View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16064_low_20 (Length: 265)

Name: NF16064_low_20
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16064_low_20
NF16064_low_20
[»] chr1 (3 HSPs)
chr1 (18-251)||(9373938-9374171)
chr1 (55-248)||(9369456-9369653)
chr1 (55-240)||(9390671-9390860)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 9374171 - 9373938
Alignment:
Q  18 taattaacacaaaaaagattcacaacatttgcgaataatttcatatctcttgctgcccactcgattatgtcaaaatgaaacttcctgcatgataaagaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9374171 taattaacacaaaaaagattcacaacatttgcgaataatttcatatctcttgctgcccactcgattatgtcaaaatgaaacttcctgcatgataaagaaa 9374072  T
Q  118 acgaaacttctgcgcttctttcccgtttccaccattttactatgcaattggtttattagaagactaattgttcgtcgaattgtcatcataaaacatattt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9374071 acgaaacttctgcgcttctttcccgtttccaccattttactatggaattggtttattagaagactaattgttcgtcgaattgtcatcataaaacatattt 9373972  T
Q  218 gtcaatacctctccctttcttatatctttcacag 251  Q
    ||||||||||||||||||||||||||||||||||    
T  9373971 gtcaatacctctccctttcttatatctttcacag 9373938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 55 - 248
Target Start/End: Complemental strand, 9369653 - 9369456
Alignment:
Q  55 atttcatatctcttgctgcccactcgattatgtcaaaatgaaacttcctgcatgataaagaaaacgaaacttc----tgcgcttctttcccgtttccacc 150  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||  | ||||| |||  ||||||||    |  ||||||||||||||||||||    
T  9369653 atttcatatcccttgctgcccactccattatgtcaaaatgaaacttcctgtctcataaaaaaattgaaacttcctactctgcttctttcccgtttccacc 9369554  T
Q  151 attttactatgcaattggtttattagaagactaattgttcgtcgaattgtcatcataaaacatatttgtcaatacctctccctttcttatatctttca 248  Q
    ||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9369553 attttactatgaaattgatttattggaagactaattgttcgtggaattgtcatcataaaacatatttgtcaatacctctccctttcttatatttttca 9369456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 9390860 - 9390671
Alignment:
Q  55 atttcatatctcttgctgcccactcgattatgtcaaaatgaaacttcctgcatgataaagaaaacgaaacttc----tgcgcttctttcccgtttccacc 150  Q
    ||||||||||||||||| | ||||| ||||||||||| |||||||||||    ||||||  ||| ||||||||    || |||||||||||||||||||     
T  9390860 atttcatatctcttgcttctcactcaattatgtcaaactgaaacttcctatccgataaaagaaatgaaacttcctactgtgcttctttcccgtttccaca 9390761  T
Q  151 attttactatgcaattggtttattagaagactaattgttcgtcgaattgtcatcataaaacatatttgtcaatacctctccctttcttat 240  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  9390760 attttactatgaaattggtttattagaaaactaattgttcgtcgaattgtcgtcataaaatatatttgtcaatacctctccctttcttat 9390671  T

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