View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16064_low_13 (Length: 352)

Name: NF16064_low_13
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16064_low_13
NF16064_low_13
[»] chr4 (1 HSPs)
chr4 (8-343)||(54572653-54572983)
[»] chr7 (2 HSPs)
chr7 (191-320)||(38787029-38787158)
chr7 (246-309)||(4648282-4648345)
[»] chr3 (6 HSPs)
chr3 (234-318)||(24734339-24734423)
chr3 (230-321)||(53833977-53834068)
chr3 (230-320)||(16196750-16196840)
chr3 (248-311)||(3083783-3083846)
chr3 (234-320)||(53837576-53837662)
chr3 (249-312)||(7910318-7910381)
[»] chr2 (3 HSPs)
chr2 (190-320)||(27648308-27648440)
chr2 (231-320)||(44686206-44686295)
chr2 (190-321)||(36338980-36339113)
[»] chr1 (3 HSPs)
chr1 (181-320)||(47833759-47833896)
chr1 (217-318)||(2079112-2079213)
chr1 (230-312)||(25588693-25588774)
[»] chr8 (2 HSPs)
chr8 (230-320)||(24542657-24542747)
chr8 (234-320)||(15051516-15051602)
[»] chr5 (3 HSPs)
chr5 (218-309)||(33544976-33545068)
chr5 (235-311)||(33827499-33827575)
chr5 (235-309)||(17895633-17895707)
[»] chr6 (6 HSPs)
chr6 (231-303)||(14802777-14802849)
chr6 (231-309)||(31984797-31984873)
chr6 (246-320)||(353019-353093)
chr6 (230-311)||(12273588-12273669)
chr6 (230-285)||(807670-807725)
chr6 (246-284)||(31405733-31405771)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 54572653 - 54572983
Alignment:
Q  8 ttacattcctatgcttattcaactcatattaatttggtttaatatacaggtgataaaggggatagggtgagagagatgaaaatggttttgagagaatacg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54572653 ttacattcctatgcttattcaactcatattaatttggtttaatatacaagtgataaaggggatagggtgagagagatgaacatggttttgagagaatacg 54572752  T
Q  108 tatgtgacaaaaggctggctacttcaatctctcttgttttctcactttcatttcttcttttcaattttggtctctaataacaaataacaaatatatatta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||    
T  54572753 tatgtgacaaaaggctggctacttcaatctctcttgttttctcactttcatttcttcttttcaattttggtctct-------aataacaaatatatacta 54572845  T
Q  208 agttccca--aacatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatga 305  Q
    ||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  54572846 agttcccatgagcatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgacttttgtatcttggagggtattagctatga 54572945  T
Q  306 gacctactgcatcggggtggtgaaatactcttaagtcc 343  Q
    |||||||||||||| | |||||||||||||||||||||    
T  54572946 gacctactgcatcgagatggtgaaatactcttaagtcc 54572983  T

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Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 191 - 320
Target Start/End: Original strand, 38787029 - 38787158
Alignment:
Q  191 ataacaaatatatattaagtt-cccaaa-catccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctg 288  Q
    ||||||||||||||||||||| |||| | |||| || ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38787029 ataacaaatatatattaagtttcccagagcatctaaaagtggtttctgagactttgttaattcacatgcggtgctagcaagatgtgactgttgtatcctg 38787128  T
Q  289 gagggtattagctatgagacctactgcatcgg 320  Q
    ||| ||| || ||||  |||||||||||||||    
T  38787129 gagagtactaactat--gacctactgcatcgg 38787158  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 4648345 - 4648282
Alignment:
Q  246 taattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacc 309  Q
    ||||||| |||| ||| |||||||| ||||||||||||||||| || ||| |||||||||||||    
T  4648345 taattcatgtgcagtgttagcaagaagtgactgttgtatcctgaagagtactagctatgagacc 4648282  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 24734423 - 24734339
Alignment:
Q  234 ctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatc 318  Q
    ||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24734423 ctgagaccttgctaattcacatgcggtgctagtaagatgtgactgttgtatcctggagagtattagctatgagacctactgcatc 24734339  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 230 - 321
Target Start/End: Complemental strand, 53834068 - 53833977
Alignment:
Q  230 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcggg 321  Q
    ||||||||||| ||| |||||||| ||||||||||| |||| |||| |||||||||||| || |||||||||||||||||||  ||||||||    
T  53834068 gttcctgagaccttgctaattcacatgcggtgctaggaagaagtgattgttgtatcctgcagagtattagctatgagacctatcgcatcggg 53833977  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 320
Target Start/End: Complemental strand, 16196840 - 16196750
Alignment:
Q  230 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg 320  Q
    |||| |||||| |||||||||||| |||||||||||||||| |||| ||||||||| ||||  ||| ||||||||| ||| || |||||||    
T  16196840 gttcatgagaccttgttaattcacatgcggtgctagcaagaagtgattgttgtatcatggaaagtactagctatgaaaccaaccgcatcgg 16196750  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 3083783 - 3083846
Alignment:
Q  248 attcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagaccta 311  Q
    |||||| |||||||||||||||| ||||||| ||||| ||| || |||||||||||||||||||    
T  3083783 attcacatgcggtgctagcaagaagtgactgctgtattctgaagagtattagctatgagaccta 3083846  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 53837662 - 53837576
Alignment:
Q  234 ctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg 320  Q
    ||||||| ||| |||||||  |||||||||||||| | |||| |||||||||||| || |||||| |||||||| |||  |||||||    
T  53837662 ctgagaccttgctaattcatatgcggtgctagcaaaaagtgattgttgtatcctgcagagtattaactatgagatctatcgcatcgg 53837576  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 312
Target Start/End: Complemental strand, 7910381 - 7910318
Alignment:
Q  249 ttcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctac 312  Q
    ||||| ||||||| |||||||| ||||||||||||||||| || ||| |||| |||||| ||||    
T  7910381 ttcacatgcggtgttagcaagaagtgactgttgtatcctgaagagtactagccatgagatctac 7910318  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 190 - 320
Target Start/End: Original strand, 27648308 - 27648440
Alignment:
Q  190 aataacaaatatatattaagttccca--aacatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcct 287  Q
    ||||||||||||||| ||||||||||  | ||||||  ||| |||  |||||| |||||||| || ||||||||||||||||| | ||||||||||||||    
T  27648308 aataacaaatatataataagttcccatgagcatccataagtggtttttgagaccttgttaatccatgtgcggtgctagcaagaagcgactgttgtatcct 27648407  T
Q  288 ggagggtattagctatgagacctactgcatcgg 320  Q
    |||| |||||||||||||||||||  |||||||    
T  27648408 ggagagtattagctatgagacctatcgcatcgg 27648440  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 44686295 - 44686206
Alignment:
Q  231 ttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg 320  Q
    |||||||||| ||| |||| |||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||  |||||||    
T  44686295 ttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcgg 44686206  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 190 - 321
Target Start/End: Complemental strand, 36339113 - 36338980
Alignment:
Q  190 aataacaaatatatattaagttccca--aacatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcct 287  Q
    ||||||||||||||| |||||| |||  | ||| ||| ||| ||| ||||||| ||  |||||||| ||||||||||||||||  |||||||||||||||    
T  36339113 aataacaaatatatactaagtttccatgagcattcaaaagtggtttctgagaccttactaattcacatgcggtgctagcaagaactgactgttgtatcct 36339014  T
Q  288 ggagggtattagctatgagacctactgcatcggg 321  Q
    |||| ||| |||| | |||| |||||||||||||    
T  36339013 ggagagtactagccacgagatctactgcatcggg 36338980  T

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Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 181 - 320
Target Start/End: Original strand, 47833759 - 47833896
Alignment:
Q  181 ctaataacaaataacaaatatatattaagttccca--aacatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactg 278  Q
    |||||||||||||||||||   ||| |||||||||  | ||||||  ||| ||| ||||||| | |||||| |||||||||||||||||||| | |||||    
T  47833759 ctaataacaaataacaaat---tat-aagttcccatgagcatccataagtggtttctgagacctcgttaatccacgtgcggtgctagcaagaagcgactg 47833854  T
Q  279 ttgtatcctggagggtattagctatgagacctactgcatcgg 320  Q
    |||||| |||||| ||||||||||||||||||| ||||||||    
T  47833855 ttgtattctggagagtattagctatgagacctattgcatcgg 47833896  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 2079213 - 2079112
Alignment:
Q  217 acatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgca 316  Q
    |||||||| ||| |||| |||||| ||| ||||| |||||||||| ||| |||| ||||||||||||||||||||  |||||||||||||||| || |||    
T  2079213 acatccaaaagtggttcatgagaccttgctaatttacgtgcggtgttagtaagacgtgactgttgtatcctggagaatattagctatgagaccaaccgca 2079114  T
Q  317 tc 318  Q
    ||    
T  2079113 tc 2079112  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 25588693 - 25588774
Alignment:
Q  230 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctac 312  Q
    |||| |||||| ||| ||||||||||||||||||||||||| ||||| | ||||| |||||| ||| ||||||||||| ||||    
T  25588693 gttcatgagaccttgctaattcacgtgcggtgctagcaagaagtgaccg-tgtattctggagagtactagctatgagatctac 25588774  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 230 - 320
Target Start/End: Original strand, 24542657 - 24542747
Alignment:
Q  230 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg 320  Q
    |||| |||||| ||| |||||||||||||||||||||||||| ||| |||||||| |||||| ||| ||||||||||| | || |||||||    
T  24542657 gttcatgagaccttgctaattcacgtgcggtgctagcaagatatgattgttgtattctggagagtactagctatgagatcaaccgcatcgg 24542747  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 320
Target Start/End: Original strand, 15051516 - 15051602
Alignment:
Q  234 ctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggag-ggtattagctatgagacctactgcatcgg 320  Q
    ||||||| ||| |||| |||||||||||||||||||| | ||||||| ||| ||||||  ||||||||||||||| |||  |||||||    
T  15051516 ctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgtt-tattctggagaagtattagctatgagatctatcgcatcgg 15051602  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 33545068 - 33544976
Alignment:
Q  218 catccaaga-gtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacc 309  Q
    ||||||||| || |||||||| | |||  ||||||||||||| ||||||||||||||||||| |||||| ||||| ||| |||||||||||||    
T  33545068 catccaagaagttgttcctgatatttttctaattcacgtgcgatgctagcaagatgtgactgctgtatcatggagagtactagctatgagacc 33544976  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 33827499 - 33827575
Alignment:
Q  235 tgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagaccta 311  Q
    |||||| ||| |||| |||||||||||||||||||| | || ||||||||||||||| |||||| ||||||||||||    
T  33827499 tgagaccttgctaatccacgtgcggtgctagcaagaagcgattgttgtatcctggagagtattatctatgagaccta 33827575  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 17895633 - 17895707
Alignment:
Q  235 tgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacc 309  Q
    |||||| ||| || |||| |||||||| |||||||| |||| ||||||||||||||| ||| ||||| |||||||    
T  17895633 tgagaccttgctagttcatgtgcggtgttagcaagaagtgattgttgtatcctggagagtactagctgtgagacc 17895707  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 14802777 - 14802849
Alignment:
Q  231 ttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctat 303  Q
    ||||||| || ||| |||||||||||| |||||||||||| |||  ||||||||||||||| |||||||||||    
T  14802777 ttcctgaaaccttgctaattcacgtgcagtgctagcaagaagtggttgttgtatcctggagagtattagctat 14802849  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 31984797 - 31984873
Alignment:
Q  231 ttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacc 309  Q
    |||||||||| ||||||||||||| ||| ||||||||| |  |||||||||||||||| |||| | |||||||||||||    
T  31984797 ttcctgagaccttgttaattcacgcgcgatgctagcaaaa--tgactgttgtatcctgtagggcactagctatgagacc 31984873  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 353019 - 353093
Alignment:
Q  246 taattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg 320  Q
    ||||||||||||| | ||||||||| |||| | ||||||||||||| ||||||||| |||||||||  |||||||    
T  353019 taattcacgtgcgatactagcaagaagtgattattgtatcctggagagtattagctgtgagacctatcgcatcgg 353093  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 12273588 - 12273669
Alignment:
Q  230 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagaccta 311  Q
    |||| |||||| ||| |||||||| || ||||||||||||| |||| |||||||||||  || |||||| ||||||||||||    
T  12273588 gttcatgagaccttgctaattcacatgtggtgctagcaagaagtgattgttgtatcctaaagagtattaactatgagaccta 12273669  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 807670 - 807725
Alignment:
Q  230 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatc 285  Q
    |||| |||||| |||||||||||||||||||||||| || |  |||||||||||||    
T  807670 gttcatgagaccttgttaattcacgtgcggtgctagtaaaaaatgactgttgtatc 807725  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 31405771 - 31405733
Alignment:
Q  246 taattcacgtgcggtgctagcaagatgtgactgttgtat 284  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  31405771 taattcacgtgcggtgttagcaagaagtgactgttgtat 31405733  T

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