View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16064_low_17 (Length: 318)
Name: NF16064_low_17
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 48900048 - 48899755
Alignment:
| Q |
18 |
ctatctatgtttgttttcttgtttgtgatgaaaagaaaaactgtcttacccatttattgggtttgaagttaattttataatggtgcgggtgttatacagg |
117 |
Q |
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| T |
48900048 |
ctatctatgtttgttttcttgtttgtgatgaaaagaaaaactgtcttacccatttattgggtttgaagttaattttataatggtgcgggtgttatacagg |
48899949 |
T |
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| Q |
118 |
gcagttagattggaacaatacgtcgtttaagctaggagttgggtgtggtttgctatatgtgattgcaacaactaaaaatgagcttagcaagatggttgag |
217 |
Q |
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| T |
48899948 |
gcagttagattggaacaatacgtcgtttaagctaggagttgggtgtggtttgctatatgtgattgcaacaactaaaaatgagcttagcaagatggttgag |
48899849 |
T |
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| Q |
218 |
ttgcggaaagaaatggaaatgatccttcaaaacatgaaaggggaacttcaaagtaaagatgtacttgttaagtcattgaaacaatgtgatgatg |
311 |
Q |
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| T |
48899848 |
ttgcggaaagaaatggaaataatccttcaaaacatgaaaggggaacttcaaagtaaagatgtacttgttaagtcattgaaacaatgtgatgatg |
48899755 |
T |
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