View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16065_high_16 (Length: 302)

Name: NF16065_high_16
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16065_high_16
NF16065_high_16
[»] chr3 (44 HSPs)
chr3 (1-284)||(10464986-10465269)
chr3 (25-93)||(52937259-52937327)
chr3 (25-83)||(49761383-49761441)
chr3 (25-90)||(3281646-3281711)
chr3 (33-90)||(24095336-24095393)
chr3 (25-90)||(24645432-24645497)
chr3 (25-90)||(39697152-39697217)
chr3 (25-90)||(55400075-55400140)
chr3 (25-89)||(46019538-46019602)
chr3 (25-83)||(24480388-24480446)
chr3 (26-84)||(51343485-51343543)
chr3 (25-90)||(37927135-37927200)
chr3 (25-90)||(46253698-46253763)
chr3 (25-90)||(51465844-51465909)
chr3 (33-95)||(6999254-6999316)
chr3 (25-83)||(21196200-21196258)
chr3 (33-95)||(36412207-36412269)
chr3 (25-90)||(20080148-20080213)
chr3 (25-90)||(26672474-26672539)
chr3 (25-90)||(50206900-50206965)
chr3 (25-90)||(50638281-50638346)
chr3 (25-90)||(54694043-54694108)
chr3 (33-89)||(41281652-41281708)
chr3 (25-92)||(42683903-42683970)
chr3 (33-83)||(26645110-26645160)
chr3 (26-96)||(37410952-37411022)
chr3 (34-95)||(1337768-1337829)
chr3 (26-83)||(3347064-3347121)
chr3 (25-90)||(24482893-24482958)
chr3 (25-90)||(31376696-31376760)
chr3 (25-90)||(34057883-34057948)
chr3 (26-83)||(46094488-46094545)
chr3 (1-83)||(8846534-8846625)
chr3 (1-90)||(44677414-44677512)
chr3 (53-95)||(55282615-55282657)
chr3 (28-93)||(3953402-3953467)
chr3 (25-90)||(36121897-36121962)
chr3 (25-90)||(37508428-37508493)
chr3 (34-83)||(46852069-46852118)
chr3 (26-90)||(1280059-1280123)
chr3 (25-81)||(16675465-16675521)
chr3 (25-77)||(22371267-22371319)
chr3 (25-81)||(29573295-29573351)
chr3 (25-81)||(45754714-45754770)
[»] chr7 (43 HSPs)
chr7 (25-90)||(3062406-3062471)
chr7 (25-89)||(44184490-44184554)
chr7 (25-95)||(10055557-10055627)
chr7 (25-90)||(31844535-31844600)
chr7 (25-93)||(43573470-43573538)
chr7 (25-90)||(13729802-13729867)
chr7 (25-90)||(28036820-28036885)
chr7 (25-93)||(35588818-35588886)
chr7 (25-90)||(3293205-3293270)
chr7 (25-90)||(20482603-20482668)
chr7 (25-90)||(21559874-21559939)
chr7 (25-90)||(43482599-43482664)
chr7 (25-83)||(34855521-34855580)
chr7 (25-91)||(3343259-3343325)
chr7 (25-95)||(7817712-7817782)
chr7 (25-90)||(11352904-11352969)
chr7 (25-90)||(11564969-11565033)
chr7 (25-90)||(41399093-41399158)
chr7 (25-93)||(12645837-12645905)
chr7 (25-93)||(16980373-16980440)
chr7 (25-89)||(21822530-21822594)
chr7 (25-83)||(25067299-25067357)
chr7 (36-90)||(41458683-41458737)
chr7 (25-95)||(42926215-42926285)
chr7 (25-83)||(46812842-46812900)
chr7 (25-90)||(19786009-19786074)
chr7 (25-90)||(32815244-32815309)
chr7 (33-90)||(34757401-34757458)
chr7 (25-90)||(35452503-35452568)
chr7 (33-90)||(44304007-44304064)
chr7 (26-90)||(16708237-16708301)
chr7 (26-90)||(17682473-17682537)
chr7 (25-81)||(46829555-46829611)
chr7 (25-84)||(47495046-47495105)
chr7 (25-95)||(4713649-4713719)
chr7 (25-91)||(37666769-37666835)
chr7 (25-90)||(8920597-8920662)
chr7 (25-90)||(13162995-13163060)
chr7 (25-90)||(36019492-36019557)
chr7 (33-90)||(40623837-40623894)
chr7 (25-90)||(41893991-41894056)
chr7 (33-89)||(23048331-23048386)
chr7 (27-83)||(47500686-47500742)
[»] chr8 (43 HSPs)
chr8 (25-89)||(41159820-41159884)
chr8 (25-93)||(31597024-31597092)
chr8 (25-95)||(23793015-23793085)
chr8 (25-95)||(30439431-30439501)
chr8 (26-83)||(29028898-29028955)
chr8 (26-95)||(41541934-41542003)
chr8 (25-83)||(7472964-7473021)
chr8 (25-83)||(16613710-16613768)
chr8 (1-90)||(34018851-34018949)
chr8 (25-87)||(35031430-35031492)
chr8 (25-83)||(39543460-39543518)
chr8 (25-90)||(6991738-6991803)
chr8 (25-89)||(16327082-16327147)
chr8 (25-90)||(16872086-16872151)
chr8 (25-90)||(34718191-34718256)
chr8 (25-90)||(36424532-36424597)
chr8 (26-90)||(9208141-9208205)
chr8 (25-72)||(4658211-4658258)
chr8 (1-91)||(9549128-9549227)
chr8 (26-95)||(12707226-12707296)
chr8 (25-95)||(36885413-36885483)
chr8 (25-90)||(1633820-1633885)
chr8 (26-83)||(5277641-5277698)
chr8 (25-90)||(12783841-12783906)
chr8 (33-90)||(20174768-20174825)
chr8 (33-90)||(20219495-20219552)
chr8 (25-90)||(29991488-29991552)
chr8 (26-90)||(7375709-7375772)
chr8 (25-95)||(36568034-36568107)
chr8 (25-83)||(2733063-2733121)
chr8 (25-83)||(8497606-8497664)
chr8 (25-79)||(8645240-8645294)
chr8 (25-95)||(14707268-14707338)
chr8 (25-83)||(28646748-28646806)
chr8 (25-83)||(28651332-28651390)
chr8 (33-91)||(37597322-37597380)
chr8 (25-95)||(38708220-38708290)
chr8 (26-90)||(888186-888251)
chr8 (25-90)||(16966861-16966926)
chr8 (25-90)||(32843872-32843937)
chr8 (25-90)||(36110214-36110279)
chr8 (25-90)||(45529176-45529241)
chr8 (25-92)||(43397648-43397716)
[»] chr5 (35 HSPs)
chr5 (26-89)||(18397096-18397159)
chr5 (25-91)||(43441814-43441880)
chr5 (25-89)||(43213990-43214054)
chr5 (25-100)||(9581655-9581730)
chr5 (25-95)||(1839270-1839340)
chr5 (1-90)||(8675363-8675461)
chr5 (25-95)||(15952970-15953040)
chr5 (25-90)||(19481112-19481177)
chr5 (33-90)||(19839916-19839973)
chr5 (26-90)||(4771574-4771638)
chr5 (25-93)||(34270403-34270471)
chr5 (33-91)||(34124705-34124763)
chr5 (25-95)||(41175631-41175701)
chr5 (25-90)||(10649511-10649576)
chr5 (25-90)||(30640866-30640931)
chr5 (34-90)||(38704127-38704183)
chr5 (25-83)||(189640-189698)
chr5 (25-83)||(20770207-20770265)
chr5 (26-88)||(43154137-43154199)
chr5 (25-90)||(9226376-9226441)
chr5 (25-82)||(10659042-10659098)
chr5 (25-90)||(18842251-18842316)
chr5 (25-90)||(43196555-43196620)
chr5 (33-89)||(6446449-6446505)
chr5 (25-89)||(15478734-15478798)
chr5 (25-72)||(6517788-6517835)
chr5 (25-95)||(3640122-3640192)
chr5 (33-83)||(41724273-41724323)
chr5 (25-90)||(2688916-2688981)
chr5 (25-90)||(6292197-6292262)
chr5 (26-83)||(15008487-15008544)
chr5 (44-89)||(30004722-30004767)
chr5 (25-81)||(6940089-6940145)
chr5 (25-81)||(9939371-9939427)
chr5 (25-81)||(18695394-18695450)
[»] chr2 (49 HSPs)
chr2 (25-90)||(29712054-29712119)
chr2 (1-83)||(10711767-10711858)
chr2 (25-95)||(5054684-5054754)
chr2 (25-90)||(6998998-6999063)
chr2 (25-90)||(32869902-32869967)
chr2 (25-89)||(7574511-7574575)
chr2 (25-83)||(9377532-9377590)
chr2 (25-83)||(15269937-15269995)
chr2 (33-95)||(23352832-23352894)
chr2 (25-95)||(40936989-40937059)
chr2 (25-90)||(42678825-42678891)
chr2 (25-90)||(6170706-6170771)
chr2 (25-90)||(18876851-18876916)
chr2 (25-90)||(20911877-20911942)
chr2 (25-82)||(28245804-28245860)
chr2 (25-90)||(44711919-44711984)
chr2 (33-93)||(22525923-22525983)
chr2 (25-91)||(14233647-14233714)
chr2 (25-83)||(25881620-25881678)
chr2 (25-83)||(29361096-29361154)
chr2 (1-90)||(35589317-35589415)
chr2 (25-90)||(28244171-28244235)
chr2 (25-90)||(36802972-36803037)
chr2 (25-89)||(9634367-9634431)
chr2 (42-89)||(11167449-11167497)
chr2 (33-96)||(6895978-6896041)
chr2 (37-95)||(1836101-1836159)
chr2 (25-83)||(2221069-2221127)
chr2 (25-83)||(4299260-4299318)
chr2 (25-83)||(7648466-7648523)
chr2 (26-100)||(12498557-12498630)
chr2 (26-90)||(1415968-1416033)
chr2 (26-83)||(12889769-12889826)
chr2 (37-90)||(13765488-13765541)
chr2 (25-90)||(18723670-18723735)
chr2 (25-90)||(37105714-37105779)
chr2 (25-90)||(39213700-39213765)
chr2 (26-90)||(24562947-24563011)
chr2 (25-89)||(39449343-39449407)
chr2 (25-83)||(2563780-2563838)
chr2 (33-95)||(4023275-4023337)
chr2 (25-90)||(13347744-13347810)
chr2 (33-83)||(16677754-16677804)
chr2 (25-83)||(42866826-42866884)
chr2 (25-90)||(43513488-43513552)
chr2 (47-95)||(3012777-3012825)
chr2 (33-81)||(7664006-7664053)
chr2 (36-92)||(26206935-26206991)
chr2 (26-90)||(33780325-33780389)
[»] chr4 (57 HSPs)
chr4 (25-89)||(38338853-38338917)
chr4 (25-93)||(39344907-39344975)
chr4 (26-90)||(56271437-56271501)
chr4 (25-89)||(12138929-12138993)
chr4 (25-100)||(28657361-28657436)
chr4 (25-83)||(18882912-18882970)
chr4 (27-89)||(39312547-39312609)
chr4 (25-90)||(2999188-2999253)
chr4 (25-90)||(46405904-46405969)
chr4 (26-90)||(13086099-13086163)
chr4 (34-90)||(13104312-13104368)
chr4 (26-90)||(13139225-13139289)
chr4 (1-83)||(26718411-26718502)
chr4 (1-83)||(26731039-26731130)
chr4 (25-83)||(51573569-51573627)
chr4 (25-90)||(14010048-14010113)
chr4 (25-90)||(22819725-22819790)
chr4 (25-90)||(33860722-33860787)
chr4 (25-90)||(49768248-49768313)
chr4 (25-94)||(49896592-49896661)
chr4 (33-89)||(27326683-27326739)
chr4 (27-82)||(40609686-40609741)
chr4 (27-89)||(53405760-53405823)
chr4 (33-83)||(12799798-12799848)
chr4 (25-87)||(23853810-23853872)
chr4 (25-83)||(28458314-28458372)
chr4 (25-94)||(31092585-31092655)
chr4 (25-83)||(32546295-32546353)
chr4 (33-83)||(52846166-52846216)
chr4 (25-90)||(21617259-21617324)
chr4 (25-90)||(31657722-31657787)
chr4 (25-90)||(32696257-32696322)
chr4 (33-90)||(38715331-38715388)
chr4 (24-89)||(41389804-41389868)
chr4 (33-90)||(45143603-45143660)
chr4 (33-90)||(45152372-45152429)
chr4 (27-83)||(1815938-1815994)
chr4 (25-81)||(37514071-37514127)
chr4 (25-81)||(42815480-42815536)
chr4 (36-95)||(4949592-4949651)
chr4 (25-79)||(624253-624307)
chr4 (25-83)||(13263335-13263392)
chr4 (25-95)||(43769787-43769857)
chr4 (25-90)||(47099098-47099161)
chr4 (25-83)||(51852152-51852209)
chr4 (25-95)||(53647350-53647420)
chr4 (25-95)||(53654675-53654745)
chr4 (25-90)||(9118794-9118859)
chr4 (25-90)||(9362609-9362674)
chr4 (25-90)||(30079922-30079987)
chr4 (25-90)||(36111325-36111390)
chr4 (25-90)||(41486073-41486138)
chr4 (33-90)||(47112008-47112065)
chr4 (25-90)||(51194345-51194410)
chr4 (46-90)||(17683438-17683482)
chr4 (35-90)||(42491160-42491215)
chr4 (36-80)||(53299274-53299318)
[»] scaffold0136 (1 HSPs)
scaffold0136 (25-90)||(38501-38566)
[»] chr6 (21 HSPs)
chr6 (25-90)||(14699594-14699659)
chr6 (25-90)||(32459446-32459511)
chr6 (25-89)||(754369-754433)
chr6 (25-93)||(1369436-1369504)
chr6 (25-95)||(14693177-14693247)
chr6 (25-83)||(35213498-35213556)
chr6 (25-90)||(2688995-2689060)
chr6 (25-83)||(868889-868947)
chr6 (25-95)||(5028191-5028261)
chr6 (25-87)||(8747245-8747307)
chr6 (25-90)||(13143312-13143377)
chr6 (25-90)||(33421836-33421900)
chr6 (25-92)||(31749441-31749508)
chr6 (36-90)||(6531110-6531164)
chr6 (25-90)||(18141231-18141296)
chr6 (25-90)||(20822799-20822863)
chr6 (33-83)||(28944916-28944966)
chr6 (25-95)||(32046774-32046844)
chr6 (38-90)||(15318118-15318170)
chr6 (25-89)||(28041745-28041809)
chr6 (27-79)||(34047465-34047516)
[»] chr1 (56 HSPs)
chr1 (25-90)||(13489738-13489803)
chr1 (25-90)||(50328071-50328136)
chr1 (25-95)||(8200151-8200221)
chr1 (1-90)||(40316874-40316972)
chr1 (25-83)||(50781507-50781565)
chr1 (25-90)||(34254281-34254346)
chr1 (25-90)||(35136920-35136985)
chr1 (25-90)||(52362558-52362623)
chr1 (25-89)||(18336222-18336286)
chr1 (25-83)||(3225997-3226055)
chr1 (25-83)||(4469365-4469423)
chr1 (33-95)||(15015482-15015544)
chr1 (25-83)||(32915009-32915067)
chr1 (25-83)||(33125262-33125320)
chr1 (25-95)||(50824817-50824887)
chr1 (34-91)||(6143768-6143825)
chr1 (25-90)||(10889976-10890041)
chr1 (25-90)||(15704992-15705057)
chr1 (25-90)||(19969492-19969557)
chr1 (26-95)||(45417849-45417918)
chr1 (25-90)||(48326044-48326109)
chr1 (25-90)||(52714831-52714896)
chr1 (36-95)||(29154865-29154924)
chr1 (25-100)||(35539193-35539268)
chr1 (33-90)||(4509399-4509457)
chr1 (25-83)||(8447812-8447870)
chr1 (25-95)||(33358083-33358153)
chr1 (25-83)||(38713646-38713704)
chr1 (25-95)||(47721485-47721555)
chr1 (25-95)||(47728477-47728547)
chr1 (25-95)||(48624952-48625022)
chr1 (26-88)||(52267279-52267341)
chr1 (38-95)||(2211117-2211174)
chr1 (25-90)||(30658779-30658843)
chr1 (25-74)||(33054034-33054083)
chr1 (25-90)||(36577342-36577407)
chr1 (25-90)||(44789074-44789138)
chr1 (26-90)||(26967286-26967350)
chr1 (25-81)||(46911369-46911424)
chr1 (25-93)||(49241432-49241500)
chr1 (25-95)||(29147799-29147869)
chr1 (25-99)||(35539280-35539354)
chr1 (34-95)||(43769703-43769765)
chr1 (25-75)||(48220089-48220139)
chr1 (25-83)||(50882047-50882105)
chr1 (25-90)||(756932-756997)
chr1 (25-90)||(7128194-7128259)
chr1 (33-90)||(25259167-25259224)
chr1 (57-90)||(41507124-41507157)
chr1 (25-90)||(46082051-46082116)
chr1 (25-90)||(46543373-46543437)
chr1 (33-90)||(47215660-47215717)
chr1 (25-90)||(50433845-50433910)
chr1 (26-90)||(3603188-3603252)
chr1 (25-89)||(8411649-8411713)
chr1 (26-90)||(21093288-21093352)
[»] scaffold1956 (1 HSPs)
scaffold1956 (25-95)||(846-916)
[»] scaffold0221 (1 HSPs)
scaffold0221 (25-90)||(8290-8355)
[»] scaffold0141 (1 HSPs)
scaffold0141 (25-90)||(12008-12073)
[»] scaffold0532 (1 HSPs)
scaffold0532 (25-83)||(11040-11098)
[»] scaffold0035 (1 HSPs)
scaffold0035 (25-83)||(71984-72042)
[»] scaffold0856 (1 HSPs)
scaffold0856 (26-90)||(1961-2024)
[»] scaffold0010 (1 HSPs)
scaffold0010 (25-95)||(134227-134298)
[»] scaffold0471 (1 HSPs)
scaffold0471 (25-90)||(83-148)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 10464986 - 10465269
Alignment:
Q  1 caattttctctctcatactcacatctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcatagttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10464986 caattttctctctcatactcacatctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcatagttgt 10465085  T
Q  101 tcaaataatactcctcaaatttaatacaaaacctagctatccctacatttctttacattcccaaccaataatatttaagacttgggggccacaaaaggga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10465086 tcaaataatactcctcaaatttaatacaaaacctagctatccctacatttctttacattcccaaccaataatatttaagacttgggggccacaaaaggga 10465185  T
Q  201 aattcctgctgtagtgacccgtatgtatagacagaaagaacaacacctagagattccattttcaccatgttggtggcaagttct 284  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10465186 aattcctgctgtagtgacccgtatgtatagacagaaagaaccacacctagagattccattttcaccatgttggtggcaagttct 10465269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 52937259 - 52937327
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctca 93  Q
    ||||||| ||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||    
T  52937259 ctttatctctctattactttgatttttgtgcaaataccaattttttctttgtaaattatggttgtctca 52937327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 49761383 - 49761441
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  49761383 ctttatctctctattgctttggtttttgtgcaaatacctactttttctttataaattat 49761441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 3281711 - 3281646
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| || ||||||||||||||||||  |||||||||||||||||||||||||||| ||||||    
T  3281711 ctttatctctttattgctttggtttttgtataaatacctattttttctttgtaaattatggttgtc 3281646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 24095393 - 24095336
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  24095393 ctctattgctttggttttcgtgcaaatacctactttttctttgtaaattatggttgtc 24095336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 24645432 - 24645497
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||||    
T  24645432 ctttatctctctattgttttggttttcgtgcaagtacctattttttctttgtaaattatggttgtc 24645497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 39697217 - 39697152
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||    
T  39697217 ctttatctctctattgctttggttttcgtgcaaatatcaattttttctttgtaaattatggttgtc 39697152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 55400075 - 55400140
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||    
T  55400075 ctttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatggttgtc 55400140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 46019538 - 46019602
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||    
T  46019538 ctttatctctctattgctttggttttcgtacaaatacctatcttttctttgtaaattatggttgt 46019602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 24480446 - 24480388
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||||  |||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  24480446 ctttatctatctattactttggtttttgtgcaaatacctactttttctttgtaaattat 24480388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 51343485 - 51343543
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattata 84  Q
    |||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  51343485 tttatctctctattgctttagtttttgtacaaatacctatattttctttgtaaattata 51343543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 37927200 - 37927135
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||  || |||||||||||||||||||| |||||||| ||||||    
T  37927200 ctttatctctctattgctttggtttccgtacaaatacctattttttctttataaattatggttgtc 37927135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 46253698 - 46253763
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||||| |  ||||||||||||||||| ||||||    
T  46253698 ctttatctctctattgctttggttttcgtgcaaataccaacattttctttgtaaattatggttgtc 46253763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 51465909 - 51465844
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||||    
T  51465909 ctttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 51465844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 6999254 - 6999316
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||||||||| |||| |||||||||| ||||||||| ||||||||||| |||||| ||||    
T  6999254 ctctattgctttgattttcgtgcaaatacatattttttcattgtaaattatggttgtcccata 6999316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 21196200 - 21196258
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||| ||||| |||| |||||||||| |||||||||||||||||||||    
T  21196200 ctttatctctctattactttgattttcgtgcaaatacatattttttctttgtaaattat 21196258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 36412207 - 36412269
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||||||||| |||| |||||||||| |||| |||||||||||||||| |||||| ||||    
T  36412207 ctctattgctttgattttcgtgcaaatacatattctttctttgtaaattatggttgtcccata 36412269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 20080148 - 20080213
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| ||||||||  ||||||||||||| ||||||||| |||||||| ||||||    
T  20080148 ctttatctctctattgttttggtttccgtgcaaatacctactttttctttataaattatggttgtc 20080213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 26672474 - 26672539
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| |||| ||| ||||||||||| || |||||||||||||||||| ||||||    
T  26672474 ctttatctctctattgttttgatttctgtgcaaatacttactttttctttgtaaattatggttgtc 26672539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 50206965 - 50206900
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| ||||||||| ||||||||| | | |||||||||||||||||| ||||||    
T  50206965 ctttatctctctattgttttggttttcgtgcaaatatcaactttttctttgtaaattatggttgtc 50206900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 50638346 - 50638281
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||  |||||||||||||  |||||||| |||||||| ||||||    
T  50638346 ctttatctctctattgctttggtttccgtgcaaatacctacattttctttataaattatggttgtc 50638281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 54694108 - 54694043
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| ||||||||||||||| |||||||  ||||||| ||||||    
T  54694108 ctttatctctctattgctttgattttcgtgcaaatacctattctttctttacaaattatggttgtc 54694043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 41281708 - 41281652
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    |||||||| |||||||||||||||||| |||| ||||| |||||||||| |||||||    
T  41281708 ctctattgttttggtttttgtgcaaatgcctactttttttttgtaaattttagttgt 41281652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 42683903 - 42683970
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctc 92  Q
    ||||||| ||||||||||||| |||| |||||||||||| || |||||||  ||||||| ||||||||    
T  42683903 ctttatctctctattgctttgattttcgtgcaaatacctgttctttctttacaaattatggttgtctc 42683970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 26645110 - 26645160
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||||||||||||||  |||||||| ||| ||||||||||||||||||    
T  26645110 ctctattgctttggttttcatgcaaatatctactttttctttgtaaattat 26645160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 37410952 - 37411022
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcatag 96  Q
    |||||| || |||||||||| |||| | ||||||||||| |||| ||||||||||||| ||||| ||||||    
T  37410952 tttatctctttattgctttgattttcgcgcaaatacctacttttactttgtaaattatggttgtttcatag 37411022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 1337829 - 1337768
Alignment:
Q  34 tctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||| ||||||||| |||  |||||||| |||||||| |||||||||||    
T  1337829 tctattgttttggttttggtgcaaatatctacattttctttataaattatggttgtctcata 1337768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 3347121 - 3347064
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||| ||||||||||||| |||| ||||||||||||||| |||||||  |||||||    
T  3347121 tttatctctctattgctttgattttcgtgcaaatacctattctttctttacaaattat 3347064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 24482958 - 24482893
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| || ||||| ||||||||| ||||||||||| | ||||||||||||| |||| ||||||    
T  24482958 ctttatctctatattgttttggttttcgtgcaaataccaactttttctttgtaagttatggttgtc 24482893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 31376760 - 31376696
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| |||||| ||||||||||||||||| ||||| | ||||||    
T  31376760 ctttatctctctattgctttgattttcgtgcaa-tacctattttttctttgcaaattttggttgtc 31376696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 34057948 - 34057883
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||  |||||||||||| |||| |||||| |||| | ||||||||| |||||||||||||||    
T  34057948 ctttatctttctattgctttgtttttcgtgcaattaccaactttttctttataaattatagttgtc 34057883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 46094488 - 46094545
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||| ||||||||||||| ||||||| |||||||||||| ||| |||| |||||||    
T  46094488 tttatctctctattgctttgatttttgtacaaatacctattatttttttgcaaattat 46094545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8846534 - 8846625
Alignment:
Q  1 caattttctctctcatactcacat---------ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||||||||||||||||||||         ||||||| ||| |||| |||||||| ||| ||||||| |||||||||||| ||||||||    
T  8846534 caattttctctctcatactcacattattttttactttatctctccattgttttggtttctgtacaaatacttattttttctttataaattat 8846625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 44677512 - 44677414
Alignment:
Q  1 caattttctctctcatactcacat---------ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||||||||||||||||||||         ||||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||| ||| ||||||    
T  44677512 caattttctctctcatactcacattattttttactttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaagtatggttgtc 44677414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 55282657 - 55282615
Alignment:
Q  53 tgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    |||||||||| | ||||||||||||||||| ||||||||||||    
T  55282657 tgcaaataccaactttttctttgtaaattacagttgtctcata 55282615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 3953467 - 3953402
Alignment:
Q  28 tatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctca 93  Q
    |||| ||||||||||||||||||  |||||||| | | ||||||||| ||||||||  ||||||||    
T  3953467 tatctctctattgctttggttttcatgcaaatatcaactttttctttataaattatgattgtctca 3953402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 36121897 - 36121962
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| || ||||||||| ||||||   |||||||||||||| ||| ||||||    
T  36121897 ctttatctctctattgctatgatttttgtgccaataccacatttttctttgtaaaatatggttgtc 36121962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 37508493 - 37508428
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||| ||| ||||||    
T  37508493 ctttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatatggttgtc 37508428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 46852118 - 46852069
Alignment:
Q  34 tctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||| ||||||||| | | ||||||||||||||||||    
T  46852118 tctattgttttggttttcgtgcaaatatcaactttttctttgtaaattat 46852069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 1280123 - 1280059
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| || ||||| |||| |||| ||  ||||| |||||||||||||||||||||| ||||||    
T  1280123 tttatctctatattgttttgattttcgtaaaaataactattttttctttgtaaattatggttgtc 1280059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 16675521 - 16675465
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatt 81  Q
    ||||||| || |||||||||| |||| |||||||||  || ||||||||||||||||    
T  16675521 ctttatctctttattgctttgtttttcgtgcaaatatatactttttctttgtaaatt 16675465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 22371267 - 22371319
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgta 77  Q
    ||||||| |||||||||| |||||| | ||| |||||| ||||||||||||||    
T  22371267 ctttatctctctattgctatggtttctttgccaataccaattttttctttgta 22371319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 29573351 - 29573295
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatt 81  Q
    ||||||| ||||||||||||| |||| |||| || ||||| |||| |||||||||||    
T  29573351 ctttatctctctattgctttgattttcgtgccaaaacctacttttcctttgtaaatt 29573295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 45754714 - 45754770
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatt 81  Q
    ||||||| |||||  |||||| ||||||||| || ||||| ||||||||||||||||    
T  45754714 ctttatctctctaccgctttgatttttgtgctaaaacctactttttctttgtaaatt 45754770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 3062406 - 3062471
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3062406 ctttatctctctattgttttggtttttgtgcaaatacctattttttctttgtaaattatggttgtc 3062471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 44184554 - 44184490
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  44184554 ctttatctctctattgctttggttttcgtgcaaatacctattttttctttgtaaattatggttgt 44184490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 10055627 - 10055557
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||    
T  10055627 ctttatctctctattgctttggtttttgtacaaataccaactttttctttgtaaattatagttgtcccata 10055557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 31844600 - 31844535
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||    
T  31844600 ctttatctctctattgttttggtttttgtacaaatacctactttttctttgtaaattatagttgtc 31844535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 43573538 - 43573470
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctca 93  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||    
T  43573538 ctttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatggttgtctca 43573470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 13729802 - 13729867
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  13729802 ctttatctctctattgcgttggttttcgtgcaaataccaattttttctttgtaaattatggttgtc 13729867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 28036820 - 28036885
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||||    
T  28036820 ctttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtc 28036885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 35588886 - 35588818
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctca 93  Q
    ||||||| ||||||||||||| |||| ||||||||||| | ||||||||||||||||||| ||||||||    
T  35588886 ctttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattataattgtctca 35588818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 3293205 - 3293270
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| ||||  |||||||||||| ||||||||| |||||||||||||||    
T  3293205 ctttatctctctattgctttgattttcatgcaaatacctactttttctttataaattatagttgtc 3293270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 20482603 - 20482668
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| |||||||| ||| ||||||||||||||||| ||||||||||| ||||||    
T  20482603 ctttatctctctattgttttggtttatgtacaaatacctattttttccttgtaaattatggttgtc 20482668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 21559874 - 21559939
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| ||||||||||||||| |||||||  ||||||||||||||    
T  21559874 ctttatctctctattgctttgattttcgtgcaaatacctattatttctttacaaattatagttgtc 21559939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 43482599 - 43482664
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| ||||||||| ||||||||||||| |||||||||| ||||||| ||||||    
T  43482599 ctttatctctctattgttttggttttcgtgcaaatacctactttttctttgaaaattatggttgtc 43482664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 34855580 - 34855521
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaataccta-ttttttctttgtaaattat 83  Q
    ||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||    
T  34855580 ctttatcactctattgctttgatttttatgcaaatacctacttttttttttgtaaattat 34855521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 3343325 - 3343259
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtct 91  Q
    ||||||| |||||||||||||||||| |||||||| || | ||||||||| |||||||| |||||||    
T  3343325 ctttatctctctattgctttggttttcgtgcaaatcccaactttttctttataaattatggttgtct 3343259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 7817712 - 7817782
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||| |||| ||||||||| | | |||||||||||||||||| |||||| ||||    
T  7817712 ctttatctctctattgctttgattttcgtgcaaatatccactttttctttgtaaattatggttgtcacata 7817782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 11352969 - 11352904
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| || ||||||||||||||| ||| ||||||| | |||||||||||||||||| ||||||    
T  11352969 ctttatctctttattgctttggttttcgtgtaaataccaaatttttctttgtaaattatggttgtc 11352904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 11564969 - 11565033
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| |||||| ||||||||||||||||| ||||||| ||||||    
T  11564969 ctttatctctctattgctttgattttcgtgcaa-tacctattttttctttgcaaattatggttgtc 11565033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 41399158 - 41399093
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| ||||||||| ||| |||||| ||||||||||||||||||| | ||||||    
T  41399158 ctttatctctctattgttttggttttcgtgtaaatacttattttttctttgtaaattttggttgtc 41399093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 12645905 - 12645837
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctca 93  Q
    ||||||| ||||||||||||| |||| ||||||||| | | |||||||||||||||||| ||| |||||    
T  12645905 ctttatctctctattgctttgattttcgtgcaaatatcaactttttctttgtaaattatggttatctca 12645837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 16980373 - 16980440
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctca 93  Q
    ||||||| |||||| ||||||||||| | ||||||||| ||||||||||||||||||||  ||||||||    
T  16980373 ctttatctctctat-gctttggttttcgggcaaataccaattttttctttgtaaattatgattgtctca 16980440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 21822594 - 21822530
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| ||||||| ||||| |||| ||| ||||||| |||||||||||||||||||| |||||    
T  21822594 ctttatctctctattactttgattttcgtgtaaataccaattttttctttgtaaattatggttgt 21822530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 25067299 - 25067357
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||| |||||||||  ||||||||| | |||||||||||||||||||    
T  25067299 ctttatctctctattgttttggttttcatgcaaatacattttttttctttgtaaattat 25067357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 41458683 - 41458737
Alignment:
Q  36 tattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||| |||| |||||||||||||||||| ||||||||| |||||||| ||||||    
T  41458683 tattgttttgatttttgtgcaaatacctactttttctttataaattatggttgtc 41458737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 42926215 - 42926285
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| |||||||| |||| ||| ||| ||||||| || |||||||||||||||||| |||||| ||||    
T  42926215 ctttatctctctattgttttgatttctgtacaaatacttactttttctttgtaaattatggttgtcacata 42926285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 46812900 - 46812842
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||| |||| |||||||||||||||||||| |||||||  |||||||    
T  46812900 ctttatctctctattgttttgatttttgtgcaaatacctattctttctttacaaattat 46812842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 19786074 - 19786009
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||| |||| ||||||  ||||||||||||||| ||| ||||||    
T  19786074 ctttatctctctattgctctggttttcgtgccaataccacttttttctttgtaaaatatggttgtc 19786009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 32815244 - 32815309
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| |||||| ||||| ||||||  ||||||||||||||| ||| ||||||    
T  32815244 ctttatctctctattgctatggtttctgtgccaataccacttttttctttgtaaaatatggttgtc 32815309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 34757458 - 34757401
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||| ||||||||  ||||||||||||| ||||||||| |||||||| ||||||    
T  34757458 ctctattgttttggtttcagtgcaaatacctactttttctttataaattatggttgtc 34757401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 35452568 - 35452503
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||  ||||||||||||  ||||||||| |||||||| ||||||    
T  35452568 ctttatctctctattgctttgatttccgtgcaaataccttctttttctttataaattatggttgtc 35452503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 44304007 - 44304064
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||| |||| |||| || ||||||| |||||||||| |||||||||||||||||    
T  44304007 ctctattgttttgattttcgtacaaatacttattttttctctgtaaattatagttgtc 44304064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 16708237 - 16708301
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| |||||||| |||| |||||||||||||| ||||| |||||||  ||||||| ||||||    
T  16708237 tttatctctctattgttttgatttttgtgcaaatatctattctttctttacaaattatggttgtc 16708301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 17682473 - 17682537
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| |||||||| |||| |||||||||||||| ||||| |||||||  ||||||| ||||||    
T  17682473 tttatctctctattgttttgatttttgtgcaaatatctattctttctttacaaattatggttgtc 17682537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 46829555 - 46829611
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatt 81  Q
    ||||||| ||||||||||||| |||| |||| || ||||| ||||||||||||||||    
T  46829555 ctttatctctctattgctttgattttcgtgccaaaacctactttttctttgtaaatt 46829611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 47495046 - 47495105
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattata 84  Q
    ||||||| |||||||| |||  ||| ||||||||||||||| |||| |||||||||||||    
T  47495046 ctttatctctctattgttttaatttctgtgcaaatacctatcttttatttgtaaattata 47495105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 4713649 - 4713719
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||  |||||||   |||||||||||  |||||||||||||||||| |||||| ||||    
T  4713649 ctttatctctctattgtgttggtttccatgcaaataccttatttttctttgtaaattatggttgtcacata 4713719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 37666835 - 37666769
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtct 91  Q
    ||||||| || |||||||||| |||| ||| |||||  |||||||| |||||||||||| |||||||    
T  37666835 ctttatctctttattgctttgattttcgtgtaaatatatattttttatttgtaaattatggttgtct 37666769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 8920662 - 8920597
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| |||| |||  |||||||||||||  |||||||| |||||||| ||||||    
T  8920662 ctttatctctctattgttttgatttccgtgcaaatacctacgttttctttataaattatggttgtc 8920597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 13162995 - 13163060
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||| ||| ||||||    
T  13162995 ctttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatatggttgtc 13163060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 36019492 - 36019557
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| || ||||||| |||||| ||||  ||||||||  ||||||||||||||||| ||||||    
T  36019492 ctttatctctatattgctatggtttctgtgtcaatacctaccttttctttgtaaattatggttgtc 36019557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 40623894 - 40623837
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||||||| ||||  |||||| |||||||| ||| |||||||||||| ||||||    
T  40623894 ctctattgcttttgtttccgtgcaactacctattgtttttttgtaaattatggttgtc 40623837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 41893991 - 41894056
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||| ||| ||||||||| ||||| ||||| | |||| ||||||||||||| ||||||    
T  41893991 ctttatctctctgttgttttggttttcgtgcatataccaacttttcctttgtaaattatggttgtc 41894056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 23048386 - 23048331
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    |||||||| |||||||||  ||||||||| || |||||||||||||||||| |||||    
T  23048386 ctctattgttttggttttcatgcaaatac-tactttttctttgtaaattatggttgt 23048331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 47500686 - 47500742
Alignment:
Q  27 ttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||| |||||||| ||| ||||| ||| |||||  |||||||||||||||||||||    
T  47500686 ttatctctctattgttttagttttcgtgtaaataaatattttttctttgtaaattat 47500742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 43)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 41159884 - 41159820
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  41159884 ctttatctctctattgctttggttttcgtgcaaatacctattttttctttgtaaattatggttgt 41159820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 31597024 - 31597092
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctca 93  Q
    ||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||  ||||||||    
T  31597024 ctttatctctctattgttttggtttttgtgcaaataccaactttttctttgtaaattatgattgtctca 31597092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 23793085 - 23793015
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    |||||||  |||||||| |||| ||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  23793085 ctttatctttctattgcgttggattttgtgcaaataacaattctttctttgtaaattatagttgtctcata 23793015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 30439501 - 30439431
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||| |||| ||||||||||  |||||||||||||||||||| |||||| ||||    
T  30439501 ctttatctctctattgctttgattttcgtgcaaatactcattttttctttgtaaattatggttgtcacata 30439431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 29028955 - 29028898
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  29028955 tttatctctctattgctttgatttttgtgcaaatacctattttttctttacaaattat 29028898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 41541934 - 41542003
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    |||||| ||||||||| ||||||||||||||||||| |||||||| ||| |||||||| |||||| ||||    
T  41541934 tttatctctctattgcattggtttttgtgcaaatacttattttttatttataaattatggttgtcccata 41542003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 7473021 - 7472964
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||||||    
T  7473021 ctttatctctctattgctttagttttcgtgcaaatacctat-ttttctttgtaaattat 7472964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 16613710 - 16613768
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||| |||||||||||||||||||| |||||||  |||||||    
T  16613710 ctttatctctctattgctttgatttttgtgcaaatacctattctttctttacaaattat 16613768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 34018851 - 34018949
Alignment:
Q  1 caattttctctctcatactcacat---------ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||||||||||||||||||||         |||||||||||||||| ||||| ||| |||||| |||| | |||||||||||||||||| ||||||    
T  34018851 caattttctctctcatactcacattactttttactttatcactctattgttttgggtttcgtgcaattaccaactttttctttgtaaattatggttgtc 34018949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 35031492 - 35031430
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagtt 87  Q
    ||||||| ||||||||||||| |||  ||||||||| ||| ||||||||||||||||||||||    
T  35031492 ctttatctctctattgctttgatttccgtgcaaatatctactttttctttgtaaattatagtt 35031430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 39543518 - 39543460
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||| |||  |||||||||| |||||||||||||||||||||    
T  39543518 ctttatctctctattgctttgttttccgtgcaaatacttattttttctttgtaaattat 39543460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 6991803 - 6991738
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||| ||||||||||||||||||| ||| ||| |||||||||||||| ||| ||||||    
T  6991803 ctttatctctcttttgctttggtttttgtgcatataactactttttctttgtaaaatatggttgtc 6991738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 16327147 - 16327082
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatac-ctattttttctttgtaaattatagttgt 89  Q
    ||||||| |||||||  |||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  16327147 ctttatctctctattattttggttttcttgcaaatacactattttttctttgtaaattatagttgt 16327082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 16872151 - 16872086
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| ||||||||| | | |||||||||||||||||| ||||||    
T  16872151 ctttatctctctattgctttgattttcgtgcaaatatcaactttttctttgtaaattatggttgtc 16872086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 34718191 - 34718256
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| ||||||| |||||||||||| |||||||  ||||||| ||||||    
T  34718191 ctttatctctctattgctttgatttttgtacaaatacctattctttctttacaaattatggttgtc 34718256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 36424597 - 36424532
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| ||||||||  |||||||||| |||||||||||| |||||||| ||||||    
T  36424597 ctttatctctctattgttttggtttccgtgcaaatacatattttttctttataaattatggttgtc 36424532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 9208141 - 9208205
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| |||||||| ||||||||  ||||||||||||| ||||||||| || ||||||||||||    
T  9208141 tttatctctctattgttttggtttacgtgcaaatacctactttttctttatatattatagttgtc 9208205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 4658258 - 4658211
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttct 72  Q
    ||||||| |||||||||||||||||||||||||||||| | |||||||    
T  4658258 ctttatctctctattgctttggtttttgtgcaaataccaactttttct 4658211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 9549227 - 9549128
Alignment:
Q  1 caattttctctctcatactcacat---------ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtct 91  Q
    ||||||||||||||||||||||||         ||||||| ||||||||| ||| |||||||  |||||| ||||||| ||||||||||||| |||||||    
T  9549227 caattttctctctcatactcacattattttttactttatctctctattgcattgatttttgtttaaatacatatttttcctttgtaaattatggttgtct 9549128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 12707226 - 12707296
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaataccta-ttttttctttgtaaattatagttgtctcata 95  Q
    |||||| |||||||| ||||||||| ||| ||||||| | ||||||||||||||||||| |||||| ||||    
T  12707226 tttatctctctattgttttggttttcgtgtaaataccaacttttttctttgtaaattatggttgtcccata 12707296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 36885483 - 36885413
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| || |||||||||| |||| |||  |||||||| |||||||||||||||||| |||||| ||||    
T  36885483 ctttatctctttattgctttgattttcgtgtcaatacctactttttctttgtaaattatggttgtcccata 36885413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 1633885 - 1633820
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| |||||| ||||| ||||||  ||||||||||||||| ||| ||||||    
T  1633885 ctttatctctctattgctatggtttctgtgccaataccacttttttctttgtaaagtatggttgtc 1633820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 5277698 - 5277641
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||| ||||||||||||| |||| |||||||||| |||| |||||||| |||||||    
T  5277698 tttatctctctattgctttgattttcgtgcaaatacatattctttctttgcaaattat 5277641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 12783841 - 12783906
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| ||||||||  || |||||||||||||||||||| ||||||  |||||||    
T  12783841 ctttatctctctattgttttggtttccgtacaaatacctattttttctttataaattccagttgtc 12783906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 20174768 - 20174825
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||| |||| |||| || ||||||| |||||||||| |||||||||||||||||    
T  20174768 ctctattgttttgattttcgtacaaatacttattttttctctgtaaattatagttgtc 20174825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 20219495 - 20219552
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||| |||| |||| || ||||||| |||||||||| |||||||||||||||||    
T  20219495 ctctattgttttgattttcgtacaaatacttattttttctctgtaaattatagttgtc 20219552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 29991488 - 29991552
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| |||||| ||||||||||||||||| ||||| | ||||||    
T  29991488 ctttatctctctattgctttgattttcgtgcaa-tacctattttttctttgcaaattttggttgtc 29991552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 7375772 - 7375709
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| ||||||||||||| |||| |||||| ||||||||||||||||| ||||| | ||||||    
T  7375772 tttatctctctattgctttgattttcgtgcaa-tacctattttttctttgcaaattttggttgtc 7375709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 36568034 - 36568107
Alignment:
Q  25 ctttatcactctattgctttgg---tttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||||   ||||||| |||||||||| ||||| | |||||||||| |||||| ||||    
T  36568034 ctttatctctctattgctttggttttttttgtacaaatacctactttttttgtgtaaattatggttgtcccata 36568107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 2733063 - 2733121
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||  ||||||||  ||||||||||||| ||||||||| ||||||||    
T  2733063 ctttatctctctattattttggtttccgtgcaaatacctactttttctttataaattat 2733121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 8497664 - 8497606
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||   ||| || |||||| ||||||||||||||||||||||    
T  8497664 ctttatctctctattgctttaaatttcgtacaaatatctattttttctttgtaaattat 8497606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 8645240 - 8645294
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaa 79  Q
    ||||||| |||||||| ||||||||   ||||||||| |||||||||||||||||    
T  8645240 ctttatctctctattgttttggtttccatgcaaatacttattttttctttgtaaa 8645294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 14707338 - 14707268
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| | ||||||||||| ||||  ||  |||||||| ||||||||||||||||||  ||||||||||    
T  14707338 ctttatctccctattgctttgattttcttgtcaatacctactttttctttgtaaattatgattgtctcata 14707268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 28646748 - 28646806
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||| ||||||||||||| || |||||| ||| ||||||||| ||||||||    
T  28646748 ctttatctctctgttgctttggttttcgtacaaatatctactttttctttataaattat 28646806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 28651332 - 28651390
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||| ||||||||||||| || |||||| ||| ||||||||| ||||||||    
T  28651332 ctttatctctctgttgctttggttttcgtacaaatatctactttttctttataaattat 28651390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 37597322 - 37597380
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtct 91  Q
    ||||||||||||| |||| ||| |||| ||||  ||||||||||||||||| |||||||    
T  37597322 ctctattgctttgattttcgtgtaaatccctaccttttctttgtaaattatggttgtct 37597380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 38708290 - 38708220
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||| |||| |||| |||  ||||||||| |||||||||||||| ||||||| |||||| ||||    
T  38708290 ctttatctctccattgttttgatttccgtgcaaatatctattttttctttgcaaattatggttgtcacata 38708220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 888251 - 888186
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgt-aaattatagttgtc 90  Q
    |||||| ||||||| |||||||||| |||  |||| ||||||||||||| | ||||||||||||||    
T  888251 tttatctctctattactttggttttcgtgtcaatatctattttttctttataaaattatagttgtc 888186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 16966861 - 16966926
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||| ||| ||||||    
T  16966861 ctttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaagtatggttgtc 16966926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 32843937 - 32843872
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||| ||| ||||||    
T  32843937 ctttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaagtatggttgtc 32843872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 36110214 - 36110279
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| | ||||||| |||| ||||||  ||||||||||||||| ||| ||||||    
T  36110214 ctttatctctctattgttatggttttcgtgccaataccacttttttctttgtaaaatatggttgtc 36110279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 45529241 - 45529176
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||| ||| ||||||    
T  45529241 ctttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatatggttgtc 45529176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 43397648 - 43397716
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatac-ctattttttctttgtaaattatagttgtctc 92  Q
    ||||||| ||||| ||| ||| |||||||||||||||  ||||||| |||||||||||||  |||||||    
T  43397648 ctttatctctctaatgcattgatttttgtgcaaatactttatttttcctttgtaaattatgattgtctc 43397716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 18397159 - 18397096
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  18397159 tttatctctctattgctttggttttcgtgcaaatacctattttttctttgtaaattataattgt 18397096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 43441814 - 43441880
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtct 91  Q
    ||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||    
T  43441814 ctttatctctctattgctttggttttcgtgcaaataccaattttttctttgtaaattatggttgtct 43441880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 43214054 - 43213990
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| || ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  43214054 ctttatctctttattgttttggttttcgtgcaaatacctattttttctttataaattatagttgt 43213990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 9581655 - 9581730
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcatagttgt 100  Q
    ||||||| |||||||| ||||||||  ||||||||||||| |||||||||||||||||| |||||| || ||||||    
T  9581655 ctttatctctctattgttttggtttccgtgcaaatacctactttttctttgtaaattatggttgtcacaaagttgt 9581730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 1839340 - 1839270
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    |||||||  ||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||    
T  1839340 ctttatctttctattgttttggttttcgtgcaaatatctattttttctttgtaaattatggttgtcccata 1839270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8675461 - 8675363
Alignment:
Q  1 caattttctctctcatactcacat---------ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||||||||||||||||||||         ||||||| ||||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||||    
T  8675461 caattttctctctcatactcacattactttttactttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 8675363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 15953040 - 15952970
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||| |||| ||||||||||| | |||||||||||||||||| |||||| ||||    
T  15953040 ctttatctctctattgctttgattttcgtgcaaatacccactttttctttgtaaattatggttgtcacata 15952970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 19481177 - 19481112
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| |||||| || ||||||||||| | |||||||||||||||||||||||||    
T  19481177 ctttatctctctattgttttggtcttcgtgcaaataccaactttttctttgtaaattatagttgtc 19481112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 19839973 - 19839916
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||    
T  19839973 ctctattgctttggttttcgtgcaaatatcaattttttctttgtaaattatggttgtc 19839916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 4771574 - 4771638
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| ||||||||||||| ||||||||||||||| |||| ||||||| |||||||| ||||||    
T  4771574 tttatctctctattgctttgatttttgtgcaaatacatattctttctttataaattatggttgtc 4771638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 34270403 - 34270471
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctca 93  Q
    ||||||| |||| |||| |||||||| ||||||||||||| |||| ||||||||||||| |||||||||    
T  34270403 ctttatctctctgttgcattggttttcgtgcaaatacctacttttcctttgtaaattatggttgtctca 34270471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 34124705 - 34124763
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtct 91  Q
    |||||||||||||||||| ||| ||||||| | |||||||||||||||||| |||||||    
T  34124705 ctctattgctttggttttcgtgtaaataccaactttttctttgtaaattatggttgtct 34124763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 41175701 - 41175631
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||| | || ||||||||||| | |||||||||||||||||| |||||| ||||    
T  41175701 ctttatctctctattgctttgatcttcgtgcaaatacccactttttctttgtaaattatggttgtcacata 41175631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 10649511 - 10649576
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| ||||| ||||| | |||||||||||||||||| ||||||    
T  10649511 ctttatctctctattgctttgattttcgtgcacataccaactttttctttgtaaattatggttgtc 10649576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 30640866 - 30640931
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| || |||||||||||| ||||||| |||||||| ||||||    
T  30640866 ctttatctctctattgctttgattttcgtacaaatacctattctttctttataaattatggttgtc 30640931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 38704183 - 38704127
Alignment:
Q  34 tctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||||    
T  38704183 tctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 38704127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 189698 - 189640
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||||||||||||| ||||||||| | | ||||||||| ||||||||    
T  189698 ctttatctctctattgctttggttttcgtgcaaatatcaactttttctttataaattat 189640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 20770207 - 20770265
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||| |||| |||  |||||||| ||||||||||||||||||    
T  20770207 ctttatctctctattgctttgattttcgtgtcaatacctactttttctttgtaaattat 20770265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 43154137 - 43154199
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttg 88  Q
    |||||| ||||||||||||| |||| |||||||||| |||| |||||||| ||||||| ||||    
T  43154137 tttatctctctattgctttgattttcgtgcaaatacttattctttctttgcaaattatggttg 43154199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 9226376 - 9226441
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| |||| |||  |||||||||| || ||||||||||||||||||| |||||    
T  9226376 ctttatctctctattgttttgatttccgtgcaaatacttactttttctttgtaaattataattgtc 9226441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 10659098 - 10659042
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatta 82  Q
    ||||||| |||||||||||||||||| ||||||||| ||| ||||||||| |||||||    
T  10659098 ctttatctctctattgctttggttttcgtgcaaatatcta-tttttctttataaatta 10659042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 18842316 - 18842251
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||| |||| ||||||  ||||||||||||||| ||| ||||||    
T  18842316 ctttatctctctattgctatggttttcgtgccaataccacttttttctttgtaaaatatggttgtc 18842251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 43196620 - 43196555
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| |||||||||| |||| |||||||  ||||||| ||||||    
T  43196620 ctttatctctctattgctttgattttcgtgcaaatacgtattctttctttacaaattatggttgtc 43196555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 6446505 - 6446449
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    |||||||||||| ||||| || ||||||| |||||||| |||||||||||| |||||    
T  6446505 ctctattgcttttgttttcgtacaaatacatattttttttttgtaaattatggttgt 6446449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 15478734 - 15478798
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| ||| |||| ||||||||| ||||||||| | | |||||||||||||||||| |||||    
T  15478734 ctttatctctcaattgttttggttttcgtgcaaatatcaactttttctttgtaaattatggttgt 15478798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 6517788 - 6517835
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttct 72  Q
    ||||||| |||||||||||||||||| ||||||||||| | |||||||    
T  6517788 ctttatctctctattgctttggttttcgtgcaaataccaactttttct 6517835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 3640192 - 3640122
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    |||||||  |||||||||||| ||||  |||||||||| | ||||||||| |||||||| |||||| ||||    
T  3640192 ctttatctttctattgctttgattttcatgcaaatacccactttttctttataaattatggttgtcacata 3640122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 41724273 - 41724323
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||||  ||||||||  ||| ||||||||||||||||||||||||||||    
T  41724273 ctctattattttggtttccgtgtaaatacctattttttctttgtaaattat 41724323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 2688981 - 2688916
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||  |||| |||||   ||||||||||||||| ||||||||||    
T  2688981 ctttatctctctattgctatggtttccgtgccaatacaacttttttctttgtaaaatatagttgtc 2688916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 6292197 - 6292262
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||  |||| |||| || |||||||||||| |||||||| ||||||| ||||||    
T  6292197 ctttatctctctattattttgattttcgtacaaatacctattatttctttgcaaattatggttgtc 6292262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 15008544 - 15008487
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||| |||||||| ||||||||| ||||||||| ||| ||||  ||||||||||||    
T  15008544 tttatctctctattgttttggttttcgtgcaaatatctacttttcttttgtaaattat 15008487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 30004767 - 30004722
Alignment:
Q  44 tggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| || || ||||||| ||||||||||||||||||||||||    
T  30004767 tggttttcgttcacatacctactttttctttgtaaattatagttgt 30004722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 6940145 - 6940089
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatt 81  Q
    ||||||| ||||||||||||| |||| |||| || ||||| |||| |||||||||||    
T  6940145 ctttatctctctattgctttgattttcgtgccaaaacctacttttcctttgtaaatt 6940089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 9939427 - 9939371
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatt 81  Q
    ||||||| ||||||||||||| |||| |||| || ||||| |||| |||||||||||    
T  9939427 ctttatctctctattgctttgattttcgtgccaaaacctacttttcctttgtaaatt 9939371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 18695394 - 18695450
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatt 81  Q
    ||||||| ||||||||||||| |||| |||| || ||||| |||| |||||||||||    
T  18695394 ctttatctctctattgctttgattttcgtgctaaaacctacttttcctttgtaaatt 18695450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 49)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 29712054 - 29712119
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||    
T  29712054 ctttatctctctattgctttggtttttatgcaaatacctactttttctttgtaaattatggttgtc 29712119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10711767 - 10711858
Alignment:
Q  1 caattttctctctcatactcacat---------ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||||||||||||||||||||         ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  10711767 caattttctctctcatactcacattactttttactttatctctctattgctttggttttcgtgtaaatacctattttttctttgtaaattat 10711858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 5054684 - 5054754
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||| |||| ||||||||||||| |||||||||||||||||| |||||| ||||    
T  5054684 ctttatctctctattgctttgattttcgtgcaaatacctactttttctttgtaaattattgttgtcacata 5054754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 6999063 - 6998998
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||    
T  6999063 ctttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatggttgtc 6998998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 32869902 - 32869967
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  32869902 ctttatctctttattgctttggttttcgtgcaaataccaattttttctttgtaaattatggttgtc 32869967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 7574511 - 7574575
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| ||||||| ||||| |||| |||||||||||||||||||| |||||||||||||||||    
T  7574511 ctttatctctctattactttgattttcgtgcaaatacctattttttccttgtaaattatagttgt 7574575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 9377532 - 9377590
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  9377532 ctttatctctctattgctttggttttcgtgcaaatatctactttttctttgtaaattat 9377590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 15269937 - 15269995
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||||||    
T  15269937 ctttatctctctattgctttgattttcgtgcaaatacctactttttctttgtaaattat 15269995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 23352894 - 23352832
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||||| |||||| ||||    
T  23352894 ctctattgctttggttttcgtgcaaatacatactttttctttgtaaattatggttgtcccata 23352832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 40937059 - 40936989
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||| |||| ||||||||||| | |||||||||||||||||| |||||| ||||    
T  40937059 ctttatctctctattgctttgattttcgtgcaaatacccactttttctttgtaaattatggttgtcacata 40936989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 42678825 - 42678891
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaataccta-ttttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||  ||||||||||||| ||||||||||||||||||| ||||||    
T  42678825 ctttatctctctattgctttggtttccgtgcaaatacctacttttttctttgtaaattatggttgtc 42678891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 6170706 - 6170771
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||| ||| |||||||| ||||||    
T  6170706 ctttatctctctattgctttggttttcgtgcaaataccaattttttttttataaattatggttgtc 6170771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 18876916 - 18876851
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||  ||||||||||||| ||||||||| |||||||| ||||||    
T  18876916 ctttatctctctattgctttggtttccgtgcaaatacctactttttctttataaattatggttgtc 18876851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 20911877 - 20911942
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||  ||||||||| |||||||||||||||||| ||| ||||||    
T  20911877 ctttatctctctattgctttggtttccgtgcaaatatctattttttctttgtaaaatatggttgtc 20911942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 28245804 - 28245860
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatta 82  Q
    ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  28245804 ctttatctctctattgctttggttttcgtgcaaataccta-tttttctttgtaaatta 28245860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 44711984 - 44711919
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| ||||||||||||||| ||||||| ||||||||| |||||    
T  44711984 ctttatctctctattgctttgattttcgtgcaaatacctattctttctttataaattataattgtc 44711919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 22525983 - 22525923
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctca 93  Q
    ||||||||||||| |||| |||||||| |||| |||||||||||||||||| |||||||||    
T  22525983 ctctattgctttgattttcgtgcaaatgcctactttttctttgtaaattatggttgtctca 22525923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 14233714 - 14233647
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacct-attttttctttgtaaattatagttgtct 91  Q
    ||||||| ||||||||||||||||||||||||||||  | | |||||||||||||||||| |||||||    
T  14233714 ctttatctctctattgctttggtttttgtgcaaatatttaactttttctttgtaaattatggttgtct 14233647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 25881620 - 25881678
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||| ||||||||||||| ||  ||||||||||||||||||||||||||||    
T  25881620 ctttatctctctgttgctttggttttcgtataaatacctattttttctttgtaaattat 25881678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 29361096 - 29361154
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||| ||||||| |||||||||| ||||||||| ||||||||    
T  29361096 ctttatctctctattgctttgatttttgtacaaatacctactttttctttataaattat 29361154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 35589415 - 35589317
Alignment:
Q  1 caattttctctctcatactcacat---------ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||||||||||||||||||||         ||||||| |||||||| ||||||||| ||||||||| | | |||||||||||||||||| ||||||    
T  35589415 caattttctctctcatactcacattactttttactttatctctctattgttttggttttcgtgcaaatatcaactttttctttgtaaattatggttgtc 35589317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 28244235 - 28244171
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| |||||| ||||||||||||||||| |||||||| |||||    
T  28244235 ctttatctctctattgctttgattttcgtgcaa-tacctattttttctttgcaaattataattgtc 28244171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 36802972 - 36803037
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||| ||||| |||||||||||||||||||| |||||||  ||||||| ||||||    
T  36802972 ctttatctctctattactttgatttttgtgcaaatacctattctttctttacaaattatggttgtc 36803037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 9634431 - 9634367
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| || ||||| ||||||||| ||||||||||| | |||||||||||||||||| |||||    
T  9634431 ctttatctctatattgttttggttttcgtgcaaataccaactttttctttgtaaattatggttgt 9634367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 11167497 - 11167449
Alignment:
Q  42 tttggtttttgtgcaaatacctatt-ttttctttgtaaattatagttgt 89  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  11167497 tttggtttttgtgcaaatacctatttttttctttgtaaattatggttgt 11167449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 6895978 - 6896041
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcatag 96  Q
    |||||||| |||| ||| ||||||||||| || |||||||||||||||||| |||||| |||||    
T  6895978 ctctattgttttgatttctgtgcaaatacttactttttctttgtaaattatggttgtcacatag 6896041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 1836101 - 1836159
Alignment:
Q  37 attgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||||| |||| ||| ||||| ||| |||||||||||||||||| |||||||||||    
T  1836101 attgctttgattttcgtgtaaatatctaatttttctttgtaaattatggttgtctcata 1836159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 2221069 - 2221127
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||| |||  ||||||||||||| ||||||||| ||||||||    
T  2221069 ctttatctctctattgctttgatttccgtgcaaatacctactttttctttataaattat 2221127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 4299318 - 4299260
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||| |||| ||||||||| ||||| |||||||| |||||||    
T  4299318 ctttatctctctattgctttgattttcgtgcaaatatctattctttctttgcaaattat 4299260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 7648466 - 7648523
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||| ||||||||||||||||||| ||  ||||||||||||||||||    
T  7648466 ctttatctctctattgttttggtttttgtgcaaata-cttctttttctttgtaaattat 7648523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 12498630 - 12498557
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcatagttgt 100  Q
    |||||| ||||||||  |||||||| |||||||||||||| |||||||||||||||||  ||||| |||| ||||    
T  12498630 tttatctctctattgtcttggttttcgtgcaaatacctat-ttttctttgtaaattatgattgtcacataattgt 12498557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 1416033 - 1415968
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaataccta-ttttttctttgtaaattatagttgtc 90  Q
    |||||| |||||||||||| |||||||| ||||| |||| |||||||||| |||||||| ||||||    
T  1416033 tttatctctctattgctttagtttttgtacaaatgcctatttttttctttataaattatggttgtc 1415968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 12889826 - 12889769
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||| ||||||||||||| |||||||||||||| ||||| |||||||  |||||||    
T  12889826 tttatctctctattgctttgatttttgtgcaaatatctattctttctttacaaattat 12889769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 13765488 - 13765541
Alignment:
Q  37 attgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||||||||| ||||||||||| | ||||| |||||||||||| ||||||    
T  13765488 attgctttggttttcgtgcaaataccaactttttatttgtaaattatggttgtc 13765541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 18723670 - 18723735
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| || |||||||||| |||| ||||||||||||||| |||||||  ||||||| ||||||    
T  18723670 ctttatctctttattgctttgattttcgtgcaaatacctattctttctttacaaattatggttgtc 18723735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 37105714 - 37105779
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||  ||||||||||| ||||| ||||| ||||| | |||||||||||||||||| ||||||    
T  37105714 ctttatctttctattgctttcgttttcgtgcacataccaactttttctttgtaaattatggttgtc 37105779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 39213765 - 39213700
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||| |||| ||||| ||||||||||| | ||||||||||||||| || ||||||    
T  39213765 ctttatctctctattcctttagttttcgtgcaaataccaactttttctttgtaaatgatggttgtc 39213700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 24563011 - 24562947
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| |||||||||||||||||| ||| ||||||| |  |||||||| |||||||| ||||||    
T  24563011 tttatctctctattgctttggttttcgtgtaaataccaaccttttctttataaattatggttgtc 24562947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 39449343 - 39449407
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| ||||||||||||| |||| ||||||||||| | ||||||||| ||||| || |||||    
T  39449343 ctttatctctctattgctttgattttcgtgcaaataccaactttttctttataaatgatggttgt 39449407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 2563780 - 2563838
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||||  ||||||| ||||||||| ||||||||||| | ||||||||| ||||||||    
T  2563780 ctttatctttctattgttttggttttcgtgcaaataccaactttttctttataaattat 2563838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 4023337 - 4023275
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    |||||||||||||||||| ||| ||| || ||  |||||||||||||||||  ||||||||||    
T  4023337 ctctattgctttggttttcgtgtaaagacttacattttctttgtaaattatgattgtctcata 4023275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 13347810 - 13347744
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaataccta-ttttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| |||||| |||| | || ||| |||||||||||| ||||||    
T  13347810 ctttatctctctattgctttggttttcgtgcaattaccaacttatttttttgtaaattatggttgtc 13347744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 16677754 - 16677804
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||||||||||||||| |||||||||   ||||||||||| ||||||||    
T  16677754 ctctattgctttggttttcgtgcaaatattaattttttctttataaattat 16677804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 42866826 - 42866884
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||| | || ||||||||| | | ||||||||||||||||||    
T  42866826 ctttatctctctattgctttgatcttcgtgcaaatatccactttttctttgtaaattat 42866884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 43513488 - 43513552
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| |||| ||||||||||| || |||||||||| | ||||||    
T  43513488 ctttatctctctattgctttgattttcgtgc-aatacctatttcttttttgtaaattttggttgtc 43513552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 3012825 - 3012777
Alignment:
Q  47 tttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    |||||||||||||||||| |||||||||  ||||||| |||||| ||||    
T  3012825 tttttgtgcaaatacctactttttctttaaaaattatggttgtcccata 3012777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 7664053 - 7664006
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaatt 81  Q
    ||||||||||||||||||||||  |||||||  ||||||||||||||||    
T  7664053 ctctattgctttggtttttgtgtcaatacct-ctttttctttgtaaatt 7664006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 26206935 - 26206991
Alignment:
Q  36 tattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctc 92  Q
    |||||||||| |||| ||||||||||||||| |||||||  |||||||  |||||||    
T  26206935 tattgctttgattttcgtgcaaatacctattctttctttacaaattatgattgtctc 26206991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 33780389 - 33780325
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| || ||||||||||  ||| ||||||||| |||| ||||||||||||| ||| ||||||    
T  33780389 tttatctctttattgctttgagtttcgtgcaaatatctatattttctttgtaaactatggttgtc 33780325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 57)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 38338917 - 38338853
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||    
T  38338917 ctttatctctctattgctttgatttttgtgcaaatacctattttttctttataaattatggttgt 38338853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 39344975 - 39344907
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctca 93  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||  ||||||||    
T  39344975 ctttatctctctattgctttggttttcgtgcaaataccaattttttctttgtaaattatgattgtctca 39344907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 56271437 - 56271501
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  56271437 tttatctctctattgctttggttttcgtgcaaatacctactttttctttgtaaattatggttgtc 56271501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 12138929 - 12138993
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| ||||||| ||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  12138929 ctttatctctctattactttgatttttgtgcaaatacctactttttctttgtaaattatggttgt 12138993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 28657436 - 28657361
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcatagttgt 100  Q
    ||||||| |||||||||||||||||  |||||||||||||  ||||||||||||||||| |||||| || ||||||    
T  28657436 ctttatctctctattgctttggtttccgtgcaaatacctacgttttctttgtaaattatggttgtcacaaagttgt 28657361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 18882970 - 18882912
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||    
T  18882970 ctttatctctctattgctttgattttcgtacaaatacctattttttctttgtaaattat 18882912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 39312609 - 39312547
Alignment:
Q  27 ttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  39312609 ttatctctttattgctttggttttcgtgcaaatacctattttttctttataaattatggttgt 39312547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 2999188 - 2999253
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||||||||  |||||||||| | |||||||||||||||||| ||||||    
T  2999188 ctttatctctctattgctttggttttcatgcaaataccaactttttctttgtaaattatggttgtc 2999253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 46405969 - 46405904
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||||    
T  46405969 ctttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 46405904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 13086099 - 13086163
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| ||||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||||    
T  13086099 tttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 13086163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 13104368 - 13104312
Alignment:
Q  34 tctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||||| ||||||    
T  13104368 tctattgctttggtgtttgtgcaaatatctactttttctttgtaaattatggttgtc 13104312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 13139225 - 13139289
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| |||||||  ||||||||| ||||||||||| | |||||||||||||||||||||||||    
T  13139225 tttatctctctatttttttggttttcgtgcaaataccaactttttctttgtaaattatagttgtc 13139289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26718411 - 26718502
Alignment:
Q  1 caattttctctctcatactcacat---------ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||||||||||||||||||||         ||||||| ||||||| ||||| |||||||||||||||| | ||||||||||||||||||    
T  26718411 caattttctctctcatactcacattactttttactttatctctctattactttgttttttgtgcaaataccaactttttctttgtaaattat 26718502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26731039 - 26731130
Alignment:
Q  1 caattttctctctcatactcacat---------ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||||||||||||||||||||         ||||||| ||||||| ||||| |||||||||||||||| | ||||||||||||||||||    
T  26731039 caattttctctctcatactcacattactttttactttatctctctattactttgttttttgtgcaaataccaactttttctttgtaaattat 26731130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 51573627 - 51573569
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||| |||| || ||||||||||||||||||||| |||||||    
T  51573627 ctttatctctctattgctttgattttcgtacaaatacctattttttctttgcaaattat 51573569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 14010113 - 14010048
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||  ||||||||| ||||||||||| ||||||||||| |||||||| ||||||    
T  14010113 ctttatctctctattattttggttttcgtgcaaataccaattttttctttataaattatggttgtc 14010048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 22819725 - 22819790
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| || |||||||||| |||| ||||||||||| | |||||||||||||||||| ||||||    
T  22819725 ctttatctctttattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 22819790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 33860722 - 33860787
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| ||||||||  |||||||||| || |||||||||||||||||| ||||||    
T  33860722 ctttatctctctattgttttggtttccgtgcaaatacttactttttctttgtaaattatcgttgtc 33860787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 49768313 - 49768248
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| ||||||||||||||| |||||||  ||||||| ||||||    
T  49768313 ctttatctctctattgctttgattttcgtgcaaatacctattatttctttacaaattatggttgtc 49768248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 49896661 - 49896592
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcat 94  Q
    ||||||| ||||||||||||| |||| |||  |||||| | |||||||||||||||||| ||||||||||    
T  49896661 ctttatctctctattgctttgattttcgtgtcaataccaactttttctttgtaaattatggttgtctcat 49896592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 27326739 - 27326683
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||| || |||||    
T  27326739 ctctattgctttggttttcgtgcaaataccaactttttctttgtaaatgatggttgt 27326683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 40609686 - 40609741
Alignment:
Q  27 ttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatta 82  Q
    ||||| |||||||| |||||||| ||||||||||| |||||||||||| |||||||    
T  40609686 ttatctctctattgttttggtttctgtgcaaatacatattttttctttataaatta 40609741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 53405823 - 53405760
Alignment:
Q  27 ttatcactctattgctttggtttttgtgcaaatacctatttttt-ctttgtaaattatagttgt 89  Q
    ||||| ||||||||||||| ||| ||| |||||| ||||||||| |||||||||||||||||||    
T  53405823 ttatctctctattgctttgatttctgtacaaatatctatttttttctttgtaaattatagttgt 53405760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 12799798 - 12799848
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||| ||||||| |||| ||| ||||||||||||||||||||||||||||    
T  12799798 ctctaatgctttgattttcgtgtaaatacctattttttctttgtaaattat 12799848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 23853810 - 23853872
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagtt 87  Q
    ||||||| |||||||  |||||||||||| ||||||| || ||||||| ||||||||||||||    
T  23853810 ctttatctctctattattttggtttttgttcaaatacatactttttctgtgtaaattatagtt 23853872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 28458372 - 28458314
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||| |||| |||  |||||||| ||||||||||||||||||    
T  28458372 ctttatctctctattgctttgattttcgtgtcaatacctactttttctttgtaaattat 28458314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 31092585 - 31092655
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctatttt-ttctttgtaaattatagttgtctcat 94  Q
    ||||||| |||||||| | || |||| |||||||| | |||||| ||||||||||||||||||||||||||    
T  31092585 ctttatctctctattgttgtgattttcgtgcaaatgcatatttttttctttgtaaattatagttgtctcat 31092655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 32546353 - 32546295
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||||  |||||||||||| |||||||||||||||||||| |||||||  |||||||    
T  32546353 ctttatctttctattgctttgatttttgtgcaaatacctattctttctttacaaattat 32546295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 52846216 - 52846166
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||||||||||||||| ||||||||||  | ||||||||||||||||||    
T  52846216 ctctattgctttggttttcgtgcaaatacaaactttttctttgtaaattat 52846166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 21617259 - 21617324
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| |||| |||| ||||||||||||||| |||||||  ||||||| ||||||    
T  21617259 ctttatctctctattgttttgattttcgtgcaaatacctattctttctttacaaattatggttgtc 21617324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 31657722 - 31657787
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||| ||||||| | ||||||| ||||||| || ||||||    
T  31657722 ctttatctctctattgctttggttttcgtgtaaataccaactttttctatgtaaatgatggttgtc 31657787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 32696257 - 32696322
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| || |||||||||| |||| |||| |||| ||| |||||||||||||||||| ||||||    
T  32696257 ctttatctctttattgctttgattttcgtgccaatatctactttttctttgtaaattatggttgtc 32696322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 38715331 - 38715388
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||||||||||||  ||||||||| |||  |||||||| |||||||||||||||    
T  38715331 ctctattgctttggtttccgtgcaaataactaccttttctttataaattatagttgtc 38715388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 41389868 - 41389804
Alignment:
Q  24 tctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||||||| ||||||| || ||||||||| |||| ||| |||||||||||||||||| |||||    
T  41389868 tctttatcactttattgctatgatttttgtgccaata-ctactttttctttgtaaattatggttgt 41389804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 45143660 - 45143603
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||  ||||||||| ||||||||||| | |||||||||||||||||| ||||||    
T  45143660 ctctattattttggttttcgtgcaaataccaactttttctttgtaaattatggttgtc 45143603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 45152429 - 45152372
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||  ||||||||| ||||||||||| | |||||||||||||||||| ||||||    
T  45152429 ctctattattttggttttcgtgcaaataccaactttttctttgtaaattatggttgtc 45152372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 1815994 - 1815938
Alignment:
Q  27 ttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||| |||||||| |||| |||||||||||||| | | ||||||||||||||||||    
T  1815994 ttatctctctattgttttgatttttgtgcaaatatccactttttctttgtaaattat 1815938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 37514127 - 37514071
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatt 81  Q
    ||||||| ||||||||||||| |||| |||| || ||||| ||||||||||||||||    
T  37514127 ctttatctctctattgctttgattttcgtgccaaaacctactttttctttgtaaatt 37514071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 42815480 - 42815536
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatt 81  Q
    ||||||| ||||||||||||| |||| ||||||| ||||| |||| |||||||||||    
T  42815480 ctttatctctctattgctttgattttcgtgcaaaaacctacttttcctttgtaaatt 42815536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 4949592 - 4949651
Alignment:
Q  36 tattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||| ||||||||  || ||||||| || ||||||||||||||||||||||||| ||||    
T  4949592 tattgttttggtttccgtacaaatacttactttttctttgtaaattatagttgtcgcata 4949651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 624307 - 624253
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaa 79  Q
    ||||||| |||||||||| ||||||| |||| ||||||  |||||||||||||||    
T  624307 ctttatctctctattgctatggttttcgtgccaataccacttttttctttgtaaa 624253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 13263392 - 13263335
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||||||||| |||| |||| |||| |||||||||||||| |||||||    
T  13263392 ctttatctctctattgctttgattttcgtgc-aatatctattttttctttgcaaattat 13263335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 43769787 - 43769857
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| || ||||| |||  |||| ||||||||||| | |||||||||||||||||| |||||| ||||    
T  43769787 ctttatctctttattgttttaattttcgtgcaaatacccactttttctttgtaaattatggttgtcgcata 43769857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 47099098 - 47099161
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||||||   ||||||||||  || ||||||||||||||||| ||||||    
T  47099098 ctttatctctctattgctttggttc--gtgcaaatactaatattttctttgtaaattatggttgtc 47099161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 51852152 - 51852209
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||| ||||||||||||||||||| |||  ||||||||||| |||||    
T  51852152 ctttatctctctattgttttggtttttgtgcaaata-ctacattttctttgtagattat 51852209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 53647420 - 53647350
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||| |||  ||  |||||||||| |||||||| |||||||| |||||| ||||    
T  53647420 ctttatctctctattgctttgatttccgtataaatacctatcttttctttataaattatggttgtcacata 53647350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 53654745 - 53654675
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||| ||| | || |||||||||||| |||||| | |||||||||||||||| |||||| ||||    
T  53654745 ctttatctctccattacgttagtttttgtgcaactacctactatttctttgtaaattatggttgtcccata 53654675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 9118859 - 9118794
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| || |||| |||| ||||||  ||||||||||||||| ||| ||||||    
T  9118859 ctttatctctctattgctatgattttcgtgccaataccatttttttctttgtaaaatatggttgtc 9118794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 9362674 - 9362609
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| |||| |||  ||||||||||||| ||||||||| |||| ||| ||||||    
T  9362674 ctttatctctctattgttttgatttccgtgcaaatacctactttttctttataaactatggttgtc 9362609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 30079922 - 30079987
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| | ||||  |||| ||||||  ||||||||||||||||||| ||||||    
T  30079922 ctttatctctctattgctatagtttccgtgccaataccacttttttctttgtaaattatggttgtc 30079987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 36111390 - 36111325
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||| ||| ||||||    
T  36111390 ctttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatatggttgtc 36111325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 41486138 - 41486073
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||| ||| ||||||    
T  41486138 ctttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatatggttgtc 41486073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 47112008 - 47112065
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||| |||||||| |||| || |||||||||||| |||||||| ||||||| ||||||    
T  47112008 ctctgttgctttgattttcgtacaaatacctattatttctttgcaaattatggttgtc 47112065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 51194345 - 51194410
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| | ||||||| |||| ||||||  ||||||||||||||| ||| ||||||    
T  51194345 ctttatctctctattgttatggttttcgtgccaataccacttttttctttgtaaaatatggttgtc 51194410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 17683438 - 17683482
Alignment:
Q  46 gtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||| ||||||||||| | |||||||||||||||||| ||||||    
T  17683438 gttttcgtgcaaataccaactttttctttgtaaattatggttgtc 17683482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 42491160 - 42491215
Alignment:
Q  35 ctattgctttggtttttgtgcaaatacctattttttctttgt-aaattatagttgtc 90  Q
    ||||||||||||||||||||| |||||||  ||||||||||| ||||||| ||||||    
T  42491160 ctattgctttggtttttgtgccaatacct-ctttttctttgtgaaattatggttgtc 42491215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 53299274 - 53299318
Alignment:
Q  36 tattgctttggtttttgtgcaaatacctattttttctttgtaaat 80  Q
    ||||| ||||||||| || |||||||| |||||||||||||||||    
T  53299274 tattgttttggttttcgtacaaataccaattttttctttgtaaat 53299318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 38501 - 38566
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||    
T  38501 ctttatctctctattgctttggttttcgtgcgaataccaactttttctttgtaaattatagttgtc 38566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 14699659 - 14699594
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  14699659 ctttatctctctgttgctttggttttcgtgcaaatacctactttttctttgtaaattattgttgtc 14699594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 32459511 - 32459446
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||||    
T  32459511 ctttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtc 32459446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 754433 - 754369
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||| |||||    
T  754433 ctttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgt 754369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 1369436 - 1369504
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctca 93  Q
    ||||||| ||||||||||||| |||| ||||||||||| | |||||||||||||||||| |||||||||    
T  1369436 ctttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtctca 1369504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 14693247 - 14693177
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| |||| ||||||||||||  ||||||||||||| ||||||||||||||||||| ||||| ||||    
T  14693247 ctttatctctctgttgctttggtttccgtgcaaatacctactttttctttgtaaattatatttgtcacata 14693177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 35213556 - 35213498
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  35213556 ctttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattat 35213498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 2689060 - 2688995
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| |||||||| |||||||||||||| ||||||||| |||||||| ||||||    
T  2689060 ctttatctctctattgttttggtttatgtgcaaatacctactttttctttataaattatggttgtc 2688995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 868947 - 868889
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||| |||||||||||| ||||||| || ||||||||||||||||||    
T  868947 ctttatctctctattgatttggtttttgtacaaatacttactttttctttgtaaattat 868889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 5028261 - 5028191
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| || ||||||||||||||| ||| ||||| ||| ||||||||| |||||||| |||||||||||    
T  5028261 ctttatctctttattgctttggttttcgtgtaaatatctactttttctttataaattatggttgtctcata 5028191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 8747245 - 8747307
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagtt 87  Q
    ||||||| ||||||||||||| ||||||||||||||| |||| |||||||  |||||||||||    
T  8747245 ctttatctctctattgctttgatttttgtgcaaatacttattctttctttacaaattatagtt 8747307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 13143377 - 13143312
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| ||||||||||  | |||||||||||||||||| ||||||    
T  13143377 ctttatctctctattgctttgattttcgtgcaaatacaaactttttctttgtaaattatggttgtc 13143312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 33421836 - 33421900
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| |||||| ||||||||||||||||| ||||| ||||||||    
T  33421836 ctttatctctctattgctttgattttcgtgcaa-tacctattttttctttgcaaattttagttgtc 33421900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 31749441 - 31749508
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctc 92  Q
    ||||||| |||||||| |||  |||| ||| ||||| |||||||||||||||||||||| ||||||||    
T  31749441 ctttatctctctattgttttaattttcgtgtaaatatctattttttctttgtaaattatggttgtctc 31749508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 6531164 - 6531110
Alignment:
Q  36 tattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||||| |||| |||||||||| || |||||||||||||||||| ||||||    
T  6531164 tattgctttgattttcgtgcaaatacatactttttctttgtaaattatggttgtc 6531110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 18141296 - 18141231
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| ||||| ||||| | || ||||||||||||||| ||||||    
T  18141296 ctttatctctctattgctttgattttcgtgcacataccaacttattctttgtaaattatggttgtc 18141231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 20822863 - 20822799
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||||| || |||| ||| |||||||| ||||||    
T  20822863 ctttatctctctattgctttggttttcgtgcaaataccaatatttt-tttataaattatggttgtc 20822799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 28944966 - 28944916
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||||||||| |||| || ||||||||||||||||||||  |||||||    
T  28944966 ctctattgctttgattttcgtacaaatacctattttttctttacaaattat 28944916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 32046774 - 32046844
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||  |||| ||||||||||||| | | ||||||||| |||||||| |||||| ||||    
T  32046774 ctttatctctctattgtgttggattttgtgcaaataacaactttttctttataaattatggttgtcccata 32046844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 15318170 - 15318118
Alignment:
Q  38 ttgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| ||||||  |||| |||||||||||| ||||||||||||| ||||||    
T  15318170 ttgcttaggttttcatgcatatacctatttttcctttgtaaattatggttgtc 15318118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 28041809 - 28041745
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| |||||||||||||| ||  |||||| ||| || ||||||||||||||| || |||||    
T  28041809 ctttatctctctattgctttggcttccgtgcaagtacttactttttctttgtaaatgatggttgt 28041745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 34047465 - 34047516
Alignment:
Q  27 ttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaa 79  Q
    ||||| ||||||||||||||||||||||| |||| ||  ||||||||||||||    
T  34047465 ttatctctctattgctttggtttttgtgccaatatct-ctttttctttgtaaa 34047516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 56)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 13489738 - 13489803
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||||    
T  13489738 ctttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtc 13489803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 50328136 - 50328071
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||||    
T  50328136 ctttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtc 50328071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 8200151 - 8200221
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| |||||||||||||||||| |||||| ||| || |||||||||||||||||| |||||| ||||    
T  8200151 ctttatccctctattgctttggttttcgtgcaactacgtactttttctttgtaaattatggttgtcccata 8200221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 40316972 - 40316874
Alignment:
Q  1 caattttctctctcatactcacat---------ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||||||||||||||||||||         ||||||| |||||||||||||||||| ||||||||||| | ||||||||| |||||||| ||||||    
T  40316972 caattttctctctcatactcacattactttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttataaattatggttgtc 40316874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 50781565 - 50781507
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  50781565 ctttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattat 50781507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 34254346 - 34254281
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| || ||||||||||||||| ||||||||||  | |||||||||||||||||||||||||    
T  34254346 ctttatctctttattgctttggttttcgtgcaaatacaaactttttctttgtaaattatagttgtc 34254281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 35136920 - 35136985
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||||||||||||||  | |||||||||||||||||| ||||||    
T  35136920 ctttatctctctattgctttgatttttgtgcaaatacaaactttttctttgtaaattatggttgtc 35136985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 52362558 - 52362623
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||||| | ||||||||| |||||||| ||||||    
T  52362558 ctttatctctctattgctttggttttcgtgcaaataccaactttttctttataaattatggttgtc 52362623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 18336222 - 18336286
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| ||||||||||||| |||||||||| |||||||  ||||||||||||||||| |||||    
T  18336222 ctttatctctctattgctttgatttttgtgcagatacctaccttttctttgtaaattatggttgt 18336286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 3226055 - 3225997
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||||||||||||| || ||||||  |||||||||||||||||||||    
T  3226055 ctttatctctctattgctttggttttcgtacaaatatatattttttctttgtaaattat 3225997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 4469423 - 4469365
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||| ||||||||||||| |||| |||||| |||||||||||||||||||||    
T  4469423 ctttatctctcaattgctttggtttctgtgtaaatacatattttttctttgtaaattat 4469365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 15015482 - 15015544
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    |||||||| ||||||||| ||||||||||| | |||||||||||||||||| |||||| ||||    
T  15015482 ctctattgttttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccata 15015544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 32915067 - 32915009
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||| ||||||||| ||||||||||| | ||||||||||||||||||    
T  32915067 ctttatctctctattgttttggttttcgtgcaaataccaactttttctttgtaaattat 32915009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 33125320 - 33125262
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||||  |||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  33125320 ctttatctttctattgctttggtttttatgcaaatacctactttttctttataaattat 33125262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 50824817 - 50824887
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||||||||  ||  |||||||| |||||||||||||||||| ||||| |||||    
T  50824817 ctttatctctctattgctttggttttcatgtcaatacctactttttctttgtaaattatggttgtatcata 50824887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 6143768 - 6143825
Alignment:
Q  34 tctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtct 91  Q
    |||| ||| |||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  6143768 tctagtgcattggttttcgtgcaaatacctactttttctttgtaaattatggttgtct 6143825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 10890041 - 10889976
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| ||||| ||||| | |||||||||||||||||| ||||||    
T  10890041 ctttatctctctattgctttgattttcgtgcacataccaactttttctttgtaaattatggttgtc 10889976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 15705057 - 15704992
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||| ||||||| ||||||||| ||||||||||| | ||||||||| |||||||| ||||||    
T  15705057 ctttatcattctattgttttggttttcgtgcaaataccaactttttctttataaattatggttgtc 15704992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 19969557 - 19969492
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||| ||||| |  ||||||||||||||||| ||||||    
T  19969557 ctttatctctctattgctttggttttcgtgcacataccaacgttttctttgtaaattatggttgtc 19969492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 45417849 - 45417918
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    |||||| |||||||| |||| |||| |||||||||| |||||||||||| |||||||| |||||| ||||    
T  45417849 tttatctctctattgttttgattttcgtgcaaatacatattttttctttataaattatggttgtcacata 45417918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 48326044 - 48326109
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| || |||||||| | |||||||||||||||||| ||||||    
T  48326044 ctttatctctctattgctttgattttcgtacaaataccaactttttctttgtaaattatggttgtc 48326109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 52714896 - 52714831
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| ||||||||| |||||| |||| | |||||||||||||||||| ||||||    
T  52714896 ctttatctctctattgttttggttttcgtgcaattaccaactttttctttgtaaattattgttgtc 52714831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 29154865 - 29154924
Alignment:
Q  36 tattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||| ||||||||| |||||||||||||  ||||||||||||||||| |||||| ||||    
T  29154865 tattgttttggttttcgtgcaaatacctacgttttctttgtaaattatcgttgtcccata 29154924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 35539268 - 35539193
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcatagttgt 100  Q
    ||||||| |||| ||| ||||||||  |||||||||| || ||||||||||||||||||| ||||| || ||||||    
T  35539268 ctttatctctctgttgttttggtttccgtgcaaatacatactttttctttgtaaattatatttgtcacaaagttgt 35539193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 4509457 - 4509399
Alignment:
Q  33 ctctattgctttggttttt-gtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||||||||  ||||| || |||||||||| |||||||||||||||||||||||||    
T  4509457 ctctattgcttttttttttcgtacaaatacctactttttctttgtaaattatagttgtc 4509399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 8447812 - 8447870
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||| ||| ||||||||||||||| | | ||||||||||||||||||    
T  8447812 ctttatctctctattgttttagtttttgtgcaaatatcaactttttctttgtaaattat 8447870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 33358153 - 33358083
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||| |||| |||| |||| ||||||||||| | |||||||||||||||||| |||||| ||||    
T  33358153 ctttatctctcaattgatttgattttcgtgcaaatacccactttttctttgtaaattatggttgtcacata 33358083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 38713646 - 38713704
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| || |||||||||| |||| ||||||||||| ||||||||||| ||||||||    
T  38713646 ctttatctctttattgctttgattttcgtgcaaatacccattttttctttataaattat 38713704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 47721485 - 47721555
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||| |||| |||  ||||| || |||||||||||||||||| |||||| ||||    
T  47721485 ctttatctctctattgctttgattttcgtgtcaatacttactttttctttgtaaattatggttgtcccata 47721555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 47728477 - 47728547
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||| |||| |||  ||||| || |||||||||||||||||| |||||| ||||    
T  47728477 ctttatctctctattgctttgattttcgtgtcaatacttactttttctttgtaaattatggttgtcccata 47728547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 48624952 - 48625022
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| ||||||||||||| ||||  ||||||||| || ||||||||| |||||||| ||||| |||||    
T  48624952 ctttatctctctattgctttgattttcatgcaaatacatactttttctttataaattatggttgtttcata 48625022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 52267279 - 52267341
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttg 88  Q
    |||||| |||||||  |||||||| |||||||||||||||||||| ||| |||||||| ||||    
T  52267279 tttatctctctatttttttggtttctgtgcaaatacctattttttatttataaattatggttg 52267341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 2211174 - 2211117
Alignment:
Q  38 ttgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| |||||||| |||||||||||| |||||||||||| ||| | |||||||||    
T  2211174 ttgctttagtttttgtacaaatacctattgtttctttgtaaactatggctgtctcata 2211117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 30658843 - 30658779
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| |||||| ||||||||||||||||| ||||| | ||||||    
T  30658843 ctttatctctctattgctttgattttcgtgcaa-tacctattttttctttgcaaattttggttgtc 30658779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 33054083 - 33054034
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttcttt 74  Q
    ||||||| |||||| |||||| |||||||||||||||||||| |||||||    
T  33054083 ctttatctctctatggctttgatttttgtgcaaatacctattctttcttt 33054034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 36577407 - 36577342
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| || |||||||||| |||| ||||||||||| | ||||||||| |||||||| ||||||    
T  36577407 ctttatctctttattgctttgattttcgtgcaaataccaactttttctttataaattatggttgtc 36577342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 44789138 - 44789074
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| ||||||||||||| |||| |||||| ||||||||||||||||| ||||| | ||||||    
T  44789138 ctttatctctctattgctttgattttcgtgcaa-tacctattttttctttgcaaattttggttgtc 44789074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 26967286 - 26967350
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| |||||||| ||||||||   |||||||||||| ||||||||| |||||||| ||||||    
T  26967286 tttatctctctattgttttggtttccatgcaaatacctactttttctttataaattatggttgtc 26967350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 46911369 - 46911424
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaatt 81  Q
    ||||||| ||||||||||||| |||| |||| ||||||||||||||||||| |||||    
T  46911369 ctttatctctctattgctttgattttcgtgc-aatacctattttttctttgcaaatt 46911424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 49241500 - 49241432
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctca 93  Q
    |||||||  |||||||| |||||||| ||||||||||||| ||||  ||||||||||||  ||||||||    
T  49241500 ctttatctgtctattgcattggttttcgtgcaaatacctacttttcttttgtaaattatgattgtctca 49241432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 29147869 - 29147799
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| |||||||| ||||||||  |||||||||  || |||| ||||||||||||| |||||| ||||    
T  29147869 ctttatctctctattgttttggtttccgtgcaaatatttacttttcctttgtaaattatggttgtcacata 29147799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 35539354 - 35539280
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcatagttg 99  Q
    ||||||| || ||||| ||| ||||  |||||||||| || |||||||||||||||||| |||||| || |||||    
T  35539354 ctttatctctttattgttttagtttccgtgcaaatacttaatttttctttgtaaattatggttgtcacaaagttg 35539280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 43769703 - 43769765
Alignment:
Q  34 tctattgctttggtttttgtgcaaatacctattttttctttgtaaatt-atagttgtctcata 95  Q
    |||||||||||||||||| || |||||| || ||||||||| |||||| || |||||||||||    
T  43769703 tctattgctttggtttttctgaaaatacttactttttctttataaattaatggttgtctcata 43769765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 48220139 - 48220089
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttg 75  Q
    ||||||| ||||||| ||||| |||||||||||||||| | ||||||||||    
T  48220139 ctttatctctctatttctttgatttttgtgcaaataccaactttttctttg 48220089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 50882105 - 50882047
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| ||||||| ||||| |||| ||||||||||  ||||||||||| ||||||||    
T  50882105 ctttatctctctattactttgattttcgtgcaaatactcattttttctttataaattat 50882047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 756932 - 756997
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||| ||| ||||||    
T  756932 ctttatctctctattgctatggtttccgtgccaataccatttttttctttgtaaagtatggttgtc 756997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 7128194 - 7128259
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||| ||| ||||||    
T  7128194 ctttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaagtatggttgtc 7128259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 25259167 - 25259224
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||| |||| ||||  |||||||||| ||||||||||| |||||||| ||||||    
T  25259167 ctctattgttttgattttcatgcaaataccaattttttctttataaattatggttgtc 25259224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 41507157 - 41507124
Alignment:
Q  57 aatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||| |||||||||||||||||||||||||    
T  41507157 aatacctactttttctttgtaaattatagttgtc 41507124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 46082116 - 46082051
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||| ||||||  |||  ||||||  ||||||||||||||| ||||||||||    
T  46082116 ctttatctctctattgctatggtttccgtgtcaataccacttttttctttgtaaaatatagttgtc 46082051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 46543437 - 46543373
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||| | | ||||| ||| ||||||||| |||||    
T  46543437 ctttatctctctattgctttggttttcgtgcaaatatcaacttttt-tttttaaattataattgtc 46543373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 47215717 - 47215660
Alignment:
Q  33 ctctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||||| ||| ||||  |||||||||| |||||||||||| |||||||| ||||||    
T  47215717 ctctattgttttagtttccgtgcaaatacatattttttctttataaattatggttgtc 47215660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 50433845 - 50433910
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||  ||  || |||||||||| ||||||||| |||||||| ||||||    
T  50433845 ctttatctctctattgctttgacttccgtacaaatacctactttttctttataaattatggttgtc 50433910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 3603188 - 3603252
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||| ||| ||||||    
T  3603188 tttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatatggttgtc 3603252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 8411713 - 8411649
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgt 89  Q
    ||||||| |||||||| ||||||||  |||| ||||||  ||||||||||||||| ||| |||||    
T  8411713 ctttatctctctattgttttggtttccgtgccaataccacttttttctttgtaaaatatggttgt 8411649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 21093352 - 21093288
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| ||||||||||||| |||| ||   |||| ||| |||||||||||||||||| ||||||    
T  21093352 tttatctctctattgctttgattttcgtattaatatctactttttctttgtaaattatggttgtc 21093288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1956 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 846 - 916
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtctcata 95  Q
    ||||||| |||||||  ||||||||| ||||||||| | |||||||||||||||||||| |||||| ||||    
T  846 ctttatctctctattattttggttttcgtgcaaatatccattttttctttgtaaattatggttgtcccata 916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 8290 - 8355
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||||||||||||| ||||||||| | | ||||||||||||||| || ||||||    
T  8290 ctttatccctctattgctttggttttcgtgcaaatatcaactttttctttgtaaatgatggttgtc 8355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 12008 - 12073
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| ||||||||| ||||| ||||| | |||||||||||||||||| ||||||    
T  12008 ctttatctctctattgttttggttttcgtgcacataccaactttttctttgtaaattatggttgtc 12073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 11040 - 11098
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    ||||||| |||||||| |||| |||| ||||||||||| | ||||||||||||||||||    
T  11040 ctttatctctctattgttttgattttcgtgcaaatacccactttttctttgtaaattat 11098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 72042 - 71984
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattat 83  Q
    |||||||  |||||||||||| |||| ||| ||||||||||||||||||| ||||||||    
T  72042 ctttatctttctattgctttgattttagtgtaaatacctattttttctttataaattat 71984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 2024 - 1961
Alignment:
Q  26 tttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    |||||| ||||||||||||| |||| || ||| ||||||||||||||||  ||||||||||||||    
T  2024 tttatctctctattgctttgattttcgtacaa-tacctattttttctttacaaattatagttgtc 1961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 134298 - 134227
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaat-tatagttgtctcata 95  Q
    ||||||| || ||||| ||||||||| |||  |||||||||||||||||||||| | |||||||||| ||||    
T  134298 ctttatctctttattgttttggttttcgtgtcaatacctattttttctttgtaactctatagttgtcccata 134227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 83 - 148
Alignment:
Q  25 ctttatcactctattgctttggtttttgtgcaaatacctattttttctttgtaaattatagttgtc 90  Q
    ||||||| |||||||| | ||||||| |||| ||||||  ||||||||||||||| ||| ||||||    
T  83 ctttatctctctattgttatggttttcgtgccaataccacttttttctttgtaaaatatggttgtc 148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University