View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16064_low_1 (Length: 730)
Name: NF16064_low_1
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 3e-78; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 540 - 712
Target Start/End: Complemental strand, 3559000 - 3558828
Alignment:
| Q |
540 |
caggtagagtataaaataatgttactatgattttgacccnnnnnnnntgactccatttattcatttaattacctctaaaaatttcaattcaacctcaata |
639 |
Q |
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| T |
3559000 |
caggtagagtataaaataatgttactatgattttgacccaaaaaaaatgactccatttattcatttaattacctctaaaaatttcaattcaacctcaata |
3558901 |
T |
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| Q |
640 |
ggctattaaaaggatcatatataagctgatgcaagccaagggaatgagttgagaatgagacagaaagtgaaag |
712 |
Q |
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| T |
3558900 |
ggctattaaaaggatcatatataagctgatgcaagccaagggaatgagttgagaatgagacagaaagtgaaag |
3558828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 187 - 356
Target Start/End: Complemental strand, 3559406 - 3559233
Alignment:
| Q |
187 |
tgcatgtttgacaagtgctcgctcaaatacgcacaaatgaaatacat----ggtcccaaaaataaaaaccaaaacataacacagcaacctcatcacgttg |
282 |
Q |
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| T |
3559406 |
tgcatgtttgacaagtgcttgctcaaatacacacaaatgcaatacatacatggtcccaaaaataaaaaccaaaacataacacagcaacctcatcacgttg |
3559307 |
T |
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| Q |
283 |
tttacatagcttcatttataacttgaaatttgaacatatcttggaatttaaacagtttaaaagtgaaataagaa |
356 |
Q |
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| T |
3559306 |
tttacatagcttcatttataacttgaaatttgaacatatcttggaatttaaacagtttaaaagagaaataagaa |
3559233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 392 - 517
Target Start/End: Complemental strand, 3559153 - 3559024
Alignment:
| Q |
392 |
tttacaaaatggcaattgatgcatggggcgtat----cttaggcatgacatttgtgtttgaactaacaatgatggaatctttgggaattgaaagtagtag |
487 |
Q |
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| T |
3559153 |
tttacaaaatggcaattgatgcatggggcgtatatatcttaggcatgacatttgtgtttgaactaacaatgatggaatctttgggaattgaaagtagtag |
3559054 |
T |
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| Q |
488 |
gtggatcacttatctgtaccctctcccttc |
517 |
Q |
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| T |
3559053 |
gtggatcacttatctgtaccctctcccttc |
3559024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 3559562 - 3559476
Alignment:
| Q |
19 |
ccgtttgatagaatctatatttaaatcttgattaaaattatcgttcattagactttacttaattagtactattgttttgattttaaacatt |
109 |
Q |
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| T |
3559562 |
ccgtttgatagaatctacatttaaatcttgattaaaataatctttcattagactttac----ttagaactattgttttgattttaaacatt |
3559476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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