View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16064_low_12 (Length: 353)
Name: NF16064_low_12
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 336
Target Start/End: Original strand, 34644460 - 34644780
Alignment:
| Q |
16 |
aatatccaaacaacttggcaacatggttaacccaaatttgtggcataagaactcacgtttggctttacagaagctgaaccagtcgcacacagtgagacta |
115 |
Q |
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| T |
34644460 |
aatatccaaacaacttggcaacatggttagcccaaatttgtggcataagaactcacgtttggctttacagaagctgaaccagtcgcacatagtgagacta |
34644559 |
T |
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| Q |
116 |
gttcagtacaacgttgtaggtctaaggccacacctattattttatggcatatgtaatcaaataaatccgactcaacgagataatgatttagatttttgga |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34644560 |
gttcagtacaacattgtaggtctaaggccacacctattattttatggcatatgtaatcaaataaatccgactcaacgagataatgatttatatttttgga |
34644659 |
T |
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| Q |
216 |
ggatttgaagtagattgtagaagcaacttaccctcgtcattttaatatttcagttttaggaatatgttcaagggagaaatatgtgatttcattcttgctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34644660 |
ggatttgaagtagattgtagaagcaacttaccctcgtcattttaatatttcagttttaggaatatgttcaagggagaaatatgtgatttcattcttgctt |
34644759 |
T |
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| Q |
316 |
caactagcagaagaacacctt |
336 |
Q |
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||||||||||||||||||||| |
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| T |
34644760 |
caactagcagaagaacacctt |
34644780 |
T |
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