View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16065_high_23 (Length: 220)

Name: NF16065_high_23
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16065_high_23
NF16065_high_23
[»] chr4 (42 HSPs)
chr4 (1-173)||(43143593-43143769)
chr4 (3-169)||(42333787-42333957)
chr4 (4-172)||(3292908-3293080)
chr4 (4-172)||(6690247-6690419)
chr4 (4-172)||(30216754-30216926)
chr4 (10-172)||(10352902-10353068)
chr4 (4-172)||(50205089-50205261)
chr4 (4-173)||(20129292-20129465)
chr4 (4-173)||(25930690-25930863)
chr4 (4-172)||(48989311-48989483)
chr4 (1-172)||(28877259-28877434)
chr4 (4-129)||(44156681-44156806)
chr4 (4-155)||(36382358-36382512)
chr4 (4-173)||(26439291-26439464)
chr4 (4-173)||(34407296-34407469)
chr4 (1-130)||(35545982-35546111)
chr4 (4-172)||(29995995-29996167)
chr4 (4-173)||(13012170-13012343)
chr4 (4-173)||(43355886-43356059)
chr4 (4-173)||(47500755-47500928)
chr4 (5-172)||(26448036-26448206)
chr4 (4-130)||(29319717-29319843)
chr4 (11-130)||(17511252-17511372)
chr4 (10-172)||(30077649-30077814)
chr4 (4-104)||(6235575-6235675)
chr4 (5-124)||(1817752-1817871)
chr4 (4-130)||(40529044-40529170)
chr4 (4-81)||(13392893-13392970)
chr4 (4-81)||(13396032-13396109)
chr4 (33-166)||(30109945-30110084)
chr4 (33-130)||(48129995-48130087)
chr4 (59-172)||(45194159-45194276)
chr4 (66-130)||(6254573-6254637)
chr4 (74-172)||(27363344-27363446)
chr4 (126-173)||(7769310-7769357)
chr4 (126-172)||(49908790-49908836)
chr4 (126-172)||(5517502-5517548)
chr4 (126-172)||(6212036-6212082)
chr4 (126-172)||(17554979-17555025)
chr4 (129-171)||(50720487-50720529)
chr4 (129-172)||(13393011-13393054)
chr4 (129-172)||(13396150-13396193)
[»] chr8 (16 HSPs)
chr8 (1-173)||(34136834-34137010)
chr8 (1-169)||(4403994-4404166)
chr8 (4-172)||(23402091-23402263)
chr8 (4-157)||(16788037-16788194)
chr8 (5-128)||(9877251-9877374)
chr8 (4-155)||(15838286-15838440)
chr8 (5-168)||(36408538-36408705)
chr8 (4-172)||(29728398-29728570)
chr8 (4-130)||(3648806-3648932)
chr8 (1-172)||(2729205-2729380)
chr8 (4-154)||(39914516-39914669)
chr8 (4-127)||(42230971-42231092)
chr8 (33-130)||(3435298-3435397)
chr8 (66-130)||(40470567-40470631)
chr8 (74-168)||(10397122-10397220)
chr8 (25-84)||(376459-376519)
[»] chr3 (19 HSPs)
chr3 (4-173)||(11018224-11018397)
chr3 (4-172)||(45182964-45183136)
chr3 (1-173)||(6503578-6503754)
chr3 (4-172)||(6930906-6931078)
chr3 (4-172)||(33040936-33041108)
chr3 (10-172)||(19565519-19565685)
chr3 (4-155)||(19390146-19390301)
chr3 (1-155)||(34084131-34084289)
chr3 (10-172)||(45335858-45336023)
chr3 (4-130)||(6269438-6269564)
chr3 (4-173)||(27935160-27935333)
chr3 (4-173)||(39771772-39771945)
chr3 (4-154)||(22968456-22968610)
chr3 (4-172)||(35514249-35514417)
chr3 (4-130)||(40081753-40081877)
chr3 (33-130)||(5135298-5135397)
chr3 (126-172)||(5354692-5354738)
chr3 (126-172)||(6890981-6891027)
chr3 (102-171)||(22922141-22922214)
[»] chr6 (13 HSPs)
chr6 (4-172)||(28996713-28996885)
chr6 (4-155)||(18339106-18339261)
chr6 (10-172)||(29743266-29743432)
chr6 (4-173)||(34948770-34948943)
chr6 (4-173)||(398599-398772)
chr6 (4-173)||(13837803-13837976)
chr6 (5-130)||(33229349-33229474)
chr6 (74-171)||(24697899-24698000)
chr6 (63-169)||(31028435-31028545)
chr6 (126-172)||(13647000-13647046)
chr6 (126-172)||(34385526-34385572)
chr6 (74-130)||(24695516-24695572)
chr6 (129-169)||(2753336-2753376)
[»] chr7 (18 HSPs)
chr7 (11-173)||(34389075-34389241)
chr7 (4-172)||(37002156-37002328)
chr7 (4-172)||(26624728-26624901)
chr7 (4-146)||(35090177-35090323)
chr7 (4-128)||(38638248-38638372)
chr7 (4-172)||(8867743-8867915)
chr7 (4-173)||(5555469-5555642)
chr7 (4-172)||(43184480-43184652)
chr7 (4-173)||(3114108-3114281)
chr7 (4-172)||(33685547-33685719)
chr7 (4-155)||(8394125-8394280)
chr7 (4-155)||(36630816-36630971)
chr7 (4-154)||(14777119-14777273)
chr7 (4-172)||(7002708-7002880)
chr7 (4-172)||(7048579-7048751)
chr7 (4-130)||(40920015-40920141)
chr7 (4-130)||(36658210-36658336)
chr7 (33-92)||(10868514-10868575)
[»] chr5 (21 HSPs)
chr5 (11-173)||(37254623-37254789)
chr5 (4-172)||(12278872-12279044)
chr5 (4-172)||(17332563-17332735)
chr5 (4-172)||(31680350-31680522)
chr5 (2-172)||(31501726-31501900)
chr5 (4-130)||(33430350-33430476)
chr5 (4-172)||(10033910-10034082)
chr5 (4-172)||(13817960-13818132)
chr5 (4-129)||(16333888-16334013)
chr5 (4-173)||(26283330-26283503)
chr5 (4-128)||(39657518-39657642)
chr5 (10-153)||(1776394-1776541)
chr5 (4-130)||(16155026-16155152)
chr5 (10-173)||(36293639-36293806)
chr5 (4-173)||(39434678-39434851)
chr5 (10-155)||(3155649-3155798)
chr5 (5-127)||(43068909-43069031)
chr5 (4-130)||(19985968-19986094)
chr5 (4-172)||(36291354-36291526)
chr5 (33-130)||(28801316-28801415)
chr5 (126-172)||(26543903-26543949)
[»] chr2 (22 HSPs)
chr2 (4-172)||(45418566-45418738)
chr2 (4-172)||(8147334-8147507)
chr2 (4-172)||(44084615-44084787)
chr2 (4-172)||(8059345-8059517)
chr2 (4-180)||(42439961-42440141)
chr2 (4-152)||(41251646-41251798)
chr2 (11-172)||(770977-771147)
chr2 (4-130)||(12756849-12756975)
chr2 (4-173)||(6403816-6403989)
chr2 (4-173)||(35962697-35962870)
chr2 (10-149)||(18981622-18981765)
chr2 (4-155)||(31581634-31581789)
chr2 (4-155)||(32127153-32127308)
chr2 (4-173)||(17445053-17445224)
chr2 (4-152)||(16405603-16405755)
chr2 (22-173)||(2958131-2958285)
chr2 (4-130)||(2285891-2286017)
chr2 (11-130)||(26162721-26162837)
chr2 (45-157)||(26237955-26238071)
chr2 (33-130)||(4555250-4555349)
chr2 (33-146)||(7072589-7072710)
chr2 (126-172)||(34523223-34523269)
[»] chr1 (13 HSPs)
chr1 (11-173)||(35907534-35907700)
chr1 (11-172)||(17445296-17445461)
chr1 (4-173)||(7433427-7433600)
chr1 (4-173)||(26144237-26144410)
chr1 (4-172)||(3828967-3829138)
chr1 (11-172)||(321396-321561)
chr1 (12-155)||(32982076-32982223)
chr1 (15-172)||(42310964-42311125)
chr1 (33-172)||(41972314-41972458)
chr1 (33-172)||(33489670-33489815)
chr1 (53-173)||(23313220-23313345)
chr1 (126-172)||(44352621-44352667)
chr1 (127-172)||(31866960-31867005)
[»] scaffold0502 (1 HSPs)
scaffold0502 (4-155)||(5230-5385)
[»] scaffold0154 (1 HSPs)
scaffold0154 (4-172)||(31463-31635)
[»] scaffold0041 (1 HSPs)
scaffold0041 (4-130)||(52954-53080)
[»] scaffold0069 (1 HSPs)
scaffold0069 (4-173)||(17824-17997)
[»] scaffold0002 (1 HSPs)
scaffold0002 (4-173)||(480469-480642)
[»] scaffold2142 (1 HSPs)
scaffold2142 (4-173)||(504-677)
[»] scaffold0769 (1 HSPs)
scaffold0769 (126-172)||(1260-1306)
[»] scaffold0012 (1 HSPs)
scaffold0012 (126-162)||(194021-194057)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 43143593 - 43143769
Alignment:
Q  1 ccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgactttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43143593 ccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggctttt 43143692  T
Q  101 gggttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  43143693 gggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgccca 43143769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 42333787 - 42333957
Alignment:
Q  3 atcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42333787 atcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgg 42333886  T
Q  103 gttgagtctaatgtgcaaaaattatc----gagcccgggcgaccgcccggggtcgccggacggtgaaaccg 169  Q
    ||||||||||||||||||||||||||    |||||||| |||||||||||| |||| ||||||||||||||    
T  42333887 gttgagtctaatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgctggacggtgaaaccg 42333957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 3292908 - 3293080
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3292908 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 3293007  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| |||||||| |||||||||    ||||||||||||||||||||||||||| | || ||||||||||||||    
T  3293008 ttgggtctaatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtcactgggcggtgaaaccgccc 3293080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 6690247 - 6690419
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  6690247 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagtttgcccaaatttttctttttgtaagtgtgttaattggcttttggg 6690346  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| |||||||| |||||||||    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  6690347 ttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 6690419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 30216754 - 30216926
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  30216754 tcaatagtgtgctaaataaaattccgagatctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattagcttttggg 30216853  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  30216854 ttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaatccgccc 30216926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 10 - 172
Target Start/End: Original strand, 10352902 - 10353068
Alignment:
Q  10 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagt 109  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||    
T  10352902 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgggt 10353001  T
Q  110 ctaatgtgcaaaaattatc----gagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||||||||    
T  10353002 ctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccggacggtgaaaccgccc 10353068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 50205089 - 50205261
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  50205089 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgtccaattttttctttttgtaagtgtgttaattggcttttggg 50205188  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||  |||||||||||||||||    ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  50205189 ttggatctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccggacggtgaaaccgccc 50205261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 20129465 - 20129292
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||| |||||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  20129465 tcaatagtgtgccaaataaaattctaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 20129366  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||||||||   |||||| |||||||||    
T  20129365 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccca 20129292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 25930863 - 25930690
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||    
T  25930863 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 25930764  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||| |||||||||||||||    ||||||||||||||||||||| ||||||||  |||||  |||||||||    
T  25930763 ttgagtttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgccatacggtagaaccgccca 25930690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 48989483 - 48989311
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  48989483 tcaatagtgtgctaaataaaattccgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatggacttttgag 48989384  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| || ||||||||||||||||    |||| |||||  |||||||||| |||| ||| ||||||||| ||||    
T  48989383 ttgggtttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcgtcgggcggtgaaactgccc 48989311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 28877259 - 28877434
Alignment:
Q  1 ccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgactttt 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||  |||||    
T  28877259 ccatcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagatttcccaaatttttctttttataagcgtgttaattagctttt 28877358  T
Q  101 gggttgagtctaatgtgcaaaaattatcg----agcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
     |||||| |||||||||||||||||||||    |||||  |||||||| |||||||  ||||||||||||||||||    
T  28877359 aggttgaatctaatgtgcaaaaattatcgatctagcccaagcgaccgcacggggtcatcggacggtgaaaccgccc 28877434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 44156806 - 44156681
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||    
T  44156806 tcaatagtgtgctaaataaaattccgagacctatttgcgtgagagaattttcagattgtccaaaattttctttttgtaagtgtgttaattggcttttggg 44156707  T
Q  104 ttgagtctaatgtgcaaaaattatcg 129  Q
    ||| ||||||||||||||||||||||    
T  44156706 ttgggtctaatgtgcaaaaattatcg 44156681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 155
Target Start/End: Original strand, 36382358 - 36382512
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||| ||||||| ||    
T  36382358 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgtccaaatttttc-ttttgtaaatgtgttaatggactttttgg 36382456  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgcc 155  Q
    |||||| |||||||||||||||    ||||||||||||||||||||||||||||||    
T  36382457 ttgagtttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgcc 36382512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 26439291 - 26439464
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||  |||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||| | ||||||||    
T  26439291 tcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttggg 26439390  T
Q  104 ttgagtctaatgtgcaaaaattat----cgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||   |||||| |||||||||    
T  26439391 ttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgccca 26439464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 34407296 - 34407469
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||  |||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||| | ||||||||    
T  34407296 tcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttggg 34407395  T
Q  104 ttgagtctaatgtgcaaaaattat----cgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||   |||||| |||||||||    
T  34407396 ttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgccca 34407469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 35546111 - 35545982
Alignment:
Q  1 ccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgactttt 100  Q
    |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  35546111 ccatcaatagtgtgctaaataaaattcagagacccatttgcgtgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggctttt 35546012  T
Q  101 gggttgagtctaatgtgcaaaaattatcga 130  Q
    |||||| |||| ||| ||||||||| ||||    
T  35546011 gggttgggtctgatgcgcaaaaattgtcga 35545982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 29995995 - 29996167
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||| ||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||    
T  29995995 tcaatagtgtgcttaataaaattccgagaactatttgcgtgcaagaattttcagattgcccaaatttttcttttcgtaaatgtgttaatggactttttgg 29996094  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||||||||||||| ||||||||    |||||| |||| |||||| ||||| ||| ||| ||||||||||||||    
T  29996095 ttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgtccgggatcgtcgggcggtgaaaccgccc 29996167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 13012343 - 13012170
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||||||||   ||||| ||    
T  13012343 tcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttgg 13012244  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||| ||||||||||||||||||    ||||||||||||||||||||||||||||   |||||| |||||||||    
T  13012243 ttgaatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccca 13012170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 43356059 - 43355886
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||  |||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||| | ||||||||    
T  43356059 tcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttggg 43355960  T
Q  104 ttgagtctaatgtgcaaaaattat----cgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||||||||||||||    |||||||||||||| ||| ||||||||   |||||| |||||||||    
T  43355959 ttgagtctaatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgctacacggtggaaccgccca 43355886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 47500928 - 47500755
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||  ||| |||||||||   ||||| ||    
T  47500928 tcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttcataaatgtgttaatgagctttttgg 47500829  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||||||||   |||||| |||||||||    
T  47500828 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccca 47500755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 26448206 - 26448036
Alignment:
Q  5 caattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggt 104  Q
    |||| ||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  26448206 caatagtgtgctaaataaaattccgaaacctatttgtgtatgagaattttcagattgcccaaattttt-tttttgtaagtgtgttaatggacttttgggt 26448108  T
Q  105 tgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |   | |||||||||||||||    |||||| |||| ||| ||| ||| |||||||| ||||||||||||||    
T  26448107 tagatttaatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgccgggcggtgaaaccgccc 26448036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 29319717 - 29319843
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||| |||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||| |  |||||||    
T  29319717 tcaatagtgtgctaaataaaattccaagacttatttgtgtgtgacaattttcagattgctcaaatttttctttttgtaaatgtgttaatgggattttggg 29319816  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    |||||||||||||||||||||||||||    
T  29319817 ttgagtctaatgtgcaaaaattatcga 29319843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 17511252 - 17511372
Alignment:
Q  11 tgtgctaaataaaatt-ccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagt 109  Q
    |||||||||||||||| || |||||||||||||||| | |||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  17511252 tgtgctaaataaaatttccaagacctatttgcgtgtaacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 17511351  T
Q  110 ctaatgtgcaaaaattatcga 130  Q
    |||||||||||||||||||||    
T  17511352 ctaatgtgcaaaaattatcga 17511372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 172
Target Start/End: Original strand, 30077649 - 30077814
Alignment:
Q  10 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagt 109  Q
    ||||||||||||||||| | ||||||||||| |||| | ||||||||||||| |||||||||||||||||||| |||||||||  |||||| ||||| ||    
T  30077649 gtgtgctaaataaaatttcaagacctatttgtgtgtaaaaattttcagattgtccaaatttttctttttgtaaatgtgttaatgaactttttggttgggt 30077748  T
Q  110 ctaatgtgcaaaaattatc----gagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||||||||||||| |||||    ||||| ||||||||||||| ||||| ||| ||||||||||||||    
T  30077749 ctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcg-cgggcggtgaaaccgccc 30077814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 6235675 - 6235575
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  6235675 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatggacttttggg 6235576  T
Q  104 t 104  Q
    |    
T  6235575 t 6235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 1817871 - 1817752
Alignment:
Q  5 caattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggt 104  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| ||| ||||| ||||||||| |    
T  1817871 caatagtgtgttaaataaaattccgagacctatttgcgtgtaagaatttttagattgcccaaatttttctttttataaatgtattaatggacttttggat 1817772  T
Q  105 tgagtctaatgtgcaaaaat 124  Q
    ||  ||||||||||||||||    
T  1817771 tggatctaatgtgcaaaaat 1817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 40529170 - 40529044
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||| |||||||| |||| |||||||||||||||||||| |||||||||    |||| ||    
T  40529170 tcaatagtgtgctaaataaaattccaagacctatttgcatgtgacaattttcaaattgtccaaatttttctttttgtaaatgtgttaatgagtttttagg 40529071  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    |||||| ||||||||||||||||||||    
T  40529070 ttgagtttaatgtgcaaaaattatcga 40529044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 13392893 - 13392970
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgta 81  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13392893 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13392970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 13396032 - 13396109
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgta 81  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13396032 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13396109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 30110084 - 30109945
Alignment:
Q  33 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaatta---- 126  Q
    ||||||||||||||||| |||||| |||  | |||||||||||||||||||||||||||||| | |||| || ||| |||||||||||||||||||        
T  30110084 cctatttgcgtgtgagatttttcatattttgtccaaatttttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcga 30109985  T
Q  127 tcgagcccgggcgaccgcccggggtcgccggacggtgaaa 166  Q
    ||||| ||||||||||| ||||||||| ||| ||||||||    
T  30109984 tcgagtccgggcgaccgtccggggtcgtcgggcggtgaaa 30109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 48130087 - 48129995
Alignment:
Q  33 cctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcga 130  Q
    ||||||||||||||||| ||||||     |||||||||||||||||||||||||||||||   ||||||||||| ||||||| |||||||||||||||    
T  48130087 cctatttgcgtgtgagagttttca-----cccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcga 48129995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 45194276 - 45194159
Alignment:
Q  59 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgc 154  Q
    ||||||||  |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||    |||||| |||||| | |||| |||||||     
T  45194276 ttgcccaatattttttttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcgt 45194177  T
Q  155 cggacggtgaaaccgccc 172  Q
    ||| ||||||||| ||||    
T  45194176 cgggcggtgaaactgccc 45194159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 6254637 - 6254573
Alignment:
Q  66 aatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcga 130  Q
    ||||||| |||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  6254637 aatttttttttttgcaagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcga 6254573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 27363446 - 27363344
Alignment:
Q  74 tttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaa--tt--atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 169  Q
    ||||||||||||||||||| | ||||||||||| | ||||| ||||||||  ||  |||||||||||||||||||||| |||||||  ||||| ||||||    
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccg 27363347  T
Q  170 ccc 172  Q
    |||    
T  27363346 ccc 27363344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 7769357 - 7769310
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  7769357 atcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgccca 7769310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 49908790 - 49908836
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  49908790 atcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 49908836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 5517502 - 5517548
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||    
T  5517502 atcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgccc 5517548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 6212036 - 6212082
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  6212036 atcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgccc 6212082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 17555025 - 17554979
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||    
T  17555025 atcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgccc 17554979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 50720487 - 50720529
Alignment:
Q  129 gagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 171  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  50720487 gagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcc 50720529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 13393011 - 13393054
Alignment:
Q  129 gagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||||||||||||||| |||||||||| || ||||||||||||||    
T  13393011 gagcccgggcgaccgtccggggtcgctgggcggtgaaaccgccc 13393054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 13396150 - 13396193
Alignment:
Q  129 gagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||||||||||||||| |||||||||| || ||||||||||||||    
T  13396150 gagcccgggcgaccgtccggggtcgctgggcggtgaaaccgccc 13396193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 34136834 - 34137010
Alignment:
Q  1 ccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgactttt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34136834 ccatcaattgtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgactttt 34136933  T
Q  101 gggttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||||||||||||    ||||||||||||||||||| |||||||||| |||||||||||| ||||    
T  34136934 gggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaaccaccca 34137010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 4404166 - 4403994
Alignment:
Q  1 ccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgactttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||    
T  4404166 ccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgtaagtatgttaattggctttt 4404067  T
Q  101 gggttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 169  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||| ||||||||||| | |||||||||    
T  4404066 gggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgccggccagtgaaaccg 4403994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 23402263 - 23402091
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23402263 tcaatagtgtgttaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 23402164  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| ||||||| |||||| |||    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  23402163 ttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 23402091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 16788037 - 16788194
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16788037 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagagttttaagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 16788136  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccgg 157  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||| |||||    
T  16788137 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggttgccgg 16788194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 9877374 - 9877251
Alignment:
Q  5 caattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggt 104  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9877374 caatagtgtgctaaataaaatttcgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggt 9877275  T
Q  105 tgagtctaatgtgcaaaaattatc 128  Q
    |  |||||||||||||||||||||    
T  9877274 taggtctaatgtgcaaaaattatc 9877251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 15838440 - 15838286
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||    
T  15838440 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgaaaattttcagattgcccaaatttttc-ttttgtaaatgtgttaatggactttttgg 15838342  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgcc 155  Q
    |||||| |||||||||||||||    |||||||||||| |||||||||||||||||    
T  15838341 ttgagtttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgcc 15838286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 36408705 - 36408538
Alignment:
Q  5 caattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggt 104  Q
    |||| ||||| |||||||||||| |||||||||| |||||| |||||||||| |||||| ||| |||||||||||||| ||||||||| |||||||||||    
T  36408705 caatagtgtgttaaataaaattctgagacctattagcgtgtaagaattttcaaattgccaaaaattttctttttgtaaatgtgttaatggacttttgggt 36408606  T
Q  105 tgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaacc 168  Q
    ||  ||||||||||||||||||    ||||||||||||||||||||| ||||||||| ||||||||||    
T  36408605 tggatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgccgggcggtgaaacc 36408538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 29728398 - 29728570
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||  |||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||   ||||||||    
T  29728398 tcaatagtgtgctaaataaaattcgaagacctatttgcgtgtcacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttggg 29728497  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||||||||||||||||||| ||    ||||||| |||||||||| |||||||||||  |||||  ||||||||    
T  29728498 ttgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgccatacggtagaaccgccc 29728570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 3648806 - 3648932
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| | ||||| |||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| | ||||||||    
T  3648806 tcaatagtgtgctaaataaaattccaaaacctacttgcgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaatgggcttttggg 3648905  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    |||||||||||||| ||||||||||||    
T  3648906 ttgagtctaatgtgaaaaaattatcga 3648932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 2729205 - 2729380
Alignment:
Q  1 ccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgactttt 100  Q
    |||||||| |||||||||||||||||  ||||||||||||||| ||||| |||||| |||||| |||  ||||||||| ||||||||||||| | |||||    
T  2729205 ccatcaatagtgtgctaaataaaattttgagacctatttgcgtatgagagttttcaaattgccaaaaaatttctttttataagtgtgttaatgggctttt 2729304  T
Q  101 gggttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    || |||  | ||||||| |||||||    |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  2729305 ggattggatttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaaaccgccc 2729380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 39914669 - 39914516
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||| |||||||||||| |||||||||| | ||||| |||||||| ||||||||||||||| ||||| ||| |||||||||   ||||| ||    
T  39914669 tcaatagtgtgccaaataaaattccaagacctatttacttgtgacaattttcaaattgcccaaattttt-tttttataaatgtgttaatgagctttttgg 39914571  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgc 154  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  39914570 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 39914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 42231092 - 42230971
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||||||||  |||||||| |||||||| |    
T  42231092 tcaatagtgtgctaaataaaattctgagacctatttgcatatgagaattttcaaattgcccaaatttttctttttgtaa--gtgttaatggacttttgag 42230995  T
Q  104 ttgagtctaatgtgcaaaaattat 127  Q
    |||  | |||||||||||||||||    
T  42230994 ttggatttaatgtgcaaaaattat 42230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 3435397 - 3435298
Alignment:
Q  33 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcga 130  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||    
T  3435397 cctatttgcgtttgagaattttcagattttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcga 3435298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 40470567 - 40470631
Alignment:
Q  66 aatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcga 130  Q
    ||||||| ||||| ||||||||||||| ||||||||  ||| |||||||||||||||||||||||    
T  40470567 aatttttttttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcga 40470631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 10397122 - 10397220
Alignment:
Q  74 tttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatc----gagcccgggcgaccgcccggggtcgccggacggtgaaacc 168  Q
    ||||| ||| ||||||||| | ||||||||||||  |||||||| | ||||||||    ||||||||||||  |||||| |||||||| ||||| ||||    
T  10397122 tttttttaactgtgttaatcggcttttgggttgaacctaatgtgaagaaattatcgattgagcccgggcgagtgcccggagtcgccgggcggtgtaacc 10397220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 376519 - 376459
Alignment:
Q  25 ttccgagacctatttgcgtgtgagaattttcagattgccca-aatttttctttttgtaagt 84  Q
    ||||||||||| |||||||||||||||||||| ||| | || ||||||| ||||| |||||    
T  376519 ttccgagacctctttgcgtgtgagaattttcatatttcgcacaatttttttttttttaagt 376459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 11018224 - 11018397
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11018224 tcaattgtgtgctaaataaaattctgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 11018323  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||||||||||||    |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  11018324 ttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgccca 11018397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 45183136 - 45182964
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45183136 tcaatagtgtgctaaataaaattccgagacctatttgtgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 45183037  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| |||||||| ||||||||||    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  45183036 ttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 6503578 - 6503754
Alignment:
Q  1 ccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgactttt 100  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| |||||| |||||    
T  6503578 ccatcaattgtgtgctaaataaaaatccgagacctatttgcctgtgagaattttcagattgcttaaatttttctttttgtaagtgtgctaattggctttt 6503677  T
Q  101 gggttgagtctaatgtgcaaaaat----tatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||| |||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6503678 gggttgagtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 6503754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 6930906 - 6931078
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  6930906 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcctaaatttttctttttgtaaatgtgttaattggcttttggg 6931005  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||  ||||||| |||||||||    |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  6931006 ttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 6931078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 33041108 - 33040936
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||||  ||||||||    
T  33041108 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcaaattgttcaaatttttctttttgtaagtgtgttaattagcttttggg 33041009  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| ||||||| ||||||||||    |||||||||| ||||||||||||||||||||| ||||||||||||||    
T  33041008 ttgggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccgggcggtgaaaccgccc 33040936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 172
Target Start/End: Original strand, 19565519 - 19565685
Alignment:
Q  10 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagt 109  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| || |||| ||||| ||    
T  19565519 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgtaaatgtgttaatggattttttggttgggt 19565618  T
Q  110 ctaatgtgcaaaaattatcgag----cccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||||||||||||||||     |||||||||||||||||| ||||||| ||||||||||||||    
T  19565619 ctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgccgggcggtgaaaccgccc 19565685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 19390301 - 19390146
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||    
T  19390301 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatagacttttagg 19390202  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgcc 155  Q
    |||||||||||||||||||||||    |||| ||||| ||||||||||||||||||    
T  19390201 ttgagtctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgcc 19390146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 34084131 - 34084289
Alignment:
Q  1 ccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgactttt 100  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||    
T  34084131 ccatcaatagtgtgctaaataaaattccaagacctatttgcgtgtgataattttcatattgcccaaatttttctttttgtaaatgtgttaatggactttt 34084230  T
Q  101 gggttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgcc 155  Q
     |||||| | |||||||||||||||    |||||| |||||||||||||||||||||||    
T  34084231 tggttgaatttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgcc 34084289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 10 - 172
Target Start/End: Complemental strand, 45336023 - 45335858
Alignment:
Q  10 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagt 109  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||| ||    
T  45336023 gtgtgctaaataaaattccaagacctatttgcgtgtaagaattttcagattgcccagatttttctttttgtaaatgtgttaa-tgactttttggttgggt 45335925  T
Q  110 ctaatgtgcaaaaattatc----gagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||| ||||||||||    ||| ||||||||||||||| ||||||||| ||||||||||||||    
T  45335924 ctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgccgggcggtgaaaccgccc 45335858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 6269438 - 6269564
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  6269438 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 6269537  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    |||||||||||||||||||||||||||    
T  6269538 ttgagtctaatgtgcaaaaattatcga 6269564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 27935333 - 27935160
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  27935333 tcaatagtatgctaaataaaattccgagacctattttcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgagcttttggg 27935234  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||| || ||||||||||||||||    ||||||||||||||| |||| |||| ||| | |||||||||| ||||    
T  27935233 ttgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccagggttgccaggcggtgaaaccaccca 27935160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 39771945 - 39771772
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||  |||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||| | ||||||||    
T  39771945 tcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttggg 39771846  T
Q  104 ttgagtctaatgtgcaaaaattat----cgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||   |||||| |||||||||    
T  39771845 ttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgccca 39771772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 22968456 - 22968610
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||| | |||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  22968456 tcaatagtgtgctaaataaaatttcaagacctatttacgtgtgacaatttttagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 22968555  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgc 154  Q
    || |||||||||||||||||||    ||||||||||| |||||||||||||||||    
T  22968556 ttaagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgc 22968610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 35514417 - 35514249
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||| |||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||    |||||||||| ||||||||||    
T  35514417 tcaatagtgtgcaaaataaaattcctagacctatttgcgagtgagaattttcatattgtccaaatttttcttttt----gtgtgttaatggacttttggg 35514322  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||  |||| | ||| ||||||    ||||||||||| |||||| ||||||||||||| ||||||||| ||||    
T  35514321 ttggatctagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgccgggcggtgaaactgccc 35514249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 40081753 - 40081877
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||| ||||| || ||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| |||  ||| ||    
T  40081753 tcaatagtgtgctaaaaaaaat-ccaagatctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaa-tgagcttttgg 40081850  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    ||||||||||||| |||||||||||||    
T  40081851 ttgagtctaatgttcaaaaattatcga 40081877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 5135397 - 5135298
Alignment:
Q  33 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcga 130  Q
    |||||||| |||||||||||||| ||||  | ||||||||||||||||||||||||||||||   ||||| ||||| ||||||||| ||||||| |||||    
T  5135397 cctatttgtgtgtgagaattttcggattttgtccaaatttttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcga 5135298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 5354738 - 5354692
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  5354738 atcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgccc 5354692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 6891027 - 6890981
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  6891027 atcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgccc 6890981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 22922214 - 22922141
Alignment:
Q  102 ggttgagtctaatgtgcaaaaat----tatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 171  Q
    |||||||| ||||||||||||||     |||||||||| ||||||||||||| |||||  |||||| |||||||    
T  22922214 ggttgagtttaatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgccatacggtggaaccgcc 22922141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 28996885 - 28996713
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28996885 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttagg 28996786  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| |||||||| ||||||||||    |||||| |||||||||||||||||||||||| ||||||||||||||    
T  28996785 ttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccgggcggtgaaaccgccc 28996713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 18339261 - 18339106
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |     
T  18339261 tcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttaga 18339162  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgcc 155  Q
    ||| ||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  18339161 ttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 172
Target Start/End: Complemental strand, 29743432 - 29743266
Alignment:
Q  10 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagt 109  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||  |||||| ||||| ||    
T  29743432 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttctttctgtaaatgtgttaatgaactttttggttgggt 29743333  T
Q  110 ctaatgtgcaaaaattatc----gagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||||||||||||||    |||||||||| |||||||||| ||| ||||||||||||||||||    
T  29743332 ctaatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcgtcggacggtgaaaccgccc 29743266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 34948770 - 34948943
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||| | ||| ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  34948770 tcaatagtgtgctaaataaaatttcaagatctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 34948869  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||||||||||||    |||||||| ||||||||||| |||||||||  |||||  |||||||||    
T  34948870 ttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccatacggtagaaccgccca 34948943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 398772 - 398599
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||||||||   ||||| ||    
T  398772 tcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttgg 398673  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||||||||   |||||| |||||||||    
T  398672 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccca 398599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 13837976 - 13837803
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||   ||||||||    
T  13837976 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttgatgtgcttttggg 13837877  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||| |||||||||    |||| |||| |||| ||||||||||||||  |||||  |||||||||    
T  13837876 ttgagtctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgccatacggtagaaccgccca 13837803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 33229349 - 33229474
Alignment:
Q  5 caattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggt 104  Q
    |||| |||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  33229349 caatagtgtgctaaataaaatcccgagacttatttacgtgtaagaattttcagattgcccaaatttttctttttggaaatgtgttaatggacttttgggt 33229448  T
Q  105 tgagtctaatgtgcaaaaattatcga 130  Q
    || ||||||||| ||||||| |||||    
T  33229449 tgggtctaatgtacaaaaatgatcga 33229474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 24697899 - 24698000
Alignment:
Q  74 tttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatc----gagcccgggcgaccgcccggggtcgccggacggtgaaaccg 169  Q
    ||||||||||||||||||| | ||||||||||| | |||||||| ||||||||||    ||||||||||||  | ||||||||||||| |||||||||||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccg 24697998  T
Q  170 cc 171  Q
    ||    
T  24697999 cc 24698000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 31028435 - 31028545
Alignment:
Q  63 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccgga 158  Q
    ||||| ||| |||||||||| |||||||||   ||||| |||||  |||||||||||||||||    |||||| |||||| ||||| ||||||||||||     
T  31028435 ccaaaatttcctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgccggg 31028534  T
Q  159 cggtgaaaccg 169  Q
    |||||||||||    
T  31028535 cggtgaaaccg 31028545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 13647046 - 13647000
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||    
T  13647046 atcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgccc 13647000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 34385526 - 34385572
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||| |||| |||||||||||||||||| ||||||||||||||    
T  34385526 atcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgccc 34385572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 24695572 - 24695516
Alignment:
Q  74 tttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcga 130  Q
    ||||||||||||||||||| | ||||||||||||| |||||||  |||||| |||||    
T  24695572 tttttgtaagtgtgttaatgggcttttgggttgagcctaatgttaaaaaatgatcga 24695516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 2753376 - 2753336
Alignment:
Q  129 gagcccgggcgaccgcccggggtcgccggacggtgaaaccg 169  Q
    |||| ||||||||||||  ||||||||||||||||||||||    
T  2753376 gagctcgggcgaccgcctagggtcgccggacggtgaaaccg 2753336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 34389075 - 34389241
Alignment:
Q  11 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||    
T  34389075 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattagcttttgggttgggtc 34389174  T
Q  111 taatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||    |||||||||||||||||||||||||||||||| |||||||| ||||||    
T  34389175 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaatcgccca 34389241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 37002156 - 37002328
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37002156 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgga 37002255  T
Q  104 ttgagtctaatgtgcaaaaattatcgagc----ccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| ||||||||||||||||||||||| |    |||  |||||||||||||||||||| ||||||||||||||    
T  37002256 ttgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccgggcggtgaaaccgccc 37002328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 26624901 - 26624728
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  26624901 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattaacttttgga 26624802  T
Q  104 ttgagtctaatgtgcaaaaatta-----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| ||||||| |||||||||||     |||||||| |||||||||||||||| ||||| ||||||||||||||    
T  26624801 ttgggtctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggttgccgggcggtgaaaccgccc 26624728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 35090323 - 35090177
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  35090323 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaatttttctttttgtaagtgtgttaattggcttttggg 35090224  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgccc 146  Q
    ||| ||||||||||||||||||    |||||||||||||||||||||    
T  35090223 ttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 38638248 - 38638372
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38638248 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 38638347  T
Q  104 ttgagtctaatgtgcaaaaattatc 128  Q
    |||  ||||||||||||||||||||    
T  38638348 ttggatctaatgtgcaaaaattatc 38638372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 8867743 - 8867915
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||| |||||||     
T  8867743 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttccgattgcccaaatttttctttttgtaaatgtattaattggcttttgga 8867842  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| ||||||| ||||||||||    |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  8867843 ttgggtctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgccc 8867915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 5555642 - 5555469
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| || |||||| | ||||||||    
T  5555642 tcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgcgttaatgggcttttggg 5555543  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||  |||||  |||||||||    
T  5555542 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgccca 5555469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 43184480 - 43184652
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  43184480 tcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttggg 43184579  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    || ||||| ||| | |||||||    |||||||||| ||||||||||||  ||||||| ||||||||||||||    
T  43184580 ttaagtctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccggaatcgccgggcggtgaaaccgccc 43184652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 3114108 - 3114281
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  3114108 tcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 3114207  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||||||||||||    |||||||||||||||||| |||||||| ||  |||||  |||||||||    
T  3114208 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcaccatacggtagaaccgccca 3114281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 33685719 - 33685547
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  33685719 tcaatagtgtgctaaataaaattatgagacatatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggcttttggg 33685620  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| || ||||||||||||||||    ||||||||| ||||| ||| ||||||||||| ||||||||||||||    
T  33685619 ttgggtttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccgggcggtgaaaccgccc 33685547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 8394280 - 8394125
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||    
T  8394280 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttgg 8394181  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgcc 155  Q
    |||||| ||||||||||||||||    |||||||||||||||||||||||||||||    
T  8394180 ttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8394125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 36630971 - 36630816
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||    
T  36630971 tcaatagtgtgctaactaaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 36630872  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgcc 155  Q
    |||||| ||||||||||||||||    ||||||||||||||||| |||||||||||    
T  36630871 ttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcc 36630816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 14777119 - 14777273
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||   ||||||||    
T  14777119 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttggg 14777218  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgc 154  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||| ||||    
T  14777219 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 14777273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 7002880 - 7002708
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||| ||||||||    
T  7002880 tcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaattggcttttggg 7002781  T
Q  104 ttgagtctaatgtgcaaaaat----tatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| || ||||||  ||||||     ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  7002780 ttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7002708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 7048751 - 7048579
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||| ||||||||    
T  7048751 tcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaattggcttttggg 7048652  T
Q  104 ttgagtctaatgtgcaaaaat----tatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| || ||||||  ||||||     ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  7048651 ttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7048579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 40920015 - 40920141
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  40920015 tcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaattggcttttggg 40920114  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    || | ||||||||||||||||||||||    
T  40920115 ttaaatctaatgtgcaaaaattatcga 40920141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 36658336 - 36658210
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||| ||    
T  36658336 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttatttttgttagtatgttaattggcttttcgg 36658237  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    ||| ||| |||||||||||||||||||    
T  36658236 ttgggtccaatgtgcaaaaattatcga 36658210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 10868514 - 10868575
Alignment:
Q  33 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtgtgttaat 92  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||||| |||||||||    
T  10868514 cctatttgcgcgtgagaattttcagattttgcccaaatttttctttttgtaaatgtgttaat 10868575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 37254789 - 37254623
Alignment:
Q  11 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37254789 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtc 37254690  T
Q  111 taatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||||||    ||||||| ||||||||||| ||||||||||  |||||||||||||||    
T  37254689 taatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaaaccgccca 37254623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 12278872 - 12279044
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  12278872 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcctttggg 12278971  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| ||||||||||||||||||    |||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  12278972 ttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgccgggcggtgaaaccgccc 12279044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 17332563 - 17332735
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17332563 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 17332662  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| ||||||| ||||||||||    ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  17332663 ttgggtctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgccgggcggtgaaaccgccc 17332735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 31680522 - 31680350
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31680522 tcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 31680423  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| |||||||| | ||||||||    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  31680422 ttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31680350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 31501726 - 31501900
Alignment:
Q  2 catcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttg 101  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31501726 catcaatagtgtgctaaataaaatttcgagacctatttgcgtgcgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttg 31501825  T
Q  102 ggttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||||| ||||||||||||||||||    ||||||||||||| | |||||||||||||||| ||||||||||||||    
T  31501826 ggttgggtctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgccgggcggtgaaaccgccc 31501900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 33430476 - 33430350
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33430476 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 33430377  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    ||| |||||||| ||||||||||||||    
T  33430376 ttgggtctaatgcgcaaaaattatcga 33430350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 10034082 - 10033910
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  10034082 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 10033983  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||||||||||||||||||    |||||||||||||| || |||||||||||  |||||  ||||||||    
T  10033982 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtagaaccgccc 10033910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 13818132 - 13817960
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  13818132 tcaatagtgtgctaaataaatttccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 13818033  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||||||||||||||||||    ||||||||| |||||||||||||||||||  |||||  ||||||||    
T  13818032 ttgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgccatacggtagaaccgccc 13817960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 16333888 - 16334013
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  16333888 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 16333987  T
Q  104 ttgagtctaatgtgcaaaaattatcg 129  Q
    |||| |||||||||||||||||||||    
T  16333988 ttgaatctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 26283330 - 26283503
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||||  |||||| ||    
T  26283330 tcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgaactttttgg 26283429  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||||||||||||    |||||||||||||||||||||| ||||||   |||||| |||||||||    
T  26283430 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgctacacggtggaaccgccca 26283503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 39657518 - 39657642
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||   ||||||||    
T  39657518 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttggg 39657617  T
Q  104 ttgagtctaatgtgcaaaaattatc 128  Q
    |||||||||||||||||||||||||    
T  39657618 ttgagtctaatgtgcaaaaattatc 39657642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 1776394 - 1776541
Alignment:
Q  10 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagt 109  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| ||||||| |||||| |    
T  1776394 gtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgact 1776493  T
Q  110 ctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcg 153  Q
     |||||| ||||||||    ||||||||||||||||||||||||||||    
T  1776494 ttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcg 1776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 16155152 - 16155026
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||||||| | ||||||||    
T  16155152 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcctaaatttttctttttataaatgtgttaatgggcttttggg 16155053  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    |||||||||||||||||||||||||||    
T  16155052 ttgagtctaatgtgcaaaaattatcga 16155026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 173
Target Start/End: Original strand, 36293639 - 36293806
Alignment:
Q  10 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagt 109  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  36293639 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 36293738  T
Q  110 ctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||| ||||||||    |||||| |||| ||||||| ||||||||||  |||||  |||||||||    
T  36293739 ctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgccacacggtagaaccgccca 36293806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 39434851 - 39434678
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||  |||||||||| | ||||| ||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||    
T  39434851 tcaatagtgtgctaaataaaattcaaagacctatttacatgtgacaattttcagattgcccaaatttttcattttgtaaatgtgttaatgggcttttggg 39434752  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||| ||||||||    |||||||||||||||||||| ||||||||  |||||  |||||||||    
T  39434751 ttgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgccacacggtagaaccgccca 39434678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 3155649 - 3155798
Alignment:
Q  10 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagt 109  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||| ||||||| ||||||||    
T  3155649 gtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatggacttttaggttgagt 3155748  T
Q  110 ctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgcc 155  Q
    | ||||||||||||||    |||||||||| ||||||||||||| |||||    
T  3155749 cgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgcc 3155798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 43069031 - 43068909
Alignment:
Q  5 caattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggt 104  Q
    |||| |||||||||||||||||||||||| ||||| | ||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  43069031 caatagtgtgctaaataaaattccgagacttatttacatgtaagaattttcagattgcccaaatttttctttttgtaaatgtgttaatggacttttgggt 43068932  T
Q  105 tgagtctaatgtgcaaaaattat 127  Q
    || |||||||||| |||||||||    
T  43068931 tgggtctaatgtgaaaaaattat 43068909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 19986094 - 19985968
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||| ||||||||||| | |||||||||||||||||| |||||| ||||| ||||||||||||||||||||| |||| |||| ||||||||||    
T  19986094 tcaatagtgtgttaaataaaatttcaagacctatttgcgtgtgataatttttagattacccaaatttttctttttgtaaatgtgctaatggacttttggg 19985995  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    |||| ||||||||||||||||||||||    
T  19985994 ttgaatctaatgtgcaaaaattatcga 19985968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 36291526 - 36291354
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||| |||||||||||| |||||||||||| |||| | |||||| ||||||||||||||||||||||||||| |||||||||  |||||| ||    
T  36291526 tcaatagtgtgttaaataaaattctgagacctatttgtgtgtaataattttgagattgcccaaatttttctttttgtaaatgtgttaatgaacttttagg 36291427  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||   |||||||||||||||||    ||||| ||||| ||||||||||| |||| ||| ||||||||||||||    
T  36291426 ttagatctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcggcgggcggtgaaaccgccc 36291354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 28801415 - 28801316
Alignment:
Q  33 cctatttgcgtgtgagaattttcagattg--cccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcga 130  Q
    |||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||| | ||||||| |||  ||||||||||||||||||||||    
T  28801415 cctatttgcgtgtgagaattttcatatttttcccaaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcga 28801316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 26543903 - 26543949
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||    
T  26543903 atcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 26543949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 45418738 - 45418566
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45418738 tcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 45418639  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||  ||||||| ||||||||||    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  45418638 ttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45418566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 8147507 - 8147334
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaatttt-cagattgcccaaatttttctttttgtaagtgtgttaattgacttttgg 102  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  8147507 tcaatagtgtgttaaataaaattccgagatctatttgcgtgtgagaatttttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttga 8147408  T
Q  103 gttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||| |||||||||||||| |||    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  8147407 gttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 8147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 44084615 - 44084787
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||     
T  44084615 tcaatagtgtgctaaataaaattctgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgaacttttgga 44084714  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| || |||||||||||||||    |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  44084715 ttgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccgggcggtgaaaccgccc 44084787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 8059345 - 8059517
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||    
T  8059345 tcaattgtgtgctaaataaaattccgagaccgatttgtgtgtgagaattttcaaattggccaaatttttctttttgtaagtgtgttaattggcttttggg 8059444  T
Q  104 ttgagtctaatgtgcaaaaattatc----gagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||| ||||||||||||||||||||    ||||| |||||| || ||||||||| ||| ||||||||||||||    
T  8059445 ttgactctaatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcgtcgggcggtgaaaccgccc 8059517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 42440141 - 42439961
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  42440141 tcaatagtgtgctaaataaaattgcaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 42440042  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccacgtatat 180  Q
    || ||||||||||||||||||||    |||||||||||||||||||||||||||||  |||||  ||||||||| ||||||    
T  42440041 tttagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatgtatat 42439961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 41251646 - 41251798
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  41251646 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 41251745  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtc 152  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  41251746 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 41251798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 771147 - 770977
Alignment:
Q  11 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtc 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||    
T  771147 tgtgctaaataaagttccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggctttttggttgggtc 771048  T
Q  111 taatgtgcaaaaatt----atcgagcccgggcgaccgcccgg-----ggtcgccggacggtgaaaccgccc 172  Q
    |||||||||||| ||    |||||||||||||||||||||||     ||||||||| ||||||||||||||    
T  771047 taatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatccggtcgccgggcggtgaaaccgccc 770977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 12756849 - 12756975
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  12756849 tcaatagtgtgctaaataaaattccgagacttatttgcgtgtgagaattttcagattgctcaaatttttctttttgtaagtgtgttaattggcttttggg 12756948  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    ||| |||||||| ||||||||||||||    
T  12756949 ttgggtctaatgcgcaaaaattatcga 12756975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 6403816 - 6403989
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||||  |||||| ||    
T  6403816 tcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgaactttttgg 6403915  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||   |||||| |||||||||    
T  6403916 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccca 6403989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 35962870 - 35962697
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||||||||   ||||||||    
T  35962870 tcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaataagcttttggg 35962771  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||||||||||    |||||||||| |||||||| |||||||||  |||||  |||||||||    
T  35962770 ttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgccatacggtagaaccgccca 35962697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 18981765 - 18981622
Alignment:
Q  10 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagt 109  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  18981765 gtgtgctaaataaaattccaagacctatttgcgtgtgacaatttttaaattgcccaaatttttctttttgtaaatgttttaatggacttttgggttgagt 18981666  T
Q  110 ctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggg 149  Q
    ||||||||||||||||    ||||||||||| ||||||||||||    
T  18981665 ctaatgtgcaaaaattatcaatcgagcccggacgaccgcccggg 18981622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 155
Target Start/End: Original strand, 31581634 - 31581789
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  31581634 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 31581733  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgcc 155  Q
     |||||||||| |||||||| ||    ||||||| ||||||||||||| |||||||    
T  31581734 atgagtctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgcc 31581789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 155
Target Start/End: Original strand, 32127153 - 32127308
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||   ||||||||    
T  32127153 tcaatagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgcctaaatttttctttttgtaaatgtgttaatgagcttttggg 32127252  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgcc 155  Q
    | |||| |||||||||||||||    ||||||||||||||||||||||||||||||    
T  32127253 tcgagtttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 32127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 17445053 - 17445224
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  17445053 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 17445152  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||  |||||||||||    ||||||| |||||||||||||| |||||||  |||||  |||||||||    
T  17445153 ttgagtcta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgccacacggtagaaccgccca 17445224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 16405755 - 16405603
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||| ||| |||||||||   ||||||||    
T  16405755 tcaatagtgtgctaaataaaattccaagacttatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatgagcttttggg 16405656  T
Q  104 ttgagtctaatgtgcaaaaattatc----gagcccgggcgaccgcccggggtc 152  Q
    |||||||||| ||||||||||||||    |||||||||||||||||| |||||    
T  16405655 ttgagtctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtc 16405603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 2958131 - 2958285
Alignment:
Q  22 aaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaa 121  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||    
T  2958131 aaattccaagacctatttgcgtgtgacaattttcagattacccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaa 2958230  T
Q  122 aat---tatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    | |    ||||||||||| ||||||||||||||||||  |||||  |||||||||    
T  2958231 attatcgatcgagcccggacgaccgcccggggtcgccatacggtagaaccgccca 2958285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 2286017 - 2285891
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||||||||| ||| |||| ||||||||| ||||||| ||    
T  2286017 tcaatagtgtgctaaataaaattccaaaacctatttgcgtgtgacaattttcagattgctcaaatttttcctttcgtaaatgtgttaatagactttttgg 2285918  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    |||  | ||||||||||||||||||||    
T  2285917 ttggatttaatgtgcaaaaattatcga 2285891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 26162721 - 26162837
Alignment:
Q  11 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtc 110  Q
    ||||||||||||   ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||| |  ||||||||||| |     
T  26162721 tgtgctaaataa---tccgagacctatttgtgtttgagaatttttagattgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgaatt 26162817  T
Q  111 taatgtgcaaaaattatcga 130  Q
    ||||||| ||||||||||||    
T  26162818 taatgtgtaaaaattatcga 26162837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 26238071 - 26237955
Alignment:
Q  45 tgagaattttcagatt-gcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaat---tatcgagcccgggcga 140  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||  |||||| |||||||||    |||||||||||||||    
T  26238071 tgagagttttcagatttgcccaaatttttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaatatcgatcgagcccgggcga 26237972  T
Q  141 ccgcccggggtcgccgg 157  Q
    |||||||||||||||||    
T  26237971 ccgcccggggtcgccgg 26237955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 4555250 - 4555349
Alignment:
Q  33 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcga 130  Q
    ||||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||||||    ||||||||||| || | ||||||||||||||||||    
T  4555250 cctatttacgtgtgagaattttcagattttgcccaaaattttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcga 4555349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 7072589 - 7072710
Alignment:
Q  33 cctatttgcgtgtgagaattttcaga--ttgcccaaatttttctttttgtaagtgtgt--taattgacttttgggttgagtctaatgtgcaaaaatt--- 125  Q
    ||||||| |||| |||||||||||||  ||| ||||  |||||||||| |||||||||  |||| | |||||||||||||| ||||||  |||||||       
T  7072589 cctatttacgtgcgagaattttcagaatttgtccaatattttctttttataagtgtgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatc 7072688  T
Q  126 -atcgagcccgggcgaccgccc 146  Q
     |||||||||||||||||||||    
T  7072689 gatcgagcccgggcgaccgccc 7072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 34523269 - 34523223
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||    
T  34523269 atcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 34523223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 35907700 - 35907534
Alignment:
Q  11 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  |||||| ||||||||||| |||    
T  35907700 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaaattttctttttgtaagtgtactaattggcttttgggttgggtc 35907601  T
Q  111 taatgtgcaaaaattatcg----agcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||||||    |||||||||||||||||| ||||||||| |||||||||||||||    
T  35907600 taatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgccca 35907534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 17445461 - 17445296
Alignment:
Q  11 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  17445461 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttggatc 17445362  T
Q  111 taatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||| ||||||||    ||| |||||||||||||||  ||||||||||| |  |||||||||||    
T  17445361 taatgtacaaaaattattgatccagcccgggcgaccgcatggggtcgccgggcaatgaaaccgccc 17445296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 7433600 - 7433427
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||| | ||||||||||| |||||| |||||| |||||||||||| |||||||||||||| ||||||||| | ||||||||    
T  7433600 tcaatagtgtgctaaataaaatttcaagacctatttgtgtgtgacaatttttagattgcccaaaattttctttttgtaaatgtgttaatgggcttttggg 7433501  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||||||||||||    ||||||| |||||||||||||||||| |||  |||||  |||||||||    
T  7433500 ttgagtctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgccatacggtagaaccgccca 7433427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 26144410 - 26144237
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||||||||   ||||| ||    
T  26144410 tcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttgg 26144311  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||||||||   |||||| |||||||||    
T  26144310 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccca 26144237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 3829138 - 3828967
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  3829138 tcaatagtgtgctaaataaaattcc-agacctatttgcgtatgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaatgaacttttggg 3829040  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| || ||||||||||||||||    |||| |||| ||||||| ||||||| |||||  | |||||||||||    
T  3829039 ttgggtttaatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggttgccgggtgatgaaaccgccc 3828967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 321396 - 321561
Alignment:
Q  11 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtc 110  Q
    |||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||  ||    
T  321396 tgtgttaaataaaattccgagacctatttgcatatgagaattttcagattgcccaaatttttctttttgtaactgtgttaatggacttttgggttggatc 321495  T
Q  111 taatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||  ||||||||    ||||||||||| ||||||||||   |||||||  |||||||||||||    
T  321496 taatgcacaaaaattatcgatcgagcccggacgaccgcccgaaatcgccgggtggtgaaaccgccc 321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 32982076 - 32982223
Alignment:
Q  12 gtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtct 111  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||| | ||||||| | ||||| ||||| ||||    
T  32982076 gtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgtccaaatttttctttttgtaaatatgttaatgggcttttaggttgggtct 32982175  T
Q  112 aatgtgcaaaaattatcga----gcccgggcgaccgcccggggtcgcc 155  Q
    |||||||||||||||||||    ||||| |||||||||||||||||||    
T  32982176 aatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgcc 32982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 42310964 - 42311125
Alignment:
Q  15 ctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaat 114  Q
    |||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||||    
T  42310964 ctaaataaaatttcaagacttatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaacgggcttttgggttgagtctaat 42311063  T
Q  115 gtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||||||    ||||||||||||||| || | |||||||||  |||||  ||||||||    
T  42311064 gtgcaaaaattatcgatcgagcccgggcgatcgtctggggtcgccatacggtagaaccgccc 42311125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 41972314 - 41972458
Alignment:
Q  33 cctatttgcgtgtgagaattttcagattgc--ccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcga 130  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||| | ||||| |||||  ||||||||||||||||||||||    
T  41972314 cctatttgcgtgtgagaattttcagattttttccaaatttttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcga 41972413  T
Q  131 gc---ccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
     |   || ||||||||||||||||||| |||||||| ||||||||    
T  41972414 tcgagccaggcgaccgcccggggtcgctggacggtggaaccgccc 41972458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 33489815 - 33489670
Alignment:
Q  33 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcg- 129  Q
    ||||||||||||||||||||||||||||  || |||||||||||||| |||||||||||||| | ||||| | ||||||||||||| ||||||||||||     
T  33489815 cctatttgcgtgtgagaattttcagattttgctcaaatttttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcga 33489716  T
Q  130 ---agcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
       | ||||  |||||| |||||||||||||  |||||||||||||    
T  33489715 acaatcccgaacgaccgtccggggtcgccgggtggtgaaaccgccc 33489670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 23313345 - 23313220
Alignment:
Q  53 ttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaatt-----atcgagcccgggcgaccgcccg 147  Q
    |||||||||||||||||||||||||||||| |||||||||  ||||||  |||||||||||||||||| || |     ||||||||||||| ||||||||    
T  23313345 ttcagattgcccaaatttttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccg 23313246  T
Q  148 gggtcgccggacggtgaaaccgccca 173  Q
     | |||||  |||||  |||||||||    
T  23313245 agatcgccatacggtagaaccgccca 23313220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 44352621 - 44352667
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||    
T  44352621 atcgagcccgggcgacctcccggggtcgccggatggtgaaaccgccc 44352667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 31867005 - 31866960
Alignment:
Q  127 tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||    
T  31867005 tcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31866960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 5385 - 5230
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |     
T  5385 tcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttaga 5286  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgcc 155  Q
    ||| ||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  5285 ttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 31635 - 31463
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||| |||||||||| | ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  31635 tcaatagtgtgcaaaataaaattactagacctatttgcgagtgagaattttcagattgtccaaatttttctttttgtaagtgtgttaatgggcttttggg 31536  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    ||| ||||| |||||||||||||    ||||||||||||||||| | ||||||||||| || |||||||||||    
T  31535 ttgggtctagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccgggcgatgaaaccgccc 31463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 53080 - 52954
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  53080 tcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaattggcttttggg 52981  T
Q  104 ttgagtctaatgtgcaaaaattatcga 130  Q
    || | ||||||||||||||||||||||    
T  52980 ttaaatctaatgtgcaaaaattatcga 52954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 17997 - 17824
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| ||||||||||||||||| | |||||||||| | ||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  17997 tcaatagtgtgctaaataaaatttcaagacctatttacatgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 17898  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||||||||||    |||||||||| ||| ||| ||||||||||  |||||  |||||||||    
T  17897 ttgagtctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgccacacggtagaaccgccca 17824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 480469 - 480642
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||||||||   ||||| ||    
T  480469 tcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttgg 480568  T
Q  104 ttgagtctaatgtgcaaaaatt----atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||   |||||| |||||||||    
T  480569 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccca 480642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 677 - 504
Alignment:
Q  4 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 103  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||||||||   ||||| ||    
T  677 tcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttgg 578  T
Q  104 ttgagtctaatgtgcaaaaatta----tcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccca 173  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||| ||||   |||||| |||||||||    
T  577 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtggaaccgccca 504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 1306 - 1260
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 172  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||    
T  1306 atcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 1260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 194057 - 194021
Alignment:
Q  126 atcgagcccgggcgaccgcccggggtcgccggacggt 162  Q
    |||||||||||||||||||||||||||||||| ||||    
T  194057 atcgagcccgggcgaccgcccggggtcgccgggcggt 194021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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