtattggtccctctgttaattttctgtt 17203995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 17204260 - 17204145
Alignment:
Q  65 ttagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttggtattagtccct 164  Q
    ||||||||||||||||||||  ||||||||||| |||||| |||        ||||||  || ||||||||||||| ||||||  |||||||| ||||||    
T  17204260 ttagtccctgcactttcatcagattttagcattcgtccctacactttattttgtttggaattggtccctacactttgtaaaaatattggtattggtccct 17204161  T
Q  165 tcgttaactttctgtt 180  Q
      ||||||||||||||    
T  17204160 ctgttaactttctgtt 17204145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 21905469 - 21905342
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  |||||  |||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  21905469 ttaaatgtgtcattggtccctgcactttcatcagattttgccattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 21905370  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    |||||  |||||  ||||||||||||||    
T  21905369 gtattgatccctctgttaactttctgtt 21905342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 13218863 - 13218991
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| ||||||||||| |||||||||||||||||  ||| |||| |||||||||||| | |        ||||||| ||||||||| |||||| |||||     
T  13218863 taggtttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccctacgcttttttttgtttggcattagtccctgcactttctaaaac 13218962  T
Q  148 atttggtattagtcccttcgttaactttc 176  Q
     |||||  ||||||| | |||||||||||    
T  13218963 ttttggctttagtccttccgttaactttc 13218991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 180
Target Start/End: Complemental strand, 6390327 - 6390196
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaa 148  Q
    |||||||||| |||  ||||||||||||||||||||  ||||| |||||||||||| |||        ||||||  || |||||| |||||| ||||||     
T  6390327 aggcttaaatatgtctttagtccctgcactttcatcagattttggcattggtccctacacttttttttgtttggaattggtccctgcactttgtaaaaat 6390228  T
Q  149 tttggtattagtcccttcgttaactttctgtt 180  Q
     ||||||||  |||||| |||||| |||||||    
T  6390227 attggtattgatccctttgttaaccttctgtt 6390196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 17409537 - 17409482
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||| |||||||||||||||||  ||| |||| ||||||||||||    
T  17409537 aggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccct 17409482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 22695558 - 22695685
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  |||||  |||||||||||||||        ||||||| || |||| | |||||| ||||||  |||    
T  22695558 ttaaatgtgtcattggtccctgcactttcatcagattttgacattggtccctgcacttttttttgtttggcattggtccttgcactttgtaaaaatattg 22695657  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| || |||  ||||||||||||||    
T  22695658 gtattggttcctctgttaactttctgtt 22695685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 3199346 - 3199408
Alignment:
Q  118 tttggctttagtccctacactttataaaaaatttggtattagtcccttcgttaactttctgtt 180  Q
    |||||| || ||||||||||||| ||||||  |||||||||||||||  ||||||||||||||    
T  3199346 tttggcattggtccctacactttgtaaaaatattggtattagtccctctgttaactttctgtt 3199408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 10143214 - 10143340
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||| | ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  10143214 ttaaatgtctcattggtccctgcactttcatcagattttggcattggtccctgcac-tttttttgtttggcattggtccctgcactttgtaaaaatattg 10143312  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| || |||  ||||||||||||||    
T  10143313 gtattggttcctctgttaactttctgtt 10143340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 180
Target Start/End: Complemental strand, 32219254 - 32219128
Alignment:
Q  55 aaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttggt 154  Q
    |||||||| ||| |||| ||||||||||||  ||||| ||||||||||||||||        ||||||  || |||||| |||||| ||||||  |||||    
T  32219254 aaatgtgtcattggtccttgcactttcatcagattttggcattggtccctgcacttttttttgtttggtattggtccctgcactttgtaaaaatattggt 32219155  T
Q  155 attagtcccttc-gttaactttctgtt 180  Q
    ||| ||||| || ||||||||||||||    
T  32219154 attggtcccctctgttaactttctgtt 32219128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 8981273 - 8981216
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    ||||||||||||||| |||||||||||||||||  | | |||| ||||||||||||||    
T  8981273 aggcttaaatgtgtgtttagtccctgcactttcgcctagttttggcattggtccctgc 8981216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 605475 - 605607
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||||||| ||| |||| ||||||| ||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| || |||    
T  605475 taggtttaaatgtgtcattggtccttgcacttccatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtataaa 605574  T
Q  148 atttggtattagtcccttcgttaactttctgtt 180  Q
      ||| |||| ||||||  ||||||||||||||    
T  605575 tattgatattggtccctctgttaactttctgtt 605607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 1827059 - 1827114
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| ||| |||||||||||||  ||||| ||||||||||||||||    
T  1827059 ttaaatgtgtcattggtctctgcactttcatcagattttggcattggtccctgcac 1827114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 3199310 - 3199361
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||    
T  3199310 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccct 3199361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 5997608 - 5997552
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||| ||   ||||||||||||||||||||  ||||| ||||||||||||    
T  5997608 taggcttaaatatgcctttagtccctgcactttcatcagattttggcattggtccct 5997552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 8980221 - 8980277
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    |||||||||||||| ||||||||| |||||||   || |||| ||||||||||||||    
T  8980221 ggcttaaatgtgtgtttagtccctacactttcgctcagttttggcattggtccctgc 8980277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 12395661 - 12395721
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||| |||||||||| ||| ||||||||||||| |||  ||||| |||||||||| |||||    
T  12395661 taggtttaaatgtgtcattggtccctgcacttttatcagattttggcattggtccatgcac 12395721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 14631145 - 14631085
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||| |||||||||| ||| |||||||||||||||||  ||||| |||||| || ||||||    
T  14631145 taggtttaaatgtgtcattggtccctgcactttcatcagattttggcattgatctctgcac 14631085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 14128 - 14255
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  14128 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 14227  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  14228 gtattggtccctctgttaactttctgtt 14255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 34825678 - 34825812
Alignment:
Q  46 attaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaa 145  Q
    ||||||||||||| |||  |||||| |||||||||||||  ||||| |||||||||||| |||        ||||||  || ||||||||||||||||||    
T  34825678 attaggcttaaatatgtctttagtctctgcactttcatcatattttggcattggtccctacactttattttgtttggaattggtccctacactttataaa 34825777  T
Q  146 aaatttggtattagtcccttcgttaactttctgtt 180  Q
    ||  |||||||| ||||||  ||||||||||||||    
T  34825778 aatattggtattggtccctctgttaactttctgtt 34825812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 40691700 - 40691567
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||| | |||||| |||||    
T  40691700 ttaggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccatgcactttgtaaaa 40691601  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||||||| ||||||  ||||||||||||||    
T  40691600 atattggtattggtccctctgttaactttctgtt 40691567  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 41426203 - 41426259
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  41426203 ggcttaaatgtgtgtttagtccttgcactttcgtccaattttagcattggtccctgc 41426259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 18478703 - 18478576
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| ||||||| |||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  18478703 ttaaatgtgtcattggtccctggactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 18478604  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  18478603 gtattggtccctctgttaactttctgtt 18478576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 42814366 - 42814239
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||| ||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  42814366 ttaaatgtgtcattggtccctgcactttcatcagattttggcattagtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 42814267  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  42814266 gtattggtccctctgttaactttctgtt 42814239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 180
Target Start/End: Complemental strand, 430944 - 430802
Alignment:
Q  38 taatatagattaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacac 137  Q
    |||||||  ||||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||| | || |||| | |||    
T  430944 taatataatttaggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttgacattggtccttgcac 430845  T
Q  138 tttataaaaaatttggtattagtcccttcgttaactttctgtt 180  Q
    ||| ||||||  |||||||| ||||||  ||||||||||||||    
T  430844 tttgtaaaaatattggtattggtccctctgttaactttctgtt 430802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 180
Target Start/End: Complemental strand, 14102983 - 14102857
Alignment:
Q  54 taaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttgg 153  Q
    ||||||||| ||| ||||||||||||||||| ||||||  |||||||| ||||||        ||||||| || |||||| |||||| ||||||  ||||    
T  14102983 taaatgtgtcattggtccctgcactttcatcaaattttgacattggtctctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattgg 14102884  T
Q  154 tattagtcccttcgttaactttctgtt 180  Q
    |||| ||||||  ||||||||||||||    
T  14102883 tattggtccctctgttaactttctgtt 14102857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 180
Target Start/End: Original strand, 18906924 - 18907054
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaat 149  Q
    ||||||||| |||  ||||||||||||||||||||  ||||| |||||||||||| |||        ||||||  || ||||||||||||| ||||||      
T  18906924 ggcttaaatatgtctttagtccctgcactttcatcagattttggcattggtccctacactttattttgtttggaattggtccctacactttgtaaaaata 18907023  T
Q  150 ttggtattagtcccttcgttaactttctgtt 180  Q
    |||||||| ||||||  ||||||||||||||    
T  18907024 ttggtattggtccctctgttaactttctgtt 18907054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 30413806 - 30413864
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    |||| |||||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  30413806 taggtttaaatatgtgattagtccttgcactttcacccaattttagcattggtccctgc 30413864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 970440 - 970564
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| |||||| |||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  970440 ttaaatgtgtaattggtccctgcactttcatcagattttggcattgatccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 970539  T
Q  153 gtattagtcccttcgttaactttct 177  Q
    ||||| ||||||  |||||||||||    
T  970540 gtattggtccctctgttaactttct 970564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 176
Target Start/End: Complemental strand, 18134121 - 18133993
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||||||||||||||| |||||||||||||||||  ||| |||| |||||||||||||| |        ||||||| || |||||| |||||| |||||     
T  18134121 taggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccctgcgcttttttttgtttggcattggtccctgcactttctaaaac 18134022  T
Q  148 atttggtattagtcccttcgttaactttc 176  Q
     |||||  ||||||| | |||||||||||    
T  18134021 ttttggctttagtccttccgttaactttc 18133993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 30415207 - 30415267
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    ||||||||||| |||||||||| |||||||||||| ||||||||  |||||||||||||||    
T  30415207 taggcttaaatatgtgattagttcctgcactttcacccaattttgacattggtccctgcac 30415267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 33850456 - 33850580
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| |||||| |||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  33850456 ttaaatgtgtaattggtccctgcactttcatcagattttggcattgatccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 33850555  T
Q  153 gtattagtcccttcgttaactttct 177  Q
    ||||| ||||||  |||||||||||    
T  33850556 gtattggtccctctgttaactttct 33850580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 4903008 - 4902881
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||  || |||||| |||||| ||||||  | |    
T  4903008 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggaattggtccctgcactttgtaaaaatatcg 4902909  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  4902908 gtattggtccctctgttaactttctgtt 4902881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 32504391 - 32504264
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||| | ||  ||||| |||||| ||||||  |||    
T  32504391 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttgacattgatccctgcactttgtaaaaatattg 32504292  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  32504291 gtattggtccctctgttaactttctgtt 32504264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 34826094 - 34825967
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| | ||||||||||||||        ||||||  || |||||| |||||| ||||||  |||    
T  34826094 ttaaatgtgtcattggtccctgcactttcatcagattttggtattggtccctgcacttttttttgtttggtattggtccctgcactttgtaaaaatattg 34825995  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  34825994 gtattggtccctctgttaactttctgtt 34825967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 2916324 - 2916268
Alignment:
Q  52 cttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||||| |||||||||||||||||| |||||||| |  |||||||||||||    
T  2916324 cttaaatgtgtgtttagtccctgcactttcacccaattttggttttggtccctgcac 2916268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 3963056 - 3963180
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| ||||||||| ||||||| ||||||  |||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  3963056 ttaaatgtgtcattggtccctgcattttcatcaaattttgacattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 3963155  T
Q  153 gtattagtcccttcgttaactttct 177  Q
    ||||| ||||||  | |||||||||    
T  3963156 gtattggtccctctgctaactttct 3963180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 9776969 - 9777029
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  9776969 taggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 9777029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 180
Target Start/End: Complemental strand, 42435063 - 42434931
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaa 148  Q
    |||||||||| ||| ||||||| |||||||||||||  ||||| |||||||||||| |||        ||||||  ||  |||||||||| | |||||||    
T  42435063 aggcttaaatatgtcattagtctctgcactttcatcagattttggcattggtccctacactttattttgtttggaattgatccctacactatgtaaaaaa 42434964  T
Q  149 t-ttggtattagtcccttcgttaactttctgtt 180  Q
    | |||||||| ||||||  ||||||||||||||    
T  42434963 tattggtattggtccctctgttaactttctgtt 42434931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 45002839 - 45002903
Alignment:
Q  44 agattaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||| |||||||||| ||| ||||||||||| |||||  ||||| ||||||||||||||||    
T  45002839 agattaggtttaaatgtgtcattggtccctgcactctcatcagattttggcattggtccctgcac 45002903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 2098675 - 2098620
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  2098675 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 2098620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 18707496 - 18707551
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  18707496 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 18707551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 4902626 - 4902752
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  |||||  |||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  4902626 ttaaatgtgtcattggtccctgcactttcatcagattttgtcattggtccctgcac-tttttttgtttggcattggtccctgcactttgtaaaaatattg 4902724  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
     |||| ||||||  ||||||||||||||    
T  4902725 ttattggtccctctgttaactttctgtt 4902752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 4950024 - 4950150
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  |||||  |||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  4950024 ttaaatgtgtcattggtccctgcactttcatcagattttgacattggtccctgcac-tttttttgtttggcattggtccctgcactttgtaaaaatattg 4950122  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
     |||| ||||||  ||||||||||||||    
T  4950123 ttattggtccctctgttaactttctgtt 4950150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 16026616 - 16026673
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||||| |||||||||||||||||  ||| |||| |||||| |||||    
T  16026616 ttaggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattgatccct 16026673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 2915477 - 2915517
Alignment:
Q  52 cttaaatgtgtgattagtccctgcactttcatccaatttta 92  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  2915477 cttaaatgtgtgtttagtccctgcactttcacccaatttta 2915517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 7900258 - 7900314
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||| | |  ||||||||||||||||||||  ||||||||||||||||||    
T  7900258 taggcttaaatatatctttagtccctgcactttcatcagattttagcattggtccct 7900314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 14827912 - 14827852
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgca 107  Q
    ||||| |||||||||| ||| |||| ||||||||||||  ||||| |||||||||||||||    
T  14827912 ttaggtttaaatgtgtcattggtccttgcactttcatcagattttggcattggtccctgca 14827852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 32654232 - 32654100
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| |||||||||||||||||  |||||   ||||||||||||||        ||||||| || |||||| |||||| |||||    
T  32654232 ttaggtttaaatgtgtcattggtccctgcactttcatcagattttgatattggtccctgcac-tttttttgtttggcattggtccctgcactttgtaaaa 32654134  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||||||| ||||||  ||||||||| ||||    
T  32654133 atattggtattggtccctctgttaactttttgtt 32654100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 16027650 - 16027599
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||| |||||||||||||||||  ||| |||| ||||||||||||    
T  16027650 ttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccct 16027599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 16265588 - 16265643
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  |||||  |||||||||||||||    
T  16265588 ttaaatgtgtcattggtccctgcactttcatcagattttgacattggtccctgcac 16265643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 32927713 - 32927768
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||| ||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  32927713 ttaaatatgtcattggtccctgcactttcatcagattttggcattggtccctgcac 32927768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 43600640 - 43600585
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||| |||||||||||||||||  ||| ||||  |||||||||||    
T  43600640 aggcttaaatgtgtgtttagtccctgcactttcgcccagttttgacattggtccct 43600585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 12819209 - 12819271
Alignment:
Q  46 attaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||| ||||||||||| ||||||||| |||||| |  ||||||| || |||||||||||||    
T  12819209 attaggtttaaatgtgtgtttagtcccttcacttttactcaattttggctttggtccctgcac 12819271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 39060406 - 39060464
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    ||||||||| |||  ||||||||||||||||||||  ||||| | ||||||||||||||    
T  39060406 ggcttaaatatgtctttagtccctgcactttcatcagattttggtattggtccctgcac 39060464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 18128777 - 18128834
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    |||||| |||||||| |||||||||||||||||   || |||| ||||||||||||||    
T  18128777 aggctttaatgtgtgtttagtccctgcactttcgctcagttttggcattggtccctgc 18128834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 41186661 - 41186601
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||| ||||||||||  || |||||||||||||||||  |||||  |||||||||||||||    
T  41186661 taggtttaaatgtgtcgttggtccctgcactttcatcagattttgacattggtccctgcac 41186601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 26695822 - 26695689
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| |||||||||||||||||  ||||| | ||||||||||||||        ||||||  || |||||| |||||| |||||    
T  26695822 ttaggtttaaatgtgtcattggtccctgcactttcatcagattttggtattggtccctgcacttgtttttgtttggtattggtccctgcactttgtaaaa 26695723  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||||||| ||||||| ||||||||||||||    
T  26695722 atattggtattggtccctttgttaactttctgtt 26695689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 7050935 - 7050808
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || ||||||  ||||| ||||||  |||    
T  7050935 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgaactttgtaaaaatattg 7050836  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  7050835 gtattggtccctctgttaactttctgtt 7050808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 34181542 - 34181416
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||||| |||||| ||    
T  34181542 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttat-aaaaatatg 34181444  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||| ||||    
T  34181443 gtattggtccctctgttaactttttgtt 34181416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 45488143 - 45488082
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||||| |||||||||||| | |||||||| |||||||| ||||||||||||||||    
T  45488143 ttaggcttaaatatgtgattagtccttacactttcacccaattttggcattggtccctgcac 45488082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 13101715 - 13101771
Alignment:
Q  46 attaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtcc 102  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| ||||| ||||    
T  13101715 attaggcttaaatgtgtgtttagtccatgcactttcatccaattttggcattagtcc 13101771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 41441408 - 41441472
Alignment:
Q  44 agattaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  41441408 agattaggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 41441472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 10495741 - 10495852
Alignment:
Q  69 tccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttggtattagtcccttcgt 168  Q
    ||||||||||||||||  |||||  |||||||||||||||        ||||||| || |||||| |||||| ||||||  |||||||||||||||  ||    
T  10495741 tccctgcactttcatcagattttgacattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattggtattagtccctctgt 10495840  T
Q  169 taactttctgtt 180  Q
    ||||||||||||    
T  10495841 taactttctgtt 10495852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 27696699 - 27696826
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||| | |||||| ||||||  |||    
T  27696699 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggccttggtccttgcactttgtaaaaatattg 27696798  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  || |||||||||||    
T  27696799 gtattggtccctctgtcaactttctgtt 27696826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 30794803 - 30794865
Alignment:
Q  46 attaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  30794803 attaggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 30794865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 7678657 - 7678524
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| |||  |||||||||||| |||||| ||||||||||||||||        ||||||| || |||||| |||||| |||||    
T  7678657 ttaggtttaaatgtgtcattggtcgatgcactttcatcaaattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaa 7678558  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  ||| |||| ||||||  | ||||||||||||    
T  7678557 atattgatattggtccctctgctaactttctgtt 7678524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 10837163 - 10837224
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    ||||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  10837163 ttaggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 10837224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 39116619 - 39116676
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||||| |||||||||||||||||  |||||||| |||||| |||||    
T  39116619 ttaggcttaaatgtgtgtttagtccctgcactttcgcccaattttggcattgatccct 39116676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 37406287 - 37406155
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||||||| ||| |||| |||||||| |||  ||||| ||||||||||||||||        ||||||| || |||| | |||||| ||||||    
T  37406287 taggtttaaatgtgttattggtccttgcactttgatcagattttggcattggtccctgcacttttttttgtttggcattggtccttgcactttgtaaaaa 37406188  T
Q  148 atttggtattagtcccttcgttaactttctgtt 180  Q
      |||||||| ||||||  ||||||||||||||    
T  37406187 tattggtattggtccctctgttaactttctgtt 37406155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 2056723 - 2056850
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| |||||||| |||||||        ||||||| || |||||| |||||| ||||||  |||    
T  2056723 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggttcctgcactattttttgtttggcattggtccctgcactttgtaaaaatattg 2056822  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
      ||| ||||||| ||||||||| ||||    
T  2056823 aaattggtccctttgttaactttatgtt 2056850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 42216666 - 42216611
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  42216666 ttaaatgtgtcattggtccctgcactttcatcggattttggcattggtccctgcac 42216611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 2232729 - 2232790
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    ||||| |||||||||| ||| |||||||||||||||||  |||||  |||||||||||||||    
T  2232729 ttaggtttaaatgtgtcattggtccctgcactttcatcagattttgacattggtccctgcac 2232790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 7889945 - 7889889
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||||||| |||||||||||||||||  ||| ||||  |||||||||||    
T  7889945 taggcttaaatgtgtgtttagtccctgcactttcgcccagttttgacattggtccct 7889889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 43921779 - 43921747
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcacttt 80  Q
    |||||||||||||||||||||||||||||||||    
T  43921779 taggcttaaatgtgtgattagtccctgcacttt 43921747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 2705549 - 2705494
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| |||  ||||||||||||||||  ||||| ||||||||||||||||    
T  2705549 ttaaatgtgtcattgatccctgcactttcatcagattttggcattggtccctgcac 2705494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 9855310 - 9855365
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| ||||||| |||||||||  ||||| ||||||||||||||||    
T  9855310 ttaaatgtgtcattggtccctgtactttcatcagattttggcattggtccctgcac 9855365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 9855720 - 9855589
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac-nnnnnnnngtttggctttagtccctacactttataaaaaa 148  Q
    ||||||||| |||  ||||||||||||||||||||  ||||| |||||||||||| |||         ||||||  ||  |||||||||||| ||||||     
T  9855720 ggcttaaatatgtctttagtccctgcactttcatcagattttggcattggtccctacactttttttttgtttggaattgatccctacactttgtaaaaat 9855621  T
Q  149 tttggtattagtcccttcgttaactttctgtt 180  Q
     |||||||| ||||||  ||||||||||||||    
T  9855620 attggtattggtccctctgttaactttctgtt 9855589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 17696613 - 17696668
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  |||||  |||||||||||||||    
T  17696613 ttaaatgtgtcattggtccctgcactttcatcagattttgacattggtccctgcac 17696668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 32923727 - 32923782
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||| ||||||    
T  32923727 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtctctgcac 32923782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 43857466 - 43857520
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgca 107  Q
    |||||||||| ||| ||||||||||||||||| ||||||  ||||||| ||||||    
T  43857466 ttaaatgtgtcattggtccctgcactttcatcaaattttgacattggttcctgca 43857520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 4529026 - 4528973
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    |||||||||| ||| |||||||||||||||||  |||||  |||||||||||||    
T  4529026 ttaaatgtgtcattggtccctgcactttcatcagattttgacattggtccctgc 4528973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 9177503 - 9177442
Alignment:
Q  46 attaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgca 107  Q
    |||||||| ||||||||| || ||||||||||||||| | |||||| | || ||||||||||    
T  9177503 attaggctaaaatgtgtgtttggtccctgcactttcacctaattttggtatcggtccctgca 9177442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 7888731 - 7888787
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||||||| |||||| ||||||||||   || |||| ||||||||||||    
T  7888731 taggcttaaatgtgtgtttagtctctgcactttcgctcacttttggcattggtccct 7888787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 19948204 - 19948144
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||| ||||||||||| ||||||||| |||||| |  ||||||| || |||||||||||||    
T  19948204 taggtttaaatgtgtgtttagtcccttcacttttactcaattttggctttggtccctgcac 19948144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 13198970 - 13199103
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||         |||||| || |||||| |||||| |||||    
T  13198970 ttaggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttatttggcattggtccctgcactttttaaaa 13199069  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||||||| ||||||  ||||||||||||||    
T  13199070 atattggtattggtccctctgttaactttctgtt 13199103  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 51892666 - 51892793
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  51892666 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 51892765  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||| ||  ||||||||||||||    
T  51892766 gtattggtctctctgttaactttctgtt 51892793  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 39210672 - 39210539
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| ||||||||||||||||| |||||| |||||||| ||| |||        ||||||| || |||||| |||||| |||||    
T  39210672 ttaggtttaaatgtgtcattggtccctgcactttcatcaaattttggcattggtacctacacttttttttgtttggcgttggtccctgcactttgtaaaa 39210573  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  | |||||| ||||||  ||||||||||||||    
T  39210572 atatcggtattggtccctctgttaactttctgtt 39210539  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 55604216 - 55604159
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||||| || ||||||||||||||  |||||||||||||||||||||    
T  55604216 ttaggcttaaatgtgtgtttggtccctgcactttcgcccaattttagcattggtccct 55604159  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 40147348 - 40147480
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||  || |||||| |||||| |||||    
T  40147348 ttaggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac-tttttttgtttggaattggtccctgcactttgtaaaa 40147446  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||||||| ||| ||| ||||||||||||||    
T  40147447 atattggtattggtctctttgttaactttctgtt 40147480  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 29618619 - 29618677
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||| | |||||||||||    
T  29618619 taggcttaaatgtgtgtttagtccttgcactttcacccaattttaactttggtccctgc 29618677  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 40087297 - 40087239
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    |||| ||||||||||| ||||||||||||||||||  ||||||| ||||||||||||||    
T  40087297 taggtttaaatgtgtgtttagtccctgcactttcactcaattttggcattggtccctgc 40087239  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 49263871 - 49264004
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| ||||||||||||||||   ||||| ||||||||||||||||        ||||||| ||  ||| | |||||| |||||    
T  49263871 ttaggtttaaatgtgtcattggtccctgcactttcattagattttggcattggtccctgcacttttttttgtttggcattgatccttgcactttgtaaaa 49263970  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||||||| ||||||  ||||||||||||||    
T  49263971 atattggtattggtccctctgttaactttctgtt 49264004  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 52096563 - 52096696
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    |||||||||||| |||  |||||||||||| |||||||  ||||| |||||||||| | |||        ||||||  || ||||||||||||| |||||    
T  52096563 ttaggcttaaatatgtctttagtccctgcattttcatcagattttggcattggtccatacactttattttgtttggaattggtccctacactttgtaaaa 52096662  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||||||| |||| || ||||||||||||||    
T  52096663 atattggtattggtccttttgttaactttctgtt 52096696  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 55601205 - 55601257
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctg 105  Q
    ||||||||||| ||||||||||||||||| |||| |||| |||||||||||||    
T  55601205 ttaaatgtgtgtttagtccctgcactttcgtccagttttggcattggtccctg 55601257  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 322056 - 322001
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  322056 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 322001  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 919181 - 919236
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| |||||||||||||||||||||  ||||| ||||||||| ||||||    
T  919181 ttaaatgtgtcattagtccctgcactttcatcagattttggcattggtctctgcac 919236  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 5340227 - 5340168
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| |||| |||||||||||||||||  | |||||| ||||||||||||||||    
T  5340227 aggcttaaatatgtgtttagtccctgcactttcgcctaattttggcattggtccctgcac 5340168  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 11315481 - 11315540
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    |||| |||||||||||| ||||||||||||||||| |||| |||| |||||||| |||||    
T  11315481 ttagacttaaatgtgtgtttagtccctgcactttcgtccagttttggcattggttcctgc 11315540  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 15168916 - 15168971
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  15168916 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 15168971  T

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Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 16335054 - 16335181
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||| ||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| ||  ||||| |||||| ||||||    
T  16335054 taggtttaaatctgtcattggtccctgcactttcatcagattttggcattggtccctgcactttttttcgtttggcattgatccctgcactttgtaaaaa 16335153  T
Q  148 atttggtattagtcccttcgttaacttt 175  Q
      |||||||| ||||||  |||||||||    
T  16335154 tattggtattggtccctctgttaacttt 16335181  T

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Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 23205702 - 23205757
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  23205702 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 23205757  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 41965549 - 41965422
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| ||| |||||||||||||  ||||| ||||||||||||| ||        ||||||| || |||||| |||||| ||||||  |||    
T  41965549 ttaaatgtgtcattggtctctgcactttcatcagattttggcattggtccctgtacttttttttgtttggcattggtccctgcactttgtaaaaatattg 41965450  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||| ||||    
T  41965449 gtattggtccctctgttaactttttgtt 41965422  T

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Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 42496339 - 42496284
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  42496339 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 42496284  T

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Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 45848682 - 45848556
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| ||||| |||||||||||  ||||| |||||||||||||||         ||||||  || ||||||||||||| ||||||  |||    
T  45848682 ttaaatgtgtcattggtcccagcactttcatcagattttggcattggtccctgca-ttttttttgtttggtattggtccctacactttgtaaaaatattg 45848584  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  45848583 gtattggtccctctgttaactttctgtt 45848556  T

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Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 46009032 - 46008977
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  46009032 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 46008977  T

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Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 46264842 - 46264787
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||| |||||||||||||||||  ||| |||| ||||||||||||    
T  46264842 aggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccct 46264787  T

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Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 49404280 - 49404225
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctg 105  Q
    |||||||||||||| || |||| ||||||||||  |||||||||||||||||||||    
T  49404280 ggcttaaatgtgtgtttggtccttgcactttcactcaattttagcattggtccctg 49404225  T

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Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 45311193 - 45311303
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| ||||||| |||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| |||||    
T  45311193 ttaggtttaaatgtgtcattggtccctgtactttcatcatattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaa 45311292  T
Q  147 aatttggtatt 157  Q
    |  ||||||||    
T  45311293 atattggtatt 45311303  T

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Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 51716498 - 51716436
Alignment:
Q  118 tttggctttagtccctacactttataaaaaatttggtattagtcccttcgttaactttctgtt 180  Q
    |||||| || ||||||||||||| ||||||  |||||||||||||||  ||||||||||||||    
T  51716498 tttggcattggtccctacactttgtaaaaatattggtattagtccctctgttaactttctgtt 51716436  T

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Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 5814187 - 5814058
Alignment:
Q  51 gcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatt 150  Q
    |||||||| |||  ||||||||||||||||||||  ||||| |||||||||||| |||        ||||||  || |||||| |||||| ||||||  |    
T  5814187 gcttaaatatgtctttagtccctgcactttcatcagattttggcattggtccctacacttttttttgtttggaattggtccctgcactttgtaaaaatat 5814088  T
Q  151 tggtattagtcccttcgttaactttctgtt 180  Q
    |||||||  |||||  ||||||||||||||    
T  5814087 tggtattgatccctctgttaactttctgtt 5814058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 19842210 - 19842263
Alignment:
Q  52 cttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctg 105  Q
    |||||||||||| || |||| |||||||||| |||||||| |||||||||||||    
T  19842210 cttaaatgtgtgtttggtccatgcactttcacccaattttggcattggtccctg 19842263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 28692950 - 28693007
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||| |||||||||| |||  ||||||||||||||||  ||||||||||||||||||    
T  28692950 ttaggtttaaatgtgttattgctccctgcactttcatcatattttagcattggtccct 28693007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 888065 - 888181
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||||||| ||| ||||||||||||| |||  ||||| |||||||||| |||||        ||||||| || |||||| |||||| ||||||    
T  888065 taggtttaaatgtgtcattggtccctgcacttttatcagattttggcattggtccatgcacttttttttgtttggcattggtccctgcactttgtaaaaa 888164  T
Q  148 atttggtattagtccct 164  Q
      |||||||| ||||||    
T  888165 tattggtattggtccct 888181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 35378074 - 35377942
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||||||| ||| ||||||||| |||||||  ||||| ||||||||||||| ||        ||||||  || |||| | |||||| ||||||    
T  35378074 taggtttaaatgtgtcattggtccctgcaatttcatcagattttggcattggtccctgtacttttttttgtttggtattggtccatgcactttgtaaaaa 35377975  T
Q  148 atttggtattagtcccttcgttaactttctgtt 180  Q
      |||||||| ||||||  ||||||||||||||    
T  35377974 tattggtattggtccctctgttaactttctgtt 35377942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 47690706 - 47690574
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||| |||  ||||||||||||||||||||  ||||| |||||||||||| |||        ||||||  || ||||||||||||| ||||||    
T  47690706 taggtttaaatatgtctttagtccctgcactttcatcagattttggcattggtccctacacttttttttgtttggaattggtccctacactttgtaaaaa 47690607  T
Q  148 atttggtattagtcccttcgttaactttctgtt 180  Q
      ||||||||  |||||  |||||| |||||||    
T  47690606 tattggtattgatccctctgttaaccttctgtt 47690574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 5337975 - 5338030
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    ||||||||||| ||||||| |||||||||  ||| |||| ||||||||||||||||    
T  5337975 ttaaatgtgtgtttagtccttgcactttcccccagttttggcattggtccctgcac 5338030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 8445067 - 8445012
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| ||||||||||||| |||  ||||| ||||||||||||||||    
T  8445067 ttaaatgtgtcattggtccctgcacttttatcagattttggcattggtccctgcac 8445012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 10616465 - 10616520
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||| ||||||    
T  10616465 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtctctgcac 10616520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 19842826 - 19842775
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||| || || ||||||||||||||| |||||||| ||||||||||||    
T  19842826 ttaaatgtatgtttggtccctgcactttcacccaattttggcattggtccct 19842775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 31317637 - 31317582
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| ||| |||||||||||||  ||||| ||||||||||||||||    
T  31317637 ttaaatgtgtcattggtctctgcactttcatcagattttggcattggtccctgcac 31317582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 43980185 - 43980134
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||    
T  43980185 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccct 43980134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 45226404 - 45226365
Alignment:
Q  65 ttagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  45226404 ttagtccctgcactttcatcaaattttggcattggtccct 45226365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 46263684 - 46263739
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||| |||||||||||||||||  ||  |||| ||||||||||||    
T  46263684 aggcttaaatgtgtgtttagtccctgcactttcgccccgttttggcattggtccct 46263739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 51893030 - 51892915
Alignment:
Q  65 ttagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttggtattagtccct 164  Q
    ||||||| ||||||||||||  ||||| |||||| ||||| |||        ||||||  || ||||||||||||| ||||||  |||||||| ||||||    
T  51893030 ttagtccttgcactttcatcagattttggcattgatccctacacttttttttgtttggaattggtccctacactttgtaaaaatattggtattggtccct 51892931  T
Q  165 tcgttaactttctgtt 180  Q
      ||||||||||||||    
T  51892930 ctgttaactttctgtt 51892915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 53940754 - 53940699
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| ||||||||||||| |||  ||||| ||||||||||||||||    
T  53940754 ttaaatgtgtcattggtccctgcacttttatcagattttggcattggtccctgcac 53940699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 49148167 - 49148225
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    ||||||||| ||| ||||||||||||||||||| |  ||||| |||||||||| |||||    
T  49148167 ggcttaaatatgtcattagtccctgcactttcaccatattttggcattggtccttgcac 49148225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 32384318 - 32384265
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtcc 102  Q
    |||||||||| |||  ||||||||||||||||||||  ||||| ||||||||||    
T  32384318 aggcttaaatatgtctttagtccctgcactttcatcagattttggcattggtcc 32384265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 32384098 - 32384150
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctg 105  Q
    |||||| ||| ||| |||||||||||||||||  ||||| |||||||||||||    
T  32384098 ttaaatatgtcattggtccctgcactttcatcagattttggcattggtccctg 32384150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 1342435 - 1342562
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| ||  ||||| |||||| ||||||  |||    
T  1342435 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattgatccctgcactttgtaaaaatattg 1342534  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  1342535 gtattggtccctctgttaactttctgtt 1342562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 5132741 - 5132614
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  |||||  |||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  5132741 ttaaatgtgtcattggtccctgcactttcatcagattttgacattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 5132642  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  5132641 gtattggtccctctgttaactttctgtt 5132614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 38717740 - 38717613
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| |||||||||| |||||        ||||||| || |||||| |||||| ||||||  |||    
T  38717740 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccttgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 38717641  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||||||  ||||||||||||||    
T  38717640 gtattggtccctctgttaactttctgtt 38717613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 47647855 - 47647988
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| |||||||||||||||||  ||||| ||||||||| ||||||        || |||| || |||||| |||||| |||||    
T  47647855 ttaggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtctctgcacttttttttgtatggcattggtccctgcactttgtaaaa 47647954  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||||||| ||||||  ||||||||||||||    
T  47647955 atattggtattggtccctctgttaactttctgtt 47647988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 17077324 - 17077456
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||||||| ||| |||| ||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||    
T  17077324 taggtttaaatgtgtcattggtccttgcactttcatcatattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaa 17077423  T
Q  148 atttggtattagtcccttcgttaactttctgtt 180  Q
      ||||||||| || ||  ||||||||||||||    
T  17077424 tattggtattaatctctctgttaactttctgtt 17077456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 45950906 - 45951033
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||| | || |||||| |||||| ||||||  |||    
T  45950906 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttgacattggtccctgcactttgtaaaaatattg 45951005  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    ||||| ||| ||  ||||||||||||||    
T  45951006 gtattggtctctctgttaactttctgtt 45951033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 28418879 - 28418949
Alignment:
Q  34 catataatatagattaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||| ||  ||||||||||||||||| ||||||||||||||||| |||| |||| | ||||||||||    
T  28418879 catataatttattttaggcttaaatgtgtgtttagtccctgcactttcgtccagttttggtattggtccct 28418949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 32486862 - 32486916
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgca 107  Q
    |||||||||| |||||||||||||||||||||  ||||| |||||||||||||||    
T  32486862 ttaaatgtgtcattagtccctgcactttcatcagattttggcattggtccctgca 32486916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 8679821 - 8679878
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    ||||||||||||||| || ||||||||||||||| | |||||| ||||||||||||||    
T  8679821 aggcttaaatgtgtgtttggtccctgcactttcacctaatttttgcattggtccctgc 8679878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 2730734 - 2730866
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| |||||||||| ||| ||||||||||||| |||  ||||| ||||||||||||||||        ||||| | || |||||| |||||| |||||    
T  2730734 ttaggtttaaatgtgttattggtccctgcacttttatcagattttggcattggtccctgcac-tttttttgtttgacattggtccctgcactttgtaaaa 2730832  T
Q  147 aatttggtattagtcccttcgttaactttctgtt 180  Q
    |  |||||||| ||||||  ||||||||||||||    
T  2730833 atattggtattggtccctctgttaactttctgtt 2730866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 5904816 - 5904944
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatc-caattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaattt 151  Q
    |||||||||| ||| ||||||||||||| |||  |||||| ||||||||||||||||        ||||||| || |||| | |||||| ||||||  ||    
T  5904816 ttaaatgtgtcattggtccctgcacttttatcagaattttggcattggtccctgcacttttttttgtttggcattggtccatgcactttgtaaaaatatt 5904915  T
Q  152 ggtattagtcccttcgttaactttctgtt 180  Q
    |||||| ||||||  ||||||||||||||    
T  5904916 ggtattggtccctcggttaactttctgtt 5904944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 25379014 - 25378890
Alignment:
Q  56 aatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttggta 155  Q
    ||||||| ||| |||||||||||||||||  ||||| ||||||||| ||||||        ||||||| || |||||| |||||| ||||||  ||| ||    
T  25379014 aatgtgtcattggtccctgcactttcatcagattttggcattggtctctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattgtta 25378915  T
Q  156 ttagtcccttcgttaactttctgtt 180  Q
    || ||||||  ||||||||||||||    
T  25378914 ttggtccctctgttaactttctgtt 25378890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 1366683 - 1366628
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  1366683 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 1366628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 2930964 - 2931075
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||| ||||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||  |||    
T  2930964 ttaattgtgtcattggtccctgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaatattg 2931063  T
Q  153 gtattagtccct 164  Q
    ||||| ||||||    
T  2931064 gtattggtccct 2931075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 3773489 - 3773434
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||| |||||||||||||||||  ||| |||| ||||||||||||    
T  3773489 aggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccct 3773434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 28420013 - 28419958
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||| |||||||||||||||||  ||| |||| ||||||||||||    
T  28420013 aggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccct 28419958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 36322353 - 36322408
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||| |||||||||||||||||  ||| |||| ||||||||||||    
T  36322353 aggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccct 36322408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 39524272 - 39524327
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  39524272 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 39524327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 9359735 - 9359789
Alignment:
Q  50 ggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||||| |||||||||||||||||  ||| |||| ||||||||||||    
T  9359735 ggcttaaatgtgtgtttagtccctgcactttcgcccagttttggcattggtccct 9359789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 9362907 - 9362849
Alignment:
Q  46 attaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||||||||| |||||||||||||||||  ||| |||| | ||||||||||    
T  9362907 attaggcttaaatgtgtgtttagtccctgcactttcgcccagttttggtattggtccct 9362849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 51031954 - 51032008
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccc 103  Q
    ||||||||||||||| ||  |||||||||||||| |||||||| |||||||||||    
T  51031954 aggcttaaatgtgtgtttgatccctgcactttcacccaattttggcattggtccc 51032008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 28487037 - 28486976
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    ||||| |||||||||| ||| |||||||||||||||||  || || ||||||||||||||||    
T  28487037 ttaggtttaaatgtgtcattggtccctgcactttcatcagatattggcattggtccctgcac 28486976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 33554836 - 33554893
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    ||||||||||||||| ||||||||| |||||||  ||| |||| ||||||||||||||    
T  33554836 aggcttaaatgtgtgtttagtccctacactttcgcccagttttggcattggtccctgc 33554893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 3772390 - 3772446
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||||||| |||||||||||||||||  ||| |||| | ||||||||||    
T  3772390 taggcttaaatgtgtgtttagtccctgcactttcgcccagttttggtattggtccct 3772446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 6782976 - 6782916
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||| |||||||||| ||| |||| ||||||||||||  ||||| ||||||||||||||||    
T  6782976 taggtttaaatgtgtcattggtccttgcactttcatcagattttggcattggtccctgcac 6782916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 175
Target Start/End: Complemental strand, 36097115 - 36096987
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaa 146  Q
    ||||| ||||||||||| ||| ||||||||||||| |||| |||| |||||||| ||| | |        ||||||| ||||||||| |||||| |||||    
T  36097115 ttaggtttaaatgtgtgtttattccctgcactttcgtccagttttggcattggttcctacgcttttttttgtttggcattagtccctgcactttctaaaa 36097016  T
Q  147 aatttggtattagtcccttcgttaacttt 175  Q
      |||||  ||||||| | ||||||||||    
T  36097015 cttttggctttagtccttccgttaacttt 36096987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 36726487 - 36726432
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    ||||||||||| || ||||||||| ||||||| |||||| || |||||||||||||    
T  36726487 ttaaatgtgtgtttggtccctgcattttcatctaattttggctttggtccctgcac 36726432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 37351343 - 37351288
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| |||||||||| |||||    
T  37351343 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccttgcac 37351288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 38872919 - 38872864
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  |||||  |||||||||||||||    
T  38872919 ttaaatgtgtcattggtccctgcactttcatcagattttgacattggtccctgcac 38872864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 43741687 - 43741632
Alignment:
Q  51 gcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgc 106  Q
    ||||||||||||| ||||||||||||||||||  |||||||  | |||||||||||    
T  43741687 gcttaaatgtgtgtttagtccctgcactttcactcaattttgactttggtccctgc 43741632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 47672003 - 47672058
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||  ||||||||||||||||    
T  47672003 ttaaatgtgtcattggtccctgcactttcatcagatttaggcattggtccctgcac 47672058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 50756058 - 50755943
Alignment:
Q  65 ttagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttggtattagtccct 164  Q
    ||||||| ||||||||||||  ||||| |||||||||||| ||         ||||||  || |||||| |||||| ||||||  |||||||||||||||    
T  50756058 ttagtccttgcactttcatcagattttggcattggtccctacaattttttttgtttggaattggtccctgcactttgtaaaaatattggtattagtccct 50755959  T
Q  165 tcgttaactttctgtt 180  Q
      ||||||||||||||    
T  50755958 ctgttaactttctgtt 50755943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 15624039 - 15624006
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttc 81  Q
    |||||||||||||||| |||||||||||||||||    
T  15624039 taggcttaaatgtgtgtttagtccctgcactttc 15624006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 28838518 - 28838465
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtc 101  Q
    |||| |||||||||| ||| |||||||||||||||||  ||||| |||||||||    
T  28838518 taggtttaaatgtgtcattggtccctgcactttcatcagattttggcattggtc 28838465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 36087657 - 36087702
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattg 98  Q
    ||||||||||| ||||| ||||||||||| |||| |||||||||||    
T  36087657 ttaaatgtgtgtttagttcctgcactttcgtccagttttagcattg 36087702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 45216644 - 45216587
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||||| ||||||||||||||||   ||| ||||  |||||||||||    
T  45216644 ttaggcttaaatgtgtgtttagtccctgcacttttgcccagttttgacattggtccct 45216587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 8680756 - 8680708
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcatt 97  Q
    ||||||||||||||| || |||||||||||| || |||||||| |||||    
T  8680756 aggcttaaatgtgtgtttggtccctgcacttccacccaattttggcatt 8680708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 15622176 - 15622208
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttc 81  Q
    ||||||||||||||| |||||||||||||||||    
T  15622176 aggcttaaatgtgtgtttagtccctgcactttc 15622208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 3622 - 3679
Alignment:
Q  47 ttaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||||    
T  3622 ttaggcttaaatgtgtgtttagtccctgcactttcgtccagttttggcattggtccct 3679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 4703 - 4648
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccct 104  Q
    ||||||||||||||| |||||||||||||||||  ||| |||| | ||||||||||    
T  4703 aggcttaaatgtgtgtttagtccctgcactttcgcccagttttggtattggtccct 4648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 58834 - 58702
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||||||| ||| |||| ||||||||||||  ||||| ||||||||||||||||        ||||||| || |||||| |||||| ||||||    
T  58834 taggtttaaatgtgtcattggtccatgcactttcatcagattttggcattggtccctgcacttttttttgtttggcattggtccctgcactttgtaaaaa 58735  T
Q  148 atttggtattagtcccttcgttaactttctgtt 180  Q
      |||||||| ||||||  ||||||||| ||||    
T  58734 tattggtattggtccctctgttaactttttgtt 58702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 180
Target Start/End: Complemental strand, 50130 - 49999
Alignment:
Q  49 aggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaa 148  Q
    |||||||||| |||  ||||||||||||||||||||  ||||| |||||||||||| |||        ||||||  || |||| |||||||| ||||||     
T  50130 aggcttaaatatgtctttagtccctgcactttcatcagattttggcattggtccctacactttattttgtttggaattggtccatacactttgtaaaaat 50031  T
Q  149 tttggtattagtcccttcgttaactttctgtt 180  Q
     |||||||| ||||||  ||||||||||||||    
T  50030 attggtattggtccctctgttaactttctgtt 49999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 49720 - 49774
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgca 107  Q
    |||||||||| ||| |||||||||||||||||  ||||| | |||||||||||||    
T  49720 ttaaatgtgtcattggtccctgcactttcatcagattttggtattggtccctgca 49774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 5865 - 5810
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  5865 ttaaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 5810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 57806 - 57679
Alignment:
Q  48 taggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaa 147  Q
    |||| |||||| ||| ||| |||||||||||||||||  ||||| ||||||||||||||||        ||||||| ||  ||||| |||||| ||||||    
T  57806 taggtttaaatctgtcattggtccctgcactttcatcagattttggcattggtccctgcactttttttcgtttggcattgatccctgcactttgtaaaaa 57707  T
Q  148 atttggtattagtcccttcgttaacttt 175  Q
      |||||||| ||||||  |||||||||    
T  57706 tattggtattggtccctctgttaacttt 57679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 17246 - 17119
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcacnnnnnnnngtttggctttagtccctacactttataaaaaatttg 152  Q
    |||||||||| ||| ||||||||||||||||   ||||| ||||||||||||||||        ||||| | || |||||| |||||| ||||||  |||    
T  17246 ttaaatgtgttattggtccctgcactttcattagattttggcattggtccctgcacttttttttgtttgacattggtccctgcactttgtaaaaatattg 17147  T
Q  153 gtattagtcccttcgttaactttctgtt 180  Q
    |||||||||| |  ||||| ||||||||    
T  17146 gtattagtccatctgttaaatttctgtt 17119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 9590 - 9644
Alignment:
Q  54 taaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    ||||||||| ||| |||||||||||||||||  ||||| ||||||||||||||||    
T  9590 taaatgtgtcattggtccctgcactttcatcagattttggcattggtccctgcac 9644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 9625 - 9687
Alignment:
Q  118 tttggctttagtccctacactttataaaaaatttggtattagtcccttcgttaactttctgtt 180  Q
    |||||| || |||||| |||||| ||||||  |||||||||||||||  ||||||||||||||    
T  9625 tttggcattggtccctgcactttgtaaaaatattggtattagtccctctgttaactttctgtt 9687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 12983 - 13022
Alignment:
Q  65 ttagtccctgcactttcatccaattttagcattggtccct 104  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  12983 ttagtccctgcactttcatcaaattttggcattggtccct 13022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 35749 - 35694
Alignment:
Q  53 ttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||||||| ||| |||||||||||||||||  ||||| |||||| |||||||||    
T  35749 ttaaatgtgtcattggtccctgcactttcatcagattttggcattgatccctgcac 35694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 1624 - 1562
Alignment:
Q  46 attaggcttaaatgtgtgattagtccctgcactttcatccaattttagcattggtccctgcac 108  Q
    |||||| |||||||||| ||| |||| ||||||||||||  ||||| |||||| |||||||||    
T  1624 attaggtttaaatgtgtaattggtccttgcactttcatcagattttggcattgatccctgcac 1562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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