View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16065_low_12 (Length: 371)
Name: NF16065_low_12
Description: NF16065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16065_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 35694993 - 35695338
Alignment:
| Q |
17 |
gaatcactgcacaaagtatttgatatatgaggaagtaaagatgttacacatgcgaaacaatcttctttggtgaagtcgtttctgcattgaaaaaagccgg |
116 |
Q |
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| T |
35694993 |
gaatcactgcacaaagtatttgatatatgaggaagtaaagatgttacacatgcgaaacaatcttctttggtgaagtcgtttctgcattgaaaaaagccgg |
35695092 |
T |
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| Q |
117 |
agatgaaggtgtcgtcgttgattgcttcgttggttttgaagaacttgtactgggaagattgtgttatgaattgttggaataaggaattgagtgattgaga |
216 |
Q |
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| T |
35695093 |
agatgaaggtgtcgtcgttgattgcttcgttggttttgaagaacttgtattgggaagattgtgttatgaattgttggaataaggaattgagtgattgaga |
35695192 |
T |
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| Q |
217 |
ataagattgatggttgaaggtttgagttgagcatgttttgtatactaatttgttgtaattggaaattggttcagaagaaggtaggaagagcaagaaagtg |
316 |
Q |
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| T |
35695193 |
ataagattgatggttgaaggtttgagttgagcatgttttgtatactaatttgttgtaattggaaattggttcagaagaaggtaggaagagcaagaaagtg |
35695292 |
T |
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| Q |
317 |
taactaatgaagaagatggtggtggaatattgggaaacattcattt |
362 |
Q |
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| T |
35695293 |
taactaatgaagaagatggtggtggaatattgggaaacattcattt |
35695338 |
T |
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