View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16064_low_9 (Length: 380)
Name: NF16064_low_9
Description: NF16064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16064_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 57 - 331
Target Start/End: Original strand, 24728588 - 24728862
Alignment:
| Q |
57 |
cattcattacctgtttcatgttcaaccagggttttaaattgtggtcatggtaacagttgtggccacgtcgtgatctttgacattacaaagaatcgcagta |
156 |
Q |
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| T |
24728588 |
cattcattacctgtttcatgttcaaccagtgttttaaattgtggtcatggtaacagttgtggccacgtcgtgatctttgacattgcaaagaatcgcagta |
24728687 |
T |
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| Q |
157 |
aaacacaggcctcaatcgttgttgtgttgtattttccgaaaaatcaaaaactgttatgttgaagcccaaatcatggttgcgaaccttttatttacaaccc |
256 |
Q |
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| T |
24728688 |
aaacacaggcctcaatcgttgttttgttgtattttccgaaaaatcaaaaactgttatgttgaagcccaaatcatggttgcgaaccttttatttacaaccc |
24728787 |
T |
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| Q |
257 |
tattaacctttattcccataagtctgtctttcatgtaaagctttttccacttttatgtgtagtaattagtcagag |
331 |
Q |
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| T |
24728788 |
tattaacctttattcccataagtctgtctttcatgtaaagctttttccacttttacgtgtagtaattagtcagag |
24728862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 24689208 - 24689266
Alignment:
| Q |
82 |
ccagggttttaaattgtggtcatggtaacagttgtggccacgtcgtgatctttgacatt |
140 |
Q |
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| T |
24689208 |
ccagggttttaaatagtggtcgtggcaacagttgtggccacatcgcaatcttggacatt |
24689266 |
T |
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