View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16064_low_24 (Length: 243)

Name: NF16064_low_24
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16064_low_24
NF16064_low_24
[»] chr5 (4 HSPs)
chr5 (68-191)||(39074274-39074397)
chr5 (13-60)||(900991-901038)
chr5 (1-65)||(30840004-30840068)
chr5 (192-243)||(16049622-16049673)
[»] chr7 (5 HSPs)
chr7 (1-60)||(38174714-38174773)
chr7 (13-61)||(6494849-6494897)
chr7 (13-61)||(45849426-45849474)
chr7 (192-243)||(26762385-26762436)
chr7 (192-229)||(2704152-2704189)
[»] chr4 (5 HSPs)
chr4 (1-61)||(2728635-2728695)
chr4 (13-59)||(33152453-33152499)
chr4 (192-243)||(35346300-35346351)
chr4 (1-61)||(3684825-3684885)
chr4 (191-243)||(33017688-33017740)
[»] chr3 (4 HSPs)
chr3 (13-61)||(30074973-30075021)
chr3 (191-231)||(21219662-21219702)
chr3 (17-61)||(26847675-26847719)
chr3 (13-56)||(40034833-40034876)
[»] chr6 (6 HSPs)
chr6 (1-55)||(29396538-29396592)
chr6 (1-58)||(22996066-22996123)
chr6 (1-58)||(23792277-23792334)
chr6 (13-60)||(7045131-7045178)
chr6 (1-55)||(18141476-18141530)
chr6 (10-51)||(21203236-21203277)
[»] chr1 (1 HSPs)
chr1 (11-61)||(9388664-9388714)
[»] chr8 (5 HSPs)
chr8 (188-243)||(32965907-32965962)
chr8 (192-243)||(7253158-7253209)
chr8 (197-243)||(21276246-21276292)
chr8 (17-59)||(24512327-24512369)
chr8 (10-59)||(43899111-43899160)
[»] scaffold0040 (1 HSPs)
scaffold0040 (192-243)||(68253-68304)
[»] chr2 (1 HSPs)
chr2 (17-59)||(33538285-33538327)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 39074274 - 39074397
Alignment:
Q  68 aaaaggtgtgacccacatcacataccacaccctccttgttttccgtgcaaaaccctttttaattggctgaaattgtttttgggaagttctcggaataaaa 167  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| |||||||||| |  | ||||    
T  39074274 aaaaggtgtgacccacatcacacaccacaccctccttgttttccatgcaaagccctttttaattggttgaaattgttttcgggaagttcttgagacaaaa 39074373  T
Q  168 tcagtcgggagatatagcaatgcc 191  Q
    ||||||||||||||||||||||||    
T  39074374 tcagtcgggagatatagcaatgcc 39074397  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 900991 - 901038
Alignment:
Q  13 gttgttgcattggttgttaaattttagatgtacaaataacatagctct 60  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||    
T  900991 gttgttgcattggttgtccaattttagatgtacaaataacatagctct 901038  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30840004 - 30840068
Alignment:
Q  1 acaaacttgaaggttgttgcattggttgttaaattttagatgtacaaataacatagctcttgcta 65  Q
    ||||| || ||||||||| ||||| ||||  ||||||| |||||||||||| |||||||||||||    
T  30840004 acaaagttaaaggttgttccattgattgtccaattttatatgtacaaataatatagctcttgcta 30840068  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 16049622 - 16049673
Alignment:
Q  192 ggcaaaggctacggtagacaacctctttaggtctcctaccaaaggagacttg 243  Q
    |||||||||||||||||  |||||||||||||||||| ||  ||||||||||    
T  16049622 ggcaaaggctacggtaggtaacctctttaggtctcctgccgtaggagacttg 16049673  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38174714 - 38174773
Alignment:
Q  1 acaaacttgaaggttgttgcattggttgttaaattttagatgtacaaataacatagctct 60  Q
    ||||| || ||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  38174714 acaaagttaaaggttgttgcattggttgtccaattttagatgtacaaataacatagctct 38174773  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 6494849 - 6494897
Alignment:
Q  13 gttgttgcattggttgttaaattttagatgtacaaataacatagctctt 61  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  6494849 gttgttgcattggttgtccaattttagatgtacaaataacatagctctt 6494897  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 45849474 - 45849426
Alignment:
Q  13 gttgttgcattggttgttaaattttagatgtacaaataacatagctctt 61  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||    
T  45849474 gttgttgcattgattgtcaaattttagatgtacaaataacatagctctt 45849426  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 26762436 - 26762385
Alignment:
Q  192 ggcaaaggctacggtagacaacctctttaggtctcctaccaaaggagacttg 243  Q
    ||||||||||||||||| | |||||||| |||||||||||  ||||||||||    
T  26762436 ggcaaaggctacggtaggcgacctctttgggtctcctaccgtaggagacttg 26762385  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 2704152 - 2704189
Alignment:
Q  192 ggcaaaggctacggtagacaacctctttaggtctccta 229  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  2704152 ggcaaaggctacggtaggcgacctctttaggtctccta 2704189  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2728635 - 2728695
Alignment:
Q  1 acaaacttgaaggttgttgcattggttgttaaattttagatgtacaaataacatagctctt 61  Q
    ||||| || ||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  2728635 acaaagttaaaggttgttgcattggttgtccaattttaaatgtacaaataacatagctctt 2728695  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 33152499 - 33152453
Alignment:
Q  13 gttgttgcattggttgttaaattttagatgtacaaataacatagctc 59  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  33152499 gttgttgcattggttgtccaattttagatgtacaaataacatagctc 33152453  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 35346300 - 35346351
Alignment:
Q  192 ggcaaaggctacggtagacaacctctttaggtctcctaccaaaggagacttg 243  Q
    ||||||||||||||||| | ||||||||||||||||||||  ||||||||||    
T  35346300 ggcaaaggctacggtaggcgacctctttaggtctcctaccgtaggagacttg 35346351  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3684825 - 3684885
Alignment:
Q  1 acaaacttgaaggttgttgcattggttgttaaattttagatgtacaaataacatagctctt 61  Q
    ||||| || ||||||||||||||| || |  ||||||||||||||| ||||||||||||||    
T  3684825 acaaagttaaaggttgttgcattgattatccaattttagatgtacatataacatagctctt 3684885  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 33017688 - 33017740
Alignment:
Q  191 cggcaaaggctacggtagacaacctctttaggtctcctaccaaaggagacttg 243  Q
    |||||||||||||||||| | |||||||| |||||||||||  ||||||||||    
T  33017688 cggcaaaggctacggtaggcgacctctttgggtctcctaccgtaggagacttg 33017740  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 30074973 - 30075021
Alignment:
Q  13 gttgttgcattggttgttaaattttagatgtacaaataacatagctctt 61  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  30074973 gttgttgcattggttgtccaattttagatgtacaaataacatagctctt 30075021  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 21219662 - 21219702
Alignment:
Q  191 cggcaaaggctacggtagacaacctctttaggtctcctacc 231  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  21219662 cggcaaaggctacggtaggcaacctctttaggtctcctacc 21219702  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 26847719 - 26847675
Alignment:
Q  17 ttgcattggttgttaaattttagatgtacaaataacatagctctt 61  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  26847719 ttgcattggttgtctaattttagatgtacaaataacatagctctt 26847675  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 40034833 - 40034876
Alignment:
Q  13 gttgttgcattggttgttaaattttagatgtacaaataacatag 56  Q
    |||||||||||||||||  ||||||| |||||||||||||||||    
T  40034833 gttgttgcattggttgtccaattttaaatgtacaaataacatag 40034876  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29396538 - 29396592
Alignment:
Q  1 acaaacttgaaggttgttgcattggttgttaaattttagatgtacaaataacata 55  Q
    ||||| || ||||||||||||||||||||  ||||||||||||||||||||||||    
T  29396538 acaaagttaaaggttgttgcattggttgtccaattttagatgtacaaataacata 29396592  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22996066 - 22996123
Alignment:
Q  1 acaaacttgaaggttgttgcattggttgttaaattttagatgtacaaataacatagct 58  Q
    ||||| || ||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  22996066 acaaagttaaaggttgttacattggttgtccaattttagatgtacaaataacatagct 22996123  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23792334 - 23792277
Alignment:
Q  1 acaaacttgaaggttgttgcattggttgttaaattttagatgtacaaataacatagct 58  Q
    ||||| || ||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  23792334 acaaagttaaaggttgttacattggttgtccaattttagatgtacaaataacatagct 23792277  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 7045178 - 7045131
Alignment:
Q  13 gttgttgcattggttgttaaattttagatgtacaaataacatagctct 60  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||    
T  7045178 gttgttgcattggttgtcaaattttagttgtacacataacatagctct 7045131  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18141476 - 18141530
Alignment:
Q  1 acaaacttgaaggttgttgcattggttgttaaattttagatgtacaaataacata 55  Q
    ||||| || |||||||||| |||||||||  ||||||| ||||||||||||||||    
T  18141476 acaaagttaaaggttgttgtattggttgtccaattttaaatgtacaaataacata 18141530  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 21203277 - 21203236
Alignment:
Q  10 aaggttgttgcattggttgttaaattttagatgtacaaataa 51  Q
    ||||||||||||||||||||  ||||||| ||||||||||||    
T  21203277 aaggttgttgcattggttgtccaattttaaatgtacaaataa 21203236  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 9388664 - 9388714
Alignment:
Q  11 aggttgttgcattggttgttaaattttagatgtacaaataacatagctctt 61  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  9388664 aggttgttgcattggttgttcaattttagaggtacaaataacatagttctt 9388714  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 32965907 - 32965962
Alignment:
Q  188 tgccggcaaaggctacggtagacaacctctttaggtctcctaccaaaggagacttg 243  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||  ||||||||||    
T  32965907 tgccggcaaaggctacggtaggcaatctcattaggtctcctaccgtaggagacttg 32965962  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 7253209 - 7253158
Alignment:
Q  192 ggcaaaggctacggtagacaacctctttaggtctcctaccaaaggagacttg 243  Q
    ||||||||||||||||| | | ||||||||||||||||||  ||||||||||    
T  7253209 ggcaaaggctacggtaggcgatctctttaggtctcctaccgtaggagacttg 7253158  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 21276292 - 21276246
Alignment:
Q  197 aggctacggtagacaacctctttaggtctcctaccaaaggagacttg 243  Q
    |||||||||||| |||||||||| |||||||||||  ||||||||||    
T  21276292 aggctacggtaggcaacctctttgggtctcctaccgtaggagacttg 21276246  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 24512327 - 24512369
Alignment:
Q  17 ttgcattggttgttaaattttagatgtacaaataacatagctc 59  Q
    |||||||||||||  ||||||| ||||||||||||||||||||    
T  24512327 ttgcattggttgtccaattttaaatgtacaaataacatagctc 24512369  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 43899111 - 43899160
Alignment:
Q  10 aaggttgttgcattggttgttaaattttagatgtacaaataacatagctc 59  Q
    |||| ||||||||| |||||| |||||| | |||||||||||||||||||    
T  43899111 aagggtgttgcattagttgttcaattttggttgtacaaataacatagctc 43899160  T

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Target: scaffold0040 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 68253 - 68304
Alignment:
Q  192 ggcaaaggctacggtagacaacctctttaggtctcctaccaaaggagacttg 243  Q
    |||| |||||||||||| | ||||||||||||||||||||  ||||||||||    
T  68253 ggcataggctacggtaggcgacctctttaggtctcctaccgtaggagacttg 68304  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 33538285 - 33538327
Alignment:
Q  17 ttgcattggttgttaaattttagatgtacaaataacatagctc 59  Q
    |||||||||||||  ||||||| ||||||||||||||||||||    
T  33538285 ttgcattggttgtccaattttaaatgtacaaataacatagctc 33538327  T

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