View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_low_1 (Length: 673)
Name: NF16065_low_1
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 630; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 3 - 660
Target Start/End: Complemental strand, 38440944 - 38440287
Alignment:
| Q |
3 |
ttattttctaccccactttcttatcatccataactgcgccccaaaatgaattatcaacaaagtgaatgttcagaaccatttggtgtgaaacatcaaacaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38440944 |
ttattttctaccccactttcttatcatccataactgcgccccaaaatgaattatcaacaaagtgaatgttcagaaccatttggtgtgaaacatcaaacaa |
38440845 |
T |
|
| Q |
103 |
tacaatgcaaaatgaaaagttaaaaccattccaaattccaaaaacagtacttcaacgttaaaaacaatatatgtggtcttctaagatgaaaacaatcttg |
202 |
Q |
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|| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38440844 |
taaaatgcaaaatgaaaagttaaaaccattccaaattccgaaaacagtacttcaatgttaaaaacaatatatgtggtcttctaagatgaaaacaatcttg |
38440745 |
T |
|
| Q |
203 |
aaaacaagtaaccatgacaaccttgcacagtatctagaagaggcatagtttgacatgcttcctcaacatcacgattcatccatttttctaatataatttc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38440744 |
aaaacaagtaaccatgacaaccttgcacagtatctagaagaggcatagtttgacatgcttcctcaacatcacgattcatccatttttctaatataacttc |
38440645 |
T |
|
| Q |
303 |
agcaataggagcaacttgatgctgcaacaatgctgcaccaaggggtcctatcaagttcaaccttgtagcagcagataccacatctctcattgttatgaac |
402 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38440644 |
agcaataggagcaacttgatgttgcaacaatgctgcaccaaggggtcctatcaagttcaaccttgtagcagcagataccacatctctcattgttatgaac |
38440545 |
T |
|
| Q |
403 |
atgaaagctctctgagaacttgtactatcgaaccctaacgcaccacatgttagtccaaatataggagcgtgatgaaaagatacagtccctaacttcagag |
502 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38440544 |
atgaaagctctctgagaacttgtactatcgaaccccaacgcaccacatgttagtccaaatataggagcgtgatgaaaagatacagtccctaacttcatag |
38440445 |
T |
|
| Q |
503 |
aagaatctctcattgttttgagagaaggaatctccgcaaacacagctgaagctaccctcattaatgcagatccttgtgagattgatgcctttcgacccac |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38440444 |
aagaatctctcattgttttgagagaaggaatctccgcaaacacagctgaagctaccctcattaatgcagatccttgtgagattgatgcctttcgacccac |
38440345 |
T |
|
| Q |
603 |
ttcattagtaagggtagcatccaatatcctgtcaagtttatgccaggtttccatattc |
660 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38440344 |
ttcattagtaagggtagcatccaatatcctgtcaagtttatgccaggtttccatattc |
38440287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 147 - 380
Target Start/End: Complemental strand, 38449187 - 38448956
Alignment:
| Q |
147 |
cagtacttcaacgttaaaaacaatatatgtggtcttctaagatgaaaacaatcttgaaaacaagtaaccatgacaaccttgcacagtatctagaagaggc |
246 |
Q |
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||||| |||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||| |
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| T |
38449187 |
cagtaattcaacgttaaaaacattaaatgtggtcttctaagatgaaaacagtcttgaaaacaagtaaccatggcaac-ttgcacagtgtctagaagaggc |
38449089 |
T |
|
| Q |
247 |
atagtttgacatgcttcctcaacatcacgattcatccatttttctaatataatttcagcaataggagcaacttgatgctgcaacaatgctgcaccaaggg |
346 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
38449088 |
atagtttgacatgcttcctcaacatctcgattcatccatttttctaatataacttcagcaataggagcaacttgatattgcaacaatgctgcaccaa-ag |
38448990 |
T |
|
| Q |
347 |
gtcctatcaagttcaaccttgtagcagcagatac |
380 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||| |
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| T |
38448989 |
gtcctatcaagttcaaccttttagtagcagatac |
38448956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 480 - 529
Target Start/End: Complemental strand, 38448961 - 38448912
Alignment:
| Q |
480 |
agatacagtccctaacttcagagaagaatctctcattgttttgagagaag |
529 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38448961 |
agatactgtccctaacttcagagaagaatctctcattgttttgagagaag |
38448912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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