View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16064_low_5 (Length: 570)
Name: NF16064_low_5
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 12 - 554
Target Start/End: Complemental strand, 53175387 - 53174852
Alignment:
| Q |
12 |
acagaggcatatgttacaaagcacttaaacaaatcaactcagtgcatttttgttgcatcataaggatatgatctaaaaatcatgtcaggattccctcaac |
111 |
Q |
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| T |
53175387 |
acagaggcatatgttacaaagcacttaaacaaatcaactcagtgcatttttgttgcatcataaggatatgatctaaaaatcatgtcaggattccctcaac |
53175288 |
T |
|
| Q |
112 |
aaactctacaactttctgaccaattctcctaaaactgtatttataaacaggttaatattaacagaagtagaaagatacacacaatttattatgaaatcct |
211 |
Q |
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| T |
53175287 |
aaactctacaactttctgaccaattctcctaaaactgtatttataaacagggtaatattaacagaagtagaaagatacacacaatttattatgaaatcct |
53175188 |
T |
|
| Q |
212 |
ctcatccatttctttaaaagttgacttgaacatcaaagtattttcatctacaatcctccacaagaatcgtggtattctagtaaaccaaataggtagcaaa |
311 |
Q |
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| T |
53175187 |
ctcatccatttctttaaaagttgacttgaacatcaaagtattttcatctacaatcctccacaagaatcgtggtattctagtaaaccaaataggtagcaaa |
53175088 |
T |
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| Q |
312 |
gtatgtatgatgtatccttcctgtcattctagcaataggccaactatgtacaacaagtatttgtcatatattcggatttagctatatttttgctacattt |
411 |
Q |
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| T |
53175087 |
at-------atgtatccttcctgtcattctagcaataggccaactatgtacaacaagtattcgtcatatattcggatttagctatatttttgctacattt |
53174995 |
T |
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| Q |
412 |
ccacatcagtccaaataaaatggccacatttgatgtgtaaccttctatcttgaattggtcgaagaggaattgaagtgataaaaatgtttaagctaccccg |
511 |
Q |
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| T |
53174994 |
ccacatcagtccaaataaaatggccacatttgatgtgtaaccttctatcttgaattggtcgaagaggaattgaagtgataacaatgtttaagctaccccg |
53174895 |
T |
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| Q |
512 |
caatcatccgcatcctttcaattccaatatctgagataacatc |
554 |
Q |
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| T |
53174894 |
caatcatccgcatcctttcaattccaatatctgagataacatc |
53174852 |
T |
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