View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16064_low_21 (Length: 265)
Name: NF16064_low_21
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_low_21 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 100498 - 100736
Alignment:
| Q |
11 |
ggagtatgatccagaagcaggtagtgaagaagaaagagcacaagttgaagaagctcgtaagaatttctatgacaacagattcaaggtcaagccctgtggt |
110 |
Q |
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| T |
100498 |
ggagtatgatccagaagcaggtagtgaagaagaaagagcacaagttgaagaagctcgtaagaatttctatgacaacagattcaaggtcaagccctgtggt |
100597 |
T |
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| Q |
111 |
gacctcctatggcgttttcaggtacttaattactactactacttatcattatcatattcaataatcatcatttcaccaccgacactactaaatgaatatg |
210 |
Q |
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| T |
100598 |
gacctcctatggcgttttcaggtacttaattactactacctatcattatcatcatattcaataatcatcatttcaccaccgacactactaaatgaatatg |
100697 |
T |
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| Q |
211 |
aatacataccattctatttgtatggtttaccctccaact |
249 |
Q |
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| T |
100698 |
aatacataccattctatttgtatggtttaccctccaact |
100736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 154377 - 154501
Alignment:
| Q |
11 |
ggagtatgatccagaagcaggtagtgaagaagaaagagcacaagttgaagaagctcgtaagaatttctatgacaacagattcaaggtcaagccctgtggt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||| || ||| |||||||| |
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| T |
154377 |
ggagtatgatccagaagcaggtagtgaagaagaaagagcacaagttgaagaagctcgtaagaatttctataataaccgcttcaatgttaagacctgtggt |
154476 |
T |
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| Q |
111 |
gacctcctatggcgttttcaggtac |
135 |
Q |
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| T |
154477 |
gatctcctttggcgttttcaggtac |
154501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 10307777 - 10307657
Alignment:
| Q |
18 |
gatccagaagcaggtagtgaagaagaaagagcacaagttgaagaagctcgtaagaatttctatgacaacagattcaaggtcaagccctgtggtgacctcc |
117 |
Q |
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| T |
10307777 |
gatccagaagcaggtagtgaagaagagagagctcaagttgaagaagttcgtaagaatttctataataaccgtttcaaggttaagacctgtggtgacctcc |
10307678 |
T |
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| Q |
118 |
tatggcgttttcaggtactta |
138 |
Q |
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| T |
10307677 |
tttcgcgttttcaggtactta |
10307657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 102286 - 102162
Alignment:
| Q |
11 |
ggagtatgatccagaagcaggtagtgaagaagaaagagcacaagttgaagaagctcgtaagaatttctatgacaacagattcaaggtcaagccctgtggt |
110 |
Q |
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||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||| ||| |
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| T |
102286 |
ggagtatgatccagaagcaggtagtgaagaagagagggcccaagttgaagaagctcgtaagaatttctataacaaccgcttcaaagtcaagccctgcggt |
102187 |
T |
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| Q |
111 |
gacctcctatggcgttttcaggtac |
135 |
Q |
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| T |
102186 |
gatctcctctggcgttttcaggtac |
102162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 13041297 - 13041421
Alignment:
| Q |
11 |
ggagtatgatccagaagcaggtagtgaagaagaaagagcacaagttgaagaagctcgtaagaatttctatgacaacagattcaaggtcaagccctgtggt |
110 |
Q |
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||||||||||||| ||||||||| | || || |||||||||||||||||||||||| ||||||| ||| ||||| | || || ||||||| ||| || |
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| T |
13041297 |
ggagtatgatccaaaagcaggtactttggaggagagagcacaagttgaagaagctcgtcagaatttttataacaaccgctttaaagtcaagctatgtagt |
13041396 |
T |
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| Q |
111 |
gacctcctatggcgttttcaggtac |
135 |
Q |
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| T |
13041397 |
gacctcctttggcgttttcaggtac |
13041421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 12143092 - 12143011
Alignment:
| Q |
54 |
gttgaagaagctcgtaagaatttctatgacaacagattcaaggtcaagccctgtggtgacctcctatggcgttttcaggtac |
135 |
Q |
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||||||||||||||| | ||||||||| |||| |||| ||||| ||||| ||||| |||||||| ||||| |||||||||| |
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| T |
12143092 |
gttgaagaagctcgtcacaatttctatatcaaccgatttaaggttaagccatgtggcgacctcctttggcgctttcaggtac |
12143011 |
T |
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