View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16064_low_23 (Length: 249)
Name: NF16064_low_23
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 47333723 - 47333484
Alignment:
| Q |
1 |
gattgtcgtgattgcagtataaaagaaaaatatga--ttcattgaattgaatatcc---ataaacaaaacaggataattaaaattgatcatgaattcagc |
95 |
Q |
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| T |
47333723 |
gattgtcgtgattgcagtataaaagacaaatatgaaattcattgaattgaatatcccatataaacaaaacaggataattaaaattgatcatgaattcagc |
47333624 |
T |
|
| Q |
96 |
aaccccatctccaatttattacaaaaatcaacaataaaattacctaatgaccctcttcaaatcaaacaagaaaagaagcaatacgtttgaccatatcaat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333623 |
aaccccatctccaatttattacaaaaatcaacaataaaattacctaatgaccctcttcaaatcaaacaagaaaagaagcaatacgtttgaccatatcaat |
47333524 |
T |
|
| Q |
196 |
agaattctgagtttcaggatgataaatctgaaaacaatgt |
235 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
47333523 |
agaactctgagtttcaggatgataaatctgaaaacaatgt |
47333484 |
T |
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