View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16064_low_15 (Length: 344)
Name: NF16064_low_15
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 14194002 - 14194319
Alignment:
| Q |
17 |
gtgttttcttgcctcccaaaattttctagtgctcaaatttaattactataaattatcgcttcatgagtttggttataatttgagggttttcttctactca |
116 |
Q |
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| T |
14194002 |
gtgttttcttgcctccctaaattttctagtgctcagatttaattactataaattaccgcttcatgagtttggttataatttgagggttttcttctactaa |
14194101 |
T |
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| Q |
117 |
ttggagactacaaatttacaataattgttcataaagataagatagtttgttgcactgctgagcagactcaatattttattttatggaaaaggttacactt |
216 |
Q |
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| T |
14194102 |
ttggagactacaaatttacaataattgttcataaagataagatagtttgttgcactgctcagcagactcaatattttattttaaggaaaaggttacactt |
14194201 |
T |
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| Q |
217 |
acattccaaatttaatgttctacgatggaggatgtattcttaatcacaatcttgacgacaaggttgtcgtgaacaaatacacccagtactttcatcaagt |
316 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||| |
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| T |
14194202 |
acattccaaatttaatgttctaggatggaggatgtattcttaatcacaatcttgacgacaacgttgttttgaacaaatacatgcagtattttcatcaagt |
14194301 |
T |
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| Q |
317 |
tcatcacacattcctatg |
334 |
Q |
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|||||||||||||||||| |
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| T |
14194302 |
tcatcacacattcctatg |
14194319 |
T |
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