View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16064_low_26 (Length: 201)
Name: NF16064_low_26
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 14085519 - 14085586
Alignment:
| Q |
86 |
ctcatgagctcagcctctatggagccatccatgatgaggtctccaaaccct--tatgttatttgggat |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14085519 |
ctcatgagctcagcctctatggagccatccatgatgaggtctccaaacccttgtatgttatttgggat |
14085586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 14074915 - 14074962
Alignment:
| Q |
87 |
tcatgagctcagcctctatggagccatccatgatgaggtctccaaacc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14074915 |
tcatgagctcagcctctatggagccatccatgatgaggtctccaaacc |
14074962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 14082251 - 14082298
Alignment:
| Q |
87 |
tcatgagctcagcctctatggagccatccatgatgaggtctccaaacc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14082251 |
tcatgagctcagcctctatggagccatccatgatgatgtctccaaacc |
14082298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 14086100 - 14086147
Alignment:
| Q |
87 |
tcatgagctcagcctctatggagccatccatgatgaggtctccaaacc |
134 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
14086100 |
tcatgagctcaacctctaccaagccatccatgatgaggtctccaaacc |
14086147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 14085606 - 14085640
Alignment:
| Q |
152 |
tttgattgcttatttttactagtattaatgttctt |
186 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14085606 |
tttcattgcttatttttactagtattaatgttctt |
14085640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University