View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16064_low_19 (Length: 285)
Name: NF16064_low_19
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 53580531 - 53580270
Alignment:
| Q |
18 |
caaatgggtgcagatgcatatgagacaccctaaatagaataaaataaaattaaagagtgcaaagagtcggaggatataatgtacaaacatgtccatgtat |
117 |
Q |
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| T |
53580531 |
caaatgggtgcagatgcatatgagacaccctaaatagaataaaataaaattaaagagtgcaaagtgtcggaggatataatgtacaaatatgtccatgtat |
53580432 |
T |
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| Q |
118 |
aaaattgaacgttcttttttcgccaaatgtatgctaaatatcatttgagt-----agaggatcattaatctacaatttataagaatttgatttgttcttt |
212 |
Q |
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| T |
53580431 |
aaaattgaacgttcttttttcgccaaatgtatgctaaatatcatttgagtagagtagaggatcattaatctacaatttataagaatttgatttgttcttt |
53580332 |
T |
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| Q |
213 |
cttgtcttacagtcgatgataccaaaactgttgatttccttcctggttttcctgagcttcat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53580331 |
cttgtcttacagtcgatgataccaaaactgttgatttccttcctggttttcctgagcttcat |
53580270 |
T |
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