View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16064_low_18 (Length: 287)
Name: NF16064_low_18
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 1715874 - 1715589
Alignment:
| Q |
1 |
cttcacatataatgtgtgtgaatctactcattagactatttaataaaaaattatattaaccgttcaaatatcgttaaaaaatgtacttgctctggaaata |
100 |
Q |
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| T |
1715874 |
cttcatatataatgtgtgtgaatctactcattagactatttaataaaaaattatattaaccgttcaaatatcgttaaaaaatgtacttgctctgtaaata |
1715775 |
T |
|
| Q |
101 |
aattgagtttgaagtaagcagtattttt-aaaacaataatactaaatagggttgaatttaacaaatttttcttatatttgagaccacaatttttgctgac |
199 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1715774 |
aattgagtttgaagtaagcagtatttttaaaaataataatactaaatagggttgaatttaacaaatttttcttatatttgagaccacaa-ttttgctgat |
1715676 |
T |
|
| Q |
200 |
aaataagaatgaagggattac-nnnnnnnnnnnnnngccaaaagagagactacttccacaacccatcttgtttctattttcttggac |
285 |
Q |
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| T |
1715675 |
aaataagaatgaagggattactttttttttttttttgccaaaagagagactacttccacaacccatcttgtttctattttgttggac |
1715589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 8740746 - 8740718
Alignment:
| Q |
165 |
tttttcttatatttgagaccacaattttt |
193 |
Q |
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| T |
8740746 |
tttttcttatatttgagaccacaattttt |
8740718 |
T |
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