View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_high_7 (Length: 402)
Name: NF16065_high_7
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 7179014 - 7179381
Alignment:
| Q |
17 |
aaaatatactaattaagtgtttggagaacaaactaacctgagaaagccaatggaggcttgaagaagagtgcacaaaatgaagggacttagttgggaagag |
116 |
Q |
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| T |
7179014 |
aaaatatactaattaagtgtttggagaacaaactaacctgagaaagccaatggaggcttgaagaagagtgcacaaaatgaagggacttagttgggaagag |
7179113 |
T |
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| Q |
117 |
tctaccataaaaagtgcccggtacagcagaaacaaaacaattagaaccattgtgattatcatgattattgtatcccatgtcttgccttagttttttgtga |
216 |
Q |
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| T |
7179114 |
tctaccataaaaagtgcccggtacagcagaaacaaaacaattagaaccattgtgattatcatgattattgtatcccatgtcttgccttagttttttgtga |
7179213 |
T |
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| Q |
217 |
aaagatggcaaagaagcaaaaatgttgttgaagtcattggtgaaaaggtcattcatatacaacattagttcctttggtgctgtttgattcatcatgcttg |
316 |
Q |
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| T |
7179214 |
aaagatggcaaagaagcaaaaatgttgttgaagtcattggtgaaaaggtcattcatatacaacattagttcctttggtgctgtttgattcatcatgcttg |
7179313 |
T |
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| Q |
317 |
aggttgcatttatagcttcaactatttctgaaattacacttaaggcattaggtccggatgagcaacct |
384 |
Q |
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| T |
7179314 |
aggtttcatttatagcttcaactatttctgaaattacacttaaggcattaggtccggatgagcaacct |
7179381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 51 - 384
Target Start/End: Original strand, 7192217 - 7192550
Alignment:
| Q |
51 |
aacctgagaaagccaatggaggcttgaagaagagtgcacaaaatgaagggacttagttgggaagagtctaccataaaaagtgcccggtacagcagaaaca |
150 |
Q |
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| T |
7192217 |
aaccttagaaagccaatggaggcttgaagaagagtgcacaaaatgaagggacttagttgggaagagtctaccataaaaagtgcccggtacagcagaaaca |
7192316 |
T |
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| Q |
151 |
aaacaattagaaccattgtgattatcatgattattgtatcccatgtcttgccttagttttttgtgaaaagatggcaaagaagcaaaaatgttgttgaagt |
250 |
Q |
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| T |
7192317 |
aaacaattagaaccattgtgatcatgatgattattatttcccttttgttggcttaattttttgtggaaagatggcaaagaagcaaaaatgttgttgaagt |
7192416 |
T |
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| Q |
251 |
cattggtgaaaaggtcattcatatacaacattagttcctttggtgctgtttgattcatcatgcttgaggttgcatttatagcttcaactatttctgaaat |
350 |
Q |
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| T |
7192417 |
cattggtgaaaaggtcattcatatataacattagctcctttggtgctggtcgattcaacatgcttgaggttgcatttatagcttcaactatttctgaaat |
7192516 |
T |
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| Q |
351 |
tacacttaaggcattaggtccggatgagcaacct |
384 |
Q |
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| T |
7192517 |
tacccttagggcattaggtcctgatgaacaacct |
7192550 |
T |
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