View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_high_6 (Length: 405)
Name: NF16065_high_6
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_high_6 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: scaffold0223 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 21608 - 21270
Alignment:
| Q |
7 |
aagtccctttctctcgatattttcaacctttcacaatcatgattctgttttcttctcctattacttttcatactcttatatatgaagcaaagtagaatct |
106 |
Q |
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| T |
21608 |
aagtccctttctctcgatattttcaacctttcacaatcatgattctgttttcttcttctattacttttcatactcttatatatgaagcaaagtagaatct |
21509 |
T |
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| Q |
107 |
tatagaaagagtgttttgagg------------acccttttggatttgaaagaatgagtagttgtggaagggaaggtgttgtgagacaatatgtaagatc |
194 |
Q |
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| T |
21508 |
tatagaaagagtgttttgagggtttttttgaggacccttttggatttgaaagaatgagtagttgtggaagggaaggtgttgtgagacaatatgtaagatc |
21409 |
T |
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| Q |
195 |
aaaggttcctcgtttaagatggacacctgaacttcatcgttgctttgtttatgccattgaaactcttggtggtcatcaaagtatgtatatttctacatta |
294 |
Q |
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| T |
21408 |
aaaggttcctcgtttaagatggacacctgaacttcatcgttgctttgtttatgccattgaaactcttggtggtcatcaaagtatgtatatttctacatta |
21309 |
T |
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| Q |
295 |
ctttattagatgttattttcttgtttcatttatatatag |
333 |
Q |
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| T |
21308 |
ctttattagatgttattttcttgtttcatttatatatag |
21270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 25080630 - 25080515
Alignment:
| Q |
158 |
gtggaagggaaggtgttgtgagacaatatgtaagatcaaaggttcctcgtttaagatggacacctgaacttcatcgttgctttgtttatgccattgaaac |
257 |
Q |
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| T |
25080630 |
gtggaagggaaggtgtggcgagacaatatgtaagaccaaaggttccttgtttaagatggacacatgaacttcatcgttgctatatttgtgtc-ttgaaac |
25080532 |
T |
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| Q |
258 |
tcttggtggtcatcaaa |
274 |
Q |
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| T |
25080531 |
tcttgctggtcatcaaa |
25080515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 25138599 - 25138484
Alignment:
| Q |
158 |
gtggaagggaaggtgttgtgagacaatatgtaagatcaaaggttcctcgtttaagatggacacctgaacttcatcgttgctttgtttatgccattgaaac |
257 |
Q |
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| T |
25138599 |
gtggaagggaaggtgtggcgagacaatatgtaagaccaaaggttccttgtttaagatggacacatgaacttcatcgttgctatatttgtgtc-ttgaaac |
25138501 |
T |
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| Q |
258 |
tcttggtggtcatcaaa |
274 |
Q |
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| T |
25138500 |
tcttgctggtcatcaaa |
25138484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 50872837 - 50872735
Alignment:
| Q |
175 |
gtgagacaatatgtaagatcaaaggttcctcgtttaagatggacacctgaacttcatcgttgctttgtttatgccattgaaactcttggtggtcatcaaa |
274 |
Q |
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||||| || ||| |||||||||| || |||||||| |||||||| |||||||||||||||||||||||| |||| ||| |||| ||||| |||||||| | |
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| T |
50872837 |
gtgaggcagtatataagatcaaaagtccctcgtttgagatggactcctgaacttcatcgttgctttgttcatgctattcaaacccttggaggtcatcata |
50872738 |
T |
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| Q |
275 |
gta |
277 |
Q |
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||| |
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| T |
50872737 |
gta |
50872735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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