View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16064_low_6 (Length: 452)
Name: NF16064_low_6
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 21 - 436
Target Start/End: Complemental strand, 7298709 - 7298293
Alignment:
| Q |
21 |
agtatagttcaatttttagtgatcacgatatcattataacatcacatctatatatgtgttagttgtttgacctatcattaagcacacaagaacactccat |
120 |
Q |
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| T |
7298709 |
agtatagttcaatttttagtgatcacgatatcattataacatcacatctatatatgtgttagttgtttgacctatcattaagcacacaagaacactccat |
7298610 |
T |
|
| Q |
121 |
caaaagacttagaaaggaaaaactaaagctaatagaaacaagaatggacctggggcaggtagtgcacatgaatggaggtgatggagaaacaagctatgca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7298609 |
caaaagacttagaaaggaaaaactaaagctaatagaaacaagaatggacctggggcaggtagtgcacatgaatggaggtgatggagaaacaagctatgca |
7298510 |
T |
|
| Q |
221 |
aaaaactcatttcatcaggtattag-nnnnnnnnnnnnngtttaacaacaaattttatttaaaaactcaatccctactcaggacgaatagtacaaactaa |
319 |
Q |
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| T |
7298509 |
aaaaactcatttcatcaggtattagttttttttttttttgtttaacaacaaattttatttaaaaactcaatccctactcaggacgaatagtacaaactaa |
7298410 |
T |
|
| Q |
320 |
aacataagatgttagttaattagttaatgcctatggttaatttaaaatgagtaattttgttatcatttgaatccataccatgaaagattagttgtgaaaa |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7298409 |
aacataagatgttagttaattagttaatgcctatggttaatttaaaatgagtaattttgttatcatttgaatccataccatgaaagattagttatgaaaa |
7298310 |
T |
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| Q |
420 |
attaaaaactattttta |
436 |
Q |
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| T |
7298309 |
attaaaaactattttta |
7298293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 7296271 - 7296183
Alignment:
| Q |
144 |
taaagctaatagaaacaagaatggacctggggcaggtagtgcacatgaatggaggtgatggagaaacaagctatgcaaaaaactcattt |
232 |
Q |
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| T |
7296271 |
taaagctaaaagaagcaagaatggacgtggggaagatagtgcacatgaatggaggcgatgggaaaacaagttatgcaaacaactcattt |
7296183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 32710171 - 32710126
Alignment:
| Q |
183 |
tgcacatgaatggaggtgatggagaaacaagctatgcaaaaaactc |
228 |
Q |
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| T |
32710171 |
tgcacatgaatggaggtgttggagaagcaagctatgcaaacaactc |
32710126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 28377947 - 28377903
Alignment:
| Q |
260 |
tttaacaacaaattttatttaaaaactcaatccctactcaggacg |
304 |
Q |
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| T |
28377947 |
tttaacaacaaattttatttaaaaaccaaatccctactcaagacg |
28377903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 54745385 - 54745428
Alignment:
| Q |
185 |
cacatgaatggaggtgatggagaaacaagctatgcaaaaaactc |
228 |
Q |
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| T |
54745385 |
cacatgaatggaggtgagggagatacaagctatgcaaataactc |
54745428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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