View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_high_8 (Length: 399)
Name: NF16065_high_8
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 12908968 - 12908601
Alignment:
| Q |
1 |
ccctttgtgtttgtcctcctttctttcgttaattcatttggatgtgtttgcttctaatcccagaaaagtttattctgacaaagatatattctagctaggg |
100 |
Q |
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| T |
12908968 |
ccctttgtgtttgtcctcctttctttcgttaattcatttgcatgtgtttgcttctaattccagaaaagtttattctgacaaagatatattctagctaggg |
12908869 |
T |
|
| Q |
101 |
taatatatttacccatgaaatggaccaatagttagtttcttaaaattctctaaccaggaattctatgggtatatattatcctttttaagctattgagatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12908868 |
taatatatttacccatgaaatggaccaatagttagtttcttaaaattctctaaccaggaattctatgggtatatattatcctttttaagctattgagatc |
12908769 |
T |
|
| Q |
201 |
aaagaggttctatgtgataaagctgtaaggaaaaggacaagggactttgtcacgttgtaagtaatggaacttatgaaaagcaaattagattccaatttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12908768 |
aaagaggttctatgtgataaagctgtaaggaaaaggacaagggactttgtcacgttgtaagtaatggaacttatgaaaagcaaattagattccaatttgt |
12908669 |
T |
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| Q |
301 |
cgcaggccaccaaaaatatttgtttgagactaaaggaacctcattaagcaatatgtttatatatttat |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12908668 |
cgcaggccaccaaaaatatttgtttgagactaaaggaacctcattaagcaatatatttatatatttat |
12908601 |
T |
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