View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16065_low_10 (Length: 380)
Name: NF16065_low_10
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 35034780 - 35035125
Alignment:
| Q |
17 |
aatgtaaccaagaactatataacccaaatatttcatagacaaatacctaaaattttcacttgtggtactcaatggttcatgtgatttaatgtttggattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35034780 |
aatgtaaccaagaactatataacccaaatatttcatagacaaatacctcaaattttcacttgtggtactcaatggttcatgtgatttaatgtttggattt |
35034879 |
T |
|
| Q |
117 |
gataaggaagttatgtgagggttagaatttgtgaccatttcaacttcaatctgaatttgatcaacaatgatggggtttgcaaaagcaaaacgtgcatgag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35034880 |
gataaggaagttatgtgagggttagaatttgtgaccatttcaacttcaatctgaatttgatcaacaatgatggggtttgcaaaagcaaaacgtgcatgag |
35034979 |
T |
|
| Q |
217 |
aagaatcgattttacctagatcagttttgagctttaatctaatgaaataaagccctaacatggaggtaaagatttcaccacctatgaacattaatatggt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35034980 |
aagaatcgattttacctagatcagttttgagctttaatctaatgaaataaagccctaacatggaggtaaagatttcaccacctatgaacattaagatggt |
35035079 |
T |
|
| Q |
317 |
aatgatgattaattgagggttagaaaaaatttgcatttcaaccgtg |
362 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
35035080 |
aatgatgattaattgagggttagaaaaaaattccatttcaaccgtg |
35035125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 143 - 362
Target Start/End: Original strand, 34974182 - 34974401
Alignment:
| Q |
143 |
atttgtgaccatttcaacttcaatctgaatttgatcaacaatgatggggtttgcaaaagcaaaacgtgcatgagaagaatcgattttacctagatcagtt |
242 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| | ||| | |||| | |||||| |||||||||||||||| | |||||| |||| |||||| |
|
|
| T |
34974182 |
atttgtgaccatttcaacttcaagatgaatttgttcaatattgaaagtgtttatagaagcaagacgtgcatgagaagaagcaattttatctagctcagtt |
34974281 |
T |
|
| Q |
243 |
ttgagctttaatctaatgaaataaagccctaacatggaggtaaagatttcaccacctatgaacattaatatggtaatgatgattaattgagggttagaaa |
342 |
Q |
| |
|
|||||| || | ||||||||| |||| |||| ||| || ||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34974282 |
ttgagccttgacctaatgaaaaaaagtcctaccattgatgtaaaaacttcaccacctatgaacattaagatggtaatgatgattaattgagggttagaaa |
34974381 |
T |
|
| Q |
343 |
aaatttgcatttcaaccgtg |
362 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
34974382 |
aattttgcatttcaaccgtg |
34974401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 144 - 363
Target Start/End: Original strand, 34955718 - 34955940
Alignment:
| Q |
144 |
tttgtgaccatttcaacttcaatctgaatttgatcaacaatgatg---gggtttgcaaaagcaaaacgtgcatgagaagaatcgattttacctagatcag |
240 |
Q |
| |
|
||||||||||||||| |||||| |||| | |||||||||| ||| |||||| | |||||| ||||||||| ||||| |||||||| ||| |||| |
|
|
| T |
34955718 |
tttgtgaccatttcatcttcaaggtgaaatcgatcaacaataatgaaagggtttcgagaagcaagacgtgcatgtgaagacgcgattttatctaaatcaa |
34955817 |
T |
|
| Q |
241 |
ttttgagctttaatctaatgaaataaagccctaacatggaggtaaagatttcaccacctatgaacattaatatggtaatgatgattaattgagggttaga |
340 |
Q |
| |
|
|||||||| || | ||||||||| |||| |||| || || ||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
34955818 |
ttttgagccttgacctaatgaaaaaaagtcctaccaatgatgtaaagacttcaccacctatgaacattaagatggtaatgatgattaattgagtgttaga |
34955917 |
T |
|
| Q |
341 |
aaaaatttgcatttcaaccgtga |
363 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
34955918 |
aaaaattcccatttcaaccgtga |
34955940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 34955623 - 34955705
Alignment:
| Q |
16 |
aaatgtaaccaagaactatataacccaaatatttcatagacaaatacctaaaattttcacttgtggtactcaatggttcatgt |
98 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||||||||| ||||| ||||||||| |||| |||||||| | ||||||| |
|
|
| T |
34955623 |
aaatgtaaccaataactacataacctaaatatttcatagacaagtacctcaaattttcatttgttgtactcaaagattcatgt |
34955705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 34974038 - 34974115
Alignment:
| Q |
20 |
gtaaccaagaactatataacccaaatatttcatagacaaatacctaaaattttcacttgtggtactcaatggttcatg |
97 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||| |||||||| | |||||| |
|
|
| T |
34974038 |
gtaagcaaaaactacataacccaaatatttcatagacaaatacctcaaattttcatttgttgtactcaaagattcatg |
34974115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University